2020-10-28T00:12:51,069 Created temporary directory: /tmp/pip-ephem-wheel-cache-40uv1aer
2020-10-28T00:12:51,072 Created temporary directory: /tmp/pip-req-tracker-oqhw2yeq
2020-10-28T00:12:51,072 Initialized build tracking at /tmp/pip-req-tracker-oqhw2yeq
2020-10-28T00:12:51,072 Created build tracker: /tmp/pip-req-tracker-oqhw2yeq
2020-10-28T00:12:51,073 Entered build tracker: /tmp/pip-req-tracker-oqhw2yeq
2020-10-28T00:12:51,073 Created temporary directory: /tmp/pip-wheel-6pi66jkk
2020-10-28T00:12:51,083 1 location(s) to search for versions of jcvi:
2020-10-28T00:12:51,083 * https://pypi.org/simple/jcvi/
2020-10-28T00:12:51,084 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/
2020-10-28T00:12:51,084 Getting page https://pypi.org/simple/jcvi/
2020-10-28T00:12:51,086 Found index url https://pypi.org/simple
2020-10-28T00:12:51,192   Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7
2020-10-28T00:12:51,192   Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8
2020-10-28T00:12:51,193   Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9
2020-10-28T00:12:51,193   Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10
2020-10-28T00:12:51,193   Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12
2020-10-28T00:12:51,194   Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1
2020-10-28T00:12:51,194   Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2
2020-10-28T00:12:51,194   Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3
2020-10-28T00:12:51,195   Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5
2020-10-28T00:12:51,195   Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6
2020-10-28T00:12:51,195   Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7
2020-10-28T00:12:51,196   Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8
2020-10-28T00:12:51,196   Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9
2020-10-28T00:12:51,196   Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1
2020-10-28T00:12:51,197   Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2
2020-10-28T00:12:51,197   Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6
2020-10-28T00:12:51,197   Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9
2020-10-28T00:12:51,198   Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1
2020-10-28T00:12:51,198   Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3
2020-10-28T00:12:51,198   Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4
2020-10-28T00:12:51,199   Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5
2020-10-28T00:12:51,199   Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6
2020-10-28T00:12:51,199   Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7
2020-10-28T00:12:51,199   Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4
2020-10-28T00:12:51,200   Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12
2020-10-28T00:12:51,200   Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6
2020-10-28T00:12:51,200   Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9
2020-10-28T00:12:51,201   Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10
2020-10-28T00:12:51,201   Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11
2020-10-28T00:12:51,201   Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12
2020-10-28T00:12:51,202   Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13
2020-10-28T00:12:51,202   Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14
2020-10-28T00:12:51,202   Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1
2020-10-28T00:12:51,203   Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2
2020-10-28T00:12:51,203   Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3
2020-10-28T00:12:51,203   Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4
2020-10-28T00:12:51,203   Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5
2020-10-28T00:12:51,204   Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6
2020-10-28T00:12:51,204   Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7
2020-10-28T00:12:51,204   Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8
2020-10-28T00:12:51,205   Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9
2020-10-28T00:12:51,205   Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10
2020-10-28T00:12:51,215 Given no hashes to check 1 links for project 'jcvi': discarding no candidates
2020-10-28T00:12:51,216 Using version 1.0.10 (newest of versions: 1.0.10)
2020-10-28T00:12:51,220 Collecting jcvi==1.0.10
2020-10-28T00:12:51,222   Created temporary directory: /tmp/pip-unpack-s92lhv99
2020-10-28T00:12:51,264   Downloading jcvi-1.0.10.tar.gz (840 kB)
2020-10-28T00:12:52,092   Added jcvi==1.0.10 from https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 to build tracker '/tmp/pip-req-tracker-oqhw2yeq'
2020-10-28T00:12:52,093     Running setup.py (path:/tmp/pip-wheel-6pi66jkk/jcvi/setup.py) egg_info for package jcvi
2020-10-28T00:12:52,094     Created temporary directory: /tmp/pip-pip-egg-info-rx97mdhn
2020-10-28T00:12:52,094     Running command python setup.py egg_info
2020-10-28T00:12:53,666     running egg_info
2020-10-28T00:12:53,667     creating /tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info
2020-10-28T00:12:53,668     writing /tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info/PKG-INFO
2020-10-28T00:12:53,672     writing dependency_links to /tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info/dependency_links.txt
2020-10-28T00:12:53,674     writing requirements to /tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info/requires.txt
2020-10-28T00:12:53,675     writing top-level names to /tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info/top_level.txt
2020-10-28T00:12:53,677     writing manifest file '/tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info/SOURCES.txt'
2020-10-28T00:12:53,703     reading manifest file '/tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info/SOURCES.txt'
2020-10-28T00:12:53,705     reading manifest template 'MANIFEST.in'
2020-10-28T00:12:53,718     writing manifest file '/tmp/pip-pip-egg-info-rx97mdhn/jcvi.egg-info/SOURCES.txt'
2020-10-28T00:12:53,720     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.10' to '1.0.10'
2020-10-28T00:12:53,720       warnings.warn(tmpl.format(**locals()))
2020-10-28T00:12:53,810   Source in /tmp/pip-wheel-6pi66jkk/jcvi has version 1.0.10, which satisfies requirement jcvi==1.0.10 from https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562
2020-10-28T00:12:53,811   Removed jcvi==1.0.10 from https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 from build tracker '/tmp/pip-req-tracker-oqhw2yeq'
2020-10-28T00:12:53,814 Building wheels for collected packages: jcvi
2020-10-28T00:12:53,819   Created temporary directory: /tmp/pip-wheel-w_g_ma4u
2020-10-28T00:12:53,819   Building wheel for jcvi (setup.py): started
2020-10-28T00:12:53,819   Destination directory: /tmp/pip-wheel-w_g_ma4u
2020-10-28T00:12:53,820   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6pi66jkk/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6pi66jkk/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-w_g_ma4u
2020-10-28T00:12:55,237   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.10' to '1.0.10'
2020-10-28T00:12:55,238     warnings.warn(tmpl.format(**locals()))
2020-10-28T00:12:55,293   running bdist_wheel
2020-10-28T00:12:55,298   running build
2020-10-28T00:12:55,298   running build_py
2020-10-28T00:12:55,303   creating build
2020-10-28T00:12:55,303   creating build/lib.linux-armv7l-3.7
2020-10-28T00:12:55,304   creating build/lib.linux-armv7l-3.7/jcvi
2020-10-28T00:12:55,305   copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi
2020-10-28T00:12:55,307   copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi
2020-10-28T00:12:55,311   creating build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,312   copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,315   copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,317   copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,321   copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,323   copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,326   copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,330   copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,332   copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,334   copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,336   copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,339   copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,341   copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,344   copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,346   copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,349   copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,351   copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,357   copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,359   copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,364   copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,366   copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,370   copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,372   copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,374   copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,376   copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,378   copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,382   copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,384   copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,387   copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,389   copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,392   copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,399   creating build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,400   copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,402   copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,405   copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,407   copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,409   copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,412   copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,417   copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,420   copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,423   copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,425   copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,428   copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,432   copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,435   copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,437   copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,441   copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-10-28T00:12:55,445   creating build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,446   copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,450   copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,454   copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,457   copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,459   copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,462   copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,465   copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,469   copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,471   copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,474   copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,476   copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,478   copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,482   copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,485   copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,487   copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,491   copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,493   copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-10-28T00:12:55,498   creating build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,499   copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,502   copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,506   copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,509   copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,512   copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,514   copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,517   copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,520   copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,523   copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,526   copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,529   copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,536   copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,538   copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,541   copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,544   copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,547   copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,549   copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,551   copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,555   copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,558   copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,561   copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,564   copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,568   copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-10-28T00:12:55,571   creating build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,572   copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,575   copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,577   copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,580   copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,584   copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,586   copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,589   copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,592   copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,595   copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,597   copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,600   copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,603   copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-10-28T00:12:55,607   creating build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,608   copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,610   copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,615   copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,618   copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,621   copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,624   copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,626   copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,630   copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,633   copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,635   copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-10-28T00:12:55,638   creating build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,639   copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,642   copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,644   copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,646   copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,649   copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,651   copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,654   copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,657   copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,661   copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,663   copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,666   copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,670   copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-10-28T00:12:55,675   creating build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,676   copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,680   copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,685   copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,688   copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,691   copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,696   copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,699   copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,703   copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,706   copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,709   copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,714   copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,719   copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,724   copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,728   copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,732   copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,735   copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,739   copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,742   copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,744   copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,747   copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,750   copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,754   copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,758   copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,761   copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,764   copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,767   copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,769   copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,773   creating build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,774   copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,776   copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,780   copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,783   copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,787   copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,789   copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,792   copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,794   copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,798   copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,800   copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,803   copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-10-28T00:12:55,810   creating build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,811   copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,815   copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,820   copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,824   copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,827   copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,830   copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,832   copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,835   copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,837   copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,841   copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,845   copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,847   copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,849   copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,852   copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,854   copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,856   copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,860   copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,863   copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,865   copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,868   copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,871   copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,875   copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,878   copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,881   copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,884   copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,887   copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,890   copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,892   copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-10-28T00:12:55,896   creating build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,897   copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,899   running egg_info
2020-10-28T00:12:55,911   writing jcvi.egg-info/PKG-INFO
2020-10-28T00:12:55,914   writing dependency_links to jcvi.egg-info/dependency_links.txt
2020-10-28T00:12:55,916   writing requirements to jcvi.egg-info/requires.txt
2020-10-28T00:12:55,917   writing top-level names to jcvi.egg-info/top_level.txt
2020-10-28T00:12:55,936   reading manifest file 'jcvi.egg-info/SOURCES.txt'
2020-10-28T00:12:55,942   reading manifest template 'MANIFEST.in'
2020-10-28T00:12:55,956   writing manifest file 'jcvi.egg-info/SOURCES.txt'
2020-10-28T00:12:55,962   copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:12:55,965   copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:55,968   copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,971   copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,976   copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,979   copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,982   copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,986   copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,988   copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,990   copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,993   copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:55,999   copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:56,002   copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:56,006   copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:56,010   copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-10-28T00:12:56,032   UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py
2020-10-28T00:12:56,034   set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.10'
2020-10-28T00:12:56,034   running build_ext
2020-10-28T00:12:56,120   cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c
2020-10-28T00:12:56,717   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-6pi66jkk/jcvi/jcvi/assembly/chic.pyx
2020-10-28T00:12:56,718     tree = Parsing.p_module(s, pxd, full_module_name)
2020-10-28T00:12:58,200   cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c
2020-10-28T00:12:58,811   building 'jcvi.assembly.chic' extension
2020-10-28T00:12:58,811   creating build/temp.linux-armv7l-3.7
2020-10-28T00:12:58,812   creating build/temp.linux-armv7l-3.7/jcvi
2020-10-28T00:12:58,813   creating build/temp.linux-armv7l-3.7/jcvi/assembly
2020-10-28T00:12:58,814   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3
2020-10-28T00:12:59,182   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-10-28T00:12:59,182                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-10-28T00:12:59,182                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-10-28T00:12:59,182                    from jcvi/assembly/chic.c:610:
2020-10-28T00:12:59,183   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-10-28T00:12:59,183    #warning "Using deprecated NumPy API, disable it with " \
2020-10-28T00:12:59,183     ^~~~~~~
2020-10-28T00:13:02,809   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so
2020-10-28T00:13:02,954   building 'jcvi.formats.cblast' extension
2020-10-28T00:13:02,955   creating build/temp.linux-armv7l-3.7/jcvi/formats
2020-10-28T00:13:02,955   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3
2020-10-28T00:13:09,961   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so
2020-10-28T00:13:10,115   installing to build/bdist.linux-armv7l/wheel
2020-10-28T00:13:10,115   running install
2020-10-28T00:13:10,116   running install_lib
2020-10-28T00:13:10,121   creating build/bdist.linux-armv7l
2020-10-28T00:13:10,121   creating build/bdist.linux-armv7l/wheel
2020-10-28T00:13:10,123   creating build/bdist.linux-armv7l/wheel/jcvi
2020-10-28T00:13:10,124   copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-10-28T00:13:10,127   creating build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,128   copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,132   copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,135   copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,140   copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,143   copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,146   copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,150   copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,153   copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,155   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,172   copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,175   copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,178   copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,181   copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,184   copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,187   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,190   copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,192   copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,195   copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,202   copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,204   copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,209   copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,212   copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,215   copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,218   copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,221   copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,223   copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,226   copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,229   copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,232   copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,235   copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,238   copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,240   copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-10-28T00:13:10,246   creating build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,247   copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,250   copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,253   copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,256   copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,259   copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,262   copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,266   copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,269   copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,273   copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,276   copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,280   copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,284   copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,288   copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,291   copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,295   copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-10-28T00:13:10,300   creating build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,301   copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,305   copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,309   copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,312   copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,315   copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,318   copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,323   creating build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,325   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,329   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,332   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,336   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,340   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,346   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,352   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,356   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,358   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,363   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,366   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,369   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,372   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,376   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-10-28T00:13:10,379   copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,382   copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,385   copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,389   copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,392   copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,395   copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,399   copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,403   copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,406   copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,410   copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,413   copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-10-28T00:13:10,418   creating build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,419   copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,424   copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,428   copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,431   copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,434   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,437   copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,441   copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,444   copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,448   copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,451   copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,455   copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,458   copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,462   copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,465   copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,469   copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,472   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,475   copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,478   copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,482   copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,486   copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,490   copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,493   copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,497   copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-10-28T00:13:10,501   copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-10-28T00:13:10,505   creating build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,507   copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,510   copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,514   copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,517   copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,522   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,525   copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,528   copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,532   copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,535   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,538   copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,541   copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,545   copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-10-28T00:13:10,550   creating build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,551   copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,554   copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,559   copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,563   copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,566   copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,570   copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,573   copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,577   copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,581   copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,585   copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-10-28T00:13:10,589   creating build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,590   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,594   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,598   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,601   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,604   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,607   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,611   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,614   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,618   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,620   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,624   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,628   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-10-28T00:13:10,632   creating build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,634   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,638   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,642   copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,645   copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,649   copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,653   copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,656   copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,661   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,663   copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,667   copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,672   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,678   copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,683   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,686   copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,690   copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,694   copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,697   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,701   copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,705   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,707   copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,711   copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,714   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,725   copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,729   copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,734   copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,738   copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,742   copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,745   copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,749   copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-10-28T00:13:10,753   creating build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,755   copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,758   copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,761   copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,765   copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,770   copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,772   copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,776   copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,779   copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,782   copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,786   copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,789   copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-10-28T00:13:10,795   creating build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,796   copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,800   copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,805   copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,808   copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,811   copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,814   copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,816   copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,819   copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,822   copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,826   copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,829   copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,831   copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,834   copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,836   copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,838   copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,841   copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,844   copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,848   copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,851   copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,854   copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,857   copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,862   copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,865   copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,868   copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,872   copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,875   copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,878   copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,880   copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-10-28T00:13:10,883   running install_egg_info
2020-10-28T00:13:10,894   Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.10-py3.7.egg-info
2020-10-28T00:13:10,912   running install_scripts
2020-10-28T00:13:10,986   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2020-10-28T00:13:10,993   creating build/bdist.linux-armv7l/wheel/jcvi-1.0.10.dist-info/WHEEL
2020-10-28T00:13:10,997   creating '/tmp/pip-wheel-w_g_ma4u/jcvi-1.0.10-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-10-28T00:13:11,000   adding 'jcvi/__init__.py'
2020-10-28T00:13:11,002   adding 'jcvi/_version.py'
2020-10-28T00:13:11,004   adding 'jcvi/algorithms/__init__.py'
2020-10-28T00:13:11,005   adding 'jcvi/algorithms/__main__.py'
2020-10-28T00:13:11,007   adding 'jcvi/algorithms/ec.py'
2020-10-28T00:13:11,010   adding 'jcvi/algorithms/formula.py'
2020-10-28T00:13:11,013   adding 'jcvi/algorithms/graph.py'
2020-10-28T00:13:11,015   adding 'jcvi/algorithms/lis.py'
2020-10-28T00:13:11,019   adding 'jcvi/algorithms/lpsolve.py'
2020-10-28T00:13:11,021   adding 'jcvi/algorithms/matrix.py'
2020-10-28T00:13:11,023   adding 'jcvi/algorithms/maxsum.py'
2020-10-28T00:13:11,024   adding 'jcvi/algorithms/ml.py'
2020-10-28T00:13:11,026   adding 'jcvi/algorithms/supermap.py'
2020-10-28T00:13:11,029   adding 'jcvi/algorithms/tsp.py'
2020-10-28T00:13:11,031   adding 'jcvi/annotation/__init__.py'
2020-10-28T00:13:11,032   adding 'jcvi/annotation/__main__.py'
2020-10-28T00:13:11,035   adding 'jcvi/annotation/ahrd.py'
2020-10-28T00:13:11,037   adding 'jcvi/annotation/automaton.py'
2020-10-28T00:13:11,039   adding 'jcvi/annotation/depth.py'
2020-10-28T00:13:11,041   adding 'jcvi/annotation/evm.py'
2020-10-28T00:13:11,043   adding 'jcvi/annotation/maker.py'
2020-10-28T00:13:11,046   adding 'jcvi/annotation/pasa.py'
2020-10-28T00:13:11,048   adding 'jcvi/annotation/qc.py'
2020-10-28T00:13:11,053   adding 'jcvi/annotation/reformat.py'
2020-10-28T00:13:11,056   adding 'jcvi/annotation/stats.py'
2020-10-28T00:13:11,058   adding 'jcvi/annotation/train.py'
2020-10-28T00:13:11,060   adding 'jcvi/apps/__init__.py'
2020-10-28T00:13:11,061   adding 'jcvi/apps/__main__.py'
2020-10-28T00:13:11,063   adding 'jcvi/apps/align.py'
2020-10-28T00:13:11,072   adding 'jcvi/apps/base.py'
2020-10-28T00:13:11,075   adding 'jcvi/apps/biomart.py'
2020-10-28T00:13:11,076   adding 'jcvi/apps/blastplus.py'
2020-10-28T00:13:11,077   adding 'jcvi/apps/bowtie.py'
2020-10-28T00:13:11,079   adding 'jcvi/apps/bwa.py'
2020-10-28T00:13:11,081   adding 'jcvi/apps/cap3.py'
2020-10-28T00:13:11,082   adding 'jcvi/apps/cdhit.py'
2020-10-28T00:13:11,084   adding 'jcvi/apps/console.py'
2020-10-28T00:13:11,085   adding 'jcvi/apps/emboss.py'
2020-10-28T00:13:11,088   adding 'jcvi/apps/fetch.py'
2020-10-28T00:13:11,091   adding 'jcvi/apps/gbsubmit.py'
2020-10-28T00:13:11,092   adding 'jcvi/apps/gmap.py'
2020-10-28T00:13:11,095   adding 'jcvi/apps/grid.py'
2020-10-28T00:13:11,100   adding 'jcvi/apps/ks.py'
2020-10-28T00:13:11,102   adding 'jcvi/apps/lastz.py'
2020-10-28T00:13:11,103   adding 'jcvi/apps/mask.py'
2020-10-28T00:13:11,108   adding 'jcvi/apps/phylo.py'
2020-10-28T00:13:11,109   adding 'jcvi/apps/r.py'
2020-10-28T00:13:11,111   adding 'jcvi/apps/restriction.py'
2020-10-28T00:13:11,112   adding 'jcvi/apps/script.py'
2020-10-28T00:13:11,114   adding 'jcvi/apps/softlink.py'
2020-10-28T00:13:11,115   adding 'jcvi/apps/tesseract.py'
2020-10-28T00:13:11,120   adding 'jcvi/apps/uclust.py'
2020-10-28T00:13:11,121   adding 'jcvi/apps/uniprot.py'
2020-10-28T00:13:11,123   adding 'jcvi/apps/vecscreen.py'
2020-10-28T00:13:11,126   adding 'jcvi/assembly/__init__.py'
2020-10-28T00:13:11,127   adding 'jcvi/assembly/__main__.py'
2020-10-28T00:13:11,135   adding 'jcvi/assembly/allmaps.py'
2020-10-28T00:13:11,139   adding 'jcvi/assembly/allpaths.py'
2020-10-28T00:13:11,140   adding 'jcvi/assembly/amos.py'
2020-10-28T00:13:11,142   adding 'jcvi/assembly/automaton.py'
2020-10-28T00:13:11,144   adding 'jcvi/assembly/bambus.py'
2020-10-28T00:13:11,145   adding 'jcvi/assembly/base.py'
2020-10-28T00:13:11,150   adding 'jcvi/assembly/ca.py'
2020-10-28T00:13:11,197   adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so'
2020-10-28T00:13:11,199   adding 'jcvi/assembly/chic.pyx'
2020-10-28T00:13:11,201   adding 'jcvi/assembly/coverage.py'
2020-10-28T00:13:11,203   adding 'jcvi/assembly/gaps.py'
2020-10-28T00:13:11,206   adding 'jcvi/assembly/geneticmap.py'
2020-10-28T00:13:11,211   adding 'jcvi/assembly/goldenpath.py'
2020-10-28T00:13:11,219   adding 'jcvi/assembly/hic.py'
2020-10-28T00:13:11,224   adding 'jcvi/assembly/kmer.py'
2020-10-28T00:13:11,225   adding 'jcvi/assembly/meraculous.py'
2020-10-28T00:13:11,228   adding 'jcvi/assembly/opticalmap.py'
2020-10-28T00:13:11,232   adding 'jcvi/assembly/patch.py'
2020-10-28T00:13:11,234   adding 'jcvi/assembly/pbjelly.py'
2020-10-28T00:13:11,237   adding 'jcvi/assembly/postprocess.py'
2020-10-28T00:13:11,240   adding 'jcvi/assembly/preprocess.py'
2020-10-28T00:13:11,242   adding 'jcvi/assembly/sim.py'
2020-10-28T00:13:11,244   adding 'jcvi/assembly/soap.py'
2020-10-28T00:13:11,246   adding 'jcvi/assembly/sspace.py'
2020-10-28T00:13:11,248   adding 'jcvi/assembly/syntenypath.py'
2020-10-28T00:13:11,250   adding 'jcvi/assembly/trinity.py'
2020-10-28T00:13:11,252   adding 'jcvi/assembly/unitig.py'
2020-10-28T00:13:11,254   adding 'jcvi/compara/__init__.py'
2020-10-28T00:13:11,255   adding 'jcvi/compara/__main__.py'
2020-10-28T00:13:11,257   adding 'jcvi/compara/blastfilter.py'
2020-10-28T00:13:11,261   adding 'jcvi/compara/catalog.py'
2020-10-28T00:13:11,264   adding 'jcvi/compara/fractionation.py'
2020-10-28T00:13:11,266   adding 'jcvi/compara/pad.py'
2020-10-28T00:13:11,268   adding 'jcvi/compara/phylogeny.py'
2020-10-28T00:13:11,270   adding 'jcvi/compara/quota.py'
2020-10-28T00:13:11,272   adding 'jcvi/compara/reconstruct.py'
2020-10-28T00:13:11,274   adding 'jcvi/compara/synfind.py'
2020-10-28T00:13:11,282   adding 'jcvi/compara/synteny.py'
2020-10-28T00:13:11,285   adding 'jcvi/formats/__init__.py'
2020-10-28T00:13:11,286   adding 'jcvi/formats/__main__.py'
2020-10-28T00:13:11,288   adding 'jcvi/formats/ace.py'
2020-10-28T00:13:11,295   adding 'jcvi/formats/agp.py'
2020-10-28T00:13:11,300   adding 'jcvi/formats/base.py'
2020-10-28T00:13:11,309   adding 'jcvi/formats/bed.py'
2020-10-28T00:13:11,315   adding 'jcvi/formats/blast.py'
2020-10-28T00:13:11,317   adding 'jcvi/formats/btab.py'
2020-10-28T00:13:11,419   adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so'
2020-10-28T00:13:11,424   adding 'jcvi/formats/cblast.pyx'
2020-10-28T00:13:11,426   adding 'jcvi/formats/cdt.py'
2020-10-28T00:13:11,428   adding 'jcvi/formats/chain.py'
2020-10-28T00:13:11,429   adding 'jcvi/formats/contig.py'
2020-10-28T00:13:11,431   adding 'jcvi/formats/coords.py'
2020-10-28T00:13:11,433   adding 'jcvi/formats/excel.py'
2020-10-28T00:13:11,443   adding 'jcvi/formats/fasta.py'
2020-10-28T00:13:11,447   adding 'jcvi/formats/fastq.py'
2020-10-28T00:13:11,449   adding 'jcvi/formats/fpc.py'
2020-10-28T00:13:11,451   adding 'jcvi/formats/genbank.py'
2020-10-28T00:13:11,465   adding 'jcvi/formats/gff.py'
2020-10-28T00:13:11,467   adding 'jcvi/formats/html.py'
2020-10-28T00:13:11,469   adding 'jcvi/formats/maf.py'
2020-10-28T00:13:11,470   adding 'jcvi/formats/obo.py'
2020-10-28T00:13:11,472   adding 'jcvi/formats/paf.py'
2020-10-28T00:13:11,473   adding 'jcvi/formats/pdf.py'
2020-10-28T00:13:11,475   adding 'jcvi/formats/posmap.py'
2020-10-28T00:13:11,477   adding 'jcvi/formats/psl.py'
2020-10-28T00:13:11,479   adding 'jcvi/formats/pyblast.py'
2020-10-28T00:13:11,482   adding 'jcvi/formats/sam.py'
2020-10-28T00:13:11,484   adding 'jcvi/formats/sbt.py'
2020-10-28T00:13:11,486   adding 'jcvi/formats/sizes.py'
2020-10-28T00:13:11,489   adding 'jcvi/formats/vcf.py'
2020-10-28T00:13:11,492   adding 'jcvi/graphics/__init__.py'
2020-10-28T00:13:11,493   adding 'jcvi/graphics/__main__.py'
2020-10-28T00:13:11,496   adding 'jcvi/graphics/align.py'
2020-10-28T00:13:11,498   adding 'jcvi/graphics/assembly.py'
2020-10-28T00:13:11,501   adding 'jcvi/graphics/base.py'
2020-10-28T00:13:11,503   adding 'jcvi/graphics/blastplot.py'
2020-10-28T00:13:11,506   adding 'jcvi/graphics/chromosome.py'
2020-10-28T00:13:11,508   adding 'jcvi/graphics/coverage.py'
2020-10-28T00:13:11,510   adding 'jcvi/graphics/dotplot.py'
2020-10-28T00:13:11,513   adding 'jcvi/graphics/glyph.py'
2020-10-28T00:13:11,516   adding 'jcvi/graphics/grabseeds.py'
2020-10-28T00:13:11,518   adding 'jcvi/graphics/graph.py'
2020-10-28T00:13:11,519   adding 'jcvi/graphics/heatmap.py'
2020-10-28T00:13:11,521   adding 'jcvi/graphics/histogram.py'
2020-10-28T00:13:11,523   adding 'jcvi/graphics/karyotype.py'
2020-10-28T00:13:11,528   adding 'jcvi/graphics/landscape.py'
2020-10-28T00:13:11,529   adding 'jcvi/graphics/logo.py'
2020-10-28T00:13:11,531   adding 'jcvi/graphics/mummerplot.py'
2020-10-28T00:13:11,533   adding 'jcvi/graphics/synteny.py'
2020-10-28T00:13:11,535   adding 'jcvi/graphics/table.py'
2020-10-28T00:13:11,538   adding 'jcvi/graphics/tree.py'
2020-10-28T00:13:11,540   adding 'jcvi/graphics/wheel.py'
2020-10-28T00:13:11,541   adding 'jcvi/graphics/whisker.py'
2020-10-28T00:13:11,543   adding 'jcvi/projects/__init__.py'
2020-10-28T00:13:11,544   adding 'jcvi/projects/__main__.py'
2020-10-28T00:13:11,546   adding 'jcvi/projects/age.py'
2020-10-28T00:13:11,548   adding 'jcvi/projects/alfalfa.py'
2020-10-28T00:13:11,551   adding 'jcvi/projects/allmaps.py'
2020-10-28T00:13:11,553   adding 'jcvi/projects/bites.py'
2020-10-28T00:13:11,554   adding 'jcvi/projects/heterosis.py'
2020-10-28T00:13:11,556   adding 'jcvi/projects/ies.py'
2020-10-28T00:13:11,559   adding 'jcvi/projects/misc.py'
2020-10-28T00:13:11,563   adding 'jcvi/projects/napus.py'
2020-10-28T00:13:11,565   adding 'jcvi/projects/pineapple.py'
2020-10-28T00:13:11,566   adding 'jcvi/projects/pistachio.py'
2020-10-28T00:13:11,574   adding 'jcvi/projects/str.py'
2020-10-28T00:13:11,578   adding 'jcvi/projects/synfind.py'
2020-10-28T00:13:11,581   adding 'jcvi/projects/tgbs.py'
2020-10-28T00:13:11,583   adding 'jcvi/utils/__init__.py'
2020-10-28T00:13:11,584   adding 'jcvi/utils/__main__.py'
2020-10-28T00:13:11,587   adding 'jcvi/utils/aws.py'
2020-10-28T00:13:11,590   adding 'jcvi/utils/brewer2mpl.py'
2020-10-28T00:13:11,592   adding 'jcvi/utils/cbook.py'
2020-10-28T00:13:11,594   adding 'jcvi/utils/counter.py'
2020-10-28T00:13:11,596   adding 'jcvi/utils/db.py'
2020-10-28T00:13:11,598   adding 'jcvi/utils/ez_setup.py'
2020-10-28T00:13:11,599   adding 'jcvi/utils/grouper.py'
2020-10-28T00:13:11,601   adding 'jcvi/utils/iter.py'
2020-10-28T00:13:11,603   adding 'jcvi/utils/natsort.py'
2020-10-28T00:13:11,605   adding 'jcvi/utils/orderedcollections.py'
2020-10-28T00:13:11,608   adding 'jcvi/utils/progressbar.py'
2020-10-28T00:13:11,610   adding 'jcvi/utils/range.py'
2020-10-28T00:13:11,612   adding 'jcvi/utils/table.py'
2020-10-28T00:13:11,613   adding 'jcvi/utils/taxonomy.py'
2020-10-28T00:13:11,617   adding 'jcvi/utils/webcolors.py'
2020-10-28T00:13:11,620   adding 'jcvi/utils/data/Airswing.ttf'
2020-10-28T00:13:11,636   adding 'jcvi/utils/data/Collegia.ttf'
2020-10-28T00:13:11,640   adding 'jcvi/utils/data/HookedUp.ttf'
2020-10-28T00:13:11,645   adding 'jcvi/utils/data/Humor-Sans.ttf'
2020-10-28T00:13:11,649   adding 'jcvi/utils/data/TREDs.meta.csv'
2020-10-28T00:13:11,650   adding 'jcvi/utils/data/__init__.py'
2020-10-28T00:13:11,652   adding 'jcvi/utils/data/adapters.fasta'
2020-10-28T00:13:11,653   adding 'jcvi/utils/data/blosum80.mat'
2020-10-28T00:13:11,655   adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc'
2020-10-28T00:13:11,660   adding 'jcvi/utils/data/colorbrewer_all_schemes.json'
2020-10-28T00:13:11,662   adding 'jcvi/utils/data/colorchecker.txt'
2020-10-28T00:13:11,667   adding 'jcvi/utils/data/hg38.band.txt'
2020-10-28T00:13:11,670   adding 'jcvi/utils/data/hg38.chrom.sizes'
2020-10-28T00:13:11,671   adding 'jcvi/utils/data/instance.json'
2020-10-28T00:13:11,673   adding 'jcvi/variation/__init__.py'
2020-10-28T00:13:11,674   adding 'jcvi/variation/__main__.py'
2020-10-28T00:13:11,679   adding 'jcvi/variation/cnv.py'
2020-10-28T00:13:11,681   adding 'jcvi/variation/deconvolute.py'
2020-10-28T00:13:11,683   adding 'jcvi/variation/delly.py'
2020-10-28T00:13:11,684   adding 'jcvi/variation/impute.py'
2020-10-28T00:13:11,686   adding 'jcvi/variation/phase.py'
2020-10-28T00:13:11,688   adding 'jcvi/variation/snp.py'
2020-10-28T00:13:11,694   adding 'jcvi/variation/str.py'
2020-10-28T00:13:11,695   adding 'jcvi/variation/tassel.py'
2020-10-28T00:13:11,698   adding 'jcvi-1.0.10.dist-info/LICENSE'
2020-10-28T00:13:11,700   adding 'jcvi-1.0.10.dist-info/METADATA'
2020-10-28T00:13:11,701   adding 'jcvi-1.0.10.dist-info/WHEEL'
2020-10-28T00:13:11,702   adding 'jcvi-1.0.10.dist-info/top_level.txt'
2020-10-28T00:13:11,704   adding 'jcvi-1.0.10.dist-info/RECORD'
2020-10-28T00:13:11,725   removing build/bdist.linux-armv7l/wheel
2020-10-28T00:13:12,054   Building wheel for jcvi (setup.py): finished with status 'done'
2020-10-28T00:13:12,069   Created wheel for jcvi: filename=jcvi-1.0.10-cp37-cp37m-linux_armv7l.whl size=1207703 sha256=6391f7f586075815d58867458aeabcc5b84b9c59ff4374cc41d7ee5a2bc7ecef
2020-10-28T00:13:12,069   Stored in directory: /tmp/pip-ephem-wheel-cache-40uv1aer/wheels/59/9b/42/3c01c219b9d75e75dfe0256f6db9d287d9739f583161287414
2020-10-28T00:13:12,071 Successfully built jcvi
2020-10-28T00:13:12,122 Removed build tracker: '/tmp/pip-req-tracker-oqhw2yeq'