2020-11-05T16:10:29,346 Created temporary directory: /tmp/pip-ephem-wheel-cache-aq4365jh 2020-11-05T16:10:29,349 Created temporary directory: /tmp/pip-req-tracker-dfxbfo9_ 2020-11-05T16:10:29,349 Initialized build tracking at /tmp/pip-req-tracker-dfxbfo9_ 2020-11-05T16:10:29,349 Created build tracker: /tmp/pip-req-tracker-dfxbfo9_ 2020-11-05T16:10:29,349 Entered build tracker: /tmp/pip-req-tracker-dfxbfo9_ 2020-11-05T16:10:29,350 Created temporary directory: /tmp/pip-wheel-4mb2y8og 2020-11-05T16:10:29,361 1 location(s) to search for versions of jcvi: 2020-11-05T16:10:29,361 * https://pypi.org/simple/jcvi/ 2020-11-05T16:10:29,362 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2020-11-05T16:10:29,362 Getting page https://pypi.org/simple/jcvi/ 2020-11-05T16:10:29,364 Found index url https://pypi.org/simple 2020-11-05T16:10:29,477 Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7 2020-11-05T16:10:29,477 Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8 2020-11-05T16:10:29,477 Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9 2020-11-05T16:10:29,478 Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10 2020-11-05T16:10:29,478 Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12 2020-11-05T16:10:29,478 Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1 2020-11-05T16:10:29,479 Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2 2020-11-05T16:10:29,479 Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3 2020-11-05T16:10:29,479 Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5 2020-11-05T16:10:29,480 Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6 2020-11-05T16:10:29,480 Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7 2020-11-05T16:10:29,480 Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8 2020-11-05T16:10:29,481 Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9 2020-11-05T16:10:29,481 Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1 2020-11-05T16:10:29,481 Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2 2020-11-05T16:10:29,482 Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6 2020-11-05T16:10:29,482 Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9 2020-11-05T16:10:29,482 Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1 2020-11-05T16:10:29,482 Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3 2020-11-05T16:10:29,483 Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4 2020-11-05T16:10:29,483 Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5 2020-11-05T16:10:29,483 Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6 2020-11-05T16:10:29,484 Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7 2020-11-05T16:10:29,484 Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4 2020-11-05T16:10:29,484 Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12 2020-11-05T16:10:29,485 Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6 2020-11-05T16:10:29,485 Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9 2020-11-05T16:10:29,485 Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10 2020-11-05T16:10:29,485 Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11 2020-11-05T16:10:29,486 Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12 2020-11-05T16:10:29,486 Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13 2020-11-05T16:10:29,486 Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14 2020-11-05T16:10:29,487 Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1 2020-11-05T16:10:29,487 Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2020-11-05T16:10:29,487 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2020-11-05T16:10:29,488 Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4 2020-11-05T16:10:29,488 Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2020-11-05T16:10:29,488 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2020-11-05T16:10:29,488 Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7 2020-11-05T16:10:29,489 Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8 2020-11-05T16:10:29,489 Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9 2020-11-05T16:10:29,489 Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10 2020-11-05T16:10:29,490 Found link https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 (from https://pypi.org/simple/jcvi/), version: 1.0.11 2020-11-05T16:10:29,500 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2020-11-05T16:10:29,501 Using version 1.0.11 (newest of versions: 1.0.11) 2020-11-05T16:10:29,504 Collecting jcvi==1.0.11 2020-11-05T16:10:29,506 Created temporary directory: /tmp/pip-unpack-v14xcc96 2020-11-05T16:10:29,551 Downloading jcvi-1.0.11.tar.gz (841 kB) 2020-11-05T16:10:30,326 Added jcvi==1.0.11 from https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 to build tracker '/tmp/pip-req-tracker-dfxbfo9_' 2020-11-05T16:10:30,327 Running setup.py (path:/tmp/pip-wheel-4mb2y8og/jcvi/setup.py) egg_info for package jcvi 2020-11-05T16:10:30,327 Created temporary directory: /tmp/pip-pip-egg-info-ugzgbl2m 2020-11-05T16:10:30,328 Running command python setup.py egg_info 2020-11-05T16:10:31,943 running egg_info 2020-11-05T16:10:31,946 creating /tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info 2020-11-05T16:10:31,948 writing /tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info/PKG-INFO 2020-11-05T16:10:31,952 writing dependency_links to /tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info/dependency_links.txt 2020-11-05T16:10:31,954 writing requirements to /tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info/requires.txt 2020-11-05T16:10:31,956 writing top-level names to /tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info/top_level.txt 2020-11-05T16:10:31,958 writing manifest file '/tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info/SOURCES.txt' 2020-11-05T16:10:31,982 reading manifest file '/tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info/SOURCES.txt' 2020-11-05T16:10:31,984 reading manifest template 'MANIFEST.in' 2020-11-05T16:10:31,998 writing manifest file '/tmp/pip-pip-egg-info-ugzgbl2m/jcvi.egg-info/SOURCES.txt' 2020-11-05T16:10:31,1000 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.11' to '1.0.11' 2020-11-05T16:10:31,1000 warnings.warn(tmpl.format(**locals())) 2020-11-05T16:10:32,093 Source in /tmp/pip-wheel-4mb2y8og/jcvi has version 1.0.11, which satisfies requirement jcvi==1.0.11 from https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 2020-11-05T16:10:32,094 Removed jcvi==1.0.11 from https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 from build tracker '/tmp/pip-req-tracker-dfxbfo9_' 2020-11-05T16:10:32,097 Building wheels for collected packages: jcvi 2020-11-05T16:10:32,102 Created temporary directory: /tmp/pip-wheel-vtd_kjhq 2020-11-05T16:10:32,102 Building wheel for jcvi (setup.py): started 2020-11-05T16:10:32,102 Destination directory: /tmp/pip-wheel-vtd_kjhq 2020-11-05T16:10:32,103 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4mb2y8og/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4mb2y8og/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vtd_kjhq 2020-11-05T16:10:33,587 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.11' to '1.0.11' 2020-11-05T16:10:33,588 warnings.warn(tmpl.format(**locals())) 2020-11-05T16:10:33,643 running bdist_wheel 2020-11-05T16:10:33,649 running build 2020-11-05T16:10:33,649 running build_py 2020-11-05T16:10:33,655 creating build 2020-11-05T16:10:33,656 creating build/lib.linux-armv7l-3.7 2020-11-05T16:10:33,657 creating build/lib.linux-armv7l-3.7/jcvi 2020-11-05T16:10:33,658 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2020-11-05T16:10:33,660 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2020-11-05T16:10:33,662 creating build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,663 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,665 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,667 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,669 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,672 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,675 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,678 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,680 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,682 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,685 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-05T16:10:33,689 creating build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,691 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,696 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,698 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,703 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,706 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,708 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,711 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,717 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,720 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,723 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,726 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,729 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,733 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,735 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,738 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,741 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,744 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,747 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,749 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,752 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,754 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,757 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,759 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,764 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,766 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,769 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,771 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,774 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,906 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,914 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:33,919 creating build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,921 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,924 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,929 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,934 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,936 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,939 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,941 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,944 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,947 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,950 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,953 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-05T16:10:33,960 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,961 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,964 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,966 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,969 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,971 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,974 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,978 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,982 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,985 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,988 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,991 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:33,997 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,003 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,007 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,011 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,015 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,018 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,021 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,025 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,029 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,031 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,034 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,037 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,041 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,045 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,048 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,053 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,058 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,059 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,062 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,064 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,067 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,070 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,074 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,077 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,080 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,084 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,087 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,091 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,095 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,098 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,101 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,104 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,106 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,109 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,111 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,115 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,118 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,121 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,123 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,126 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-05T16:10:34,131 creating build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,133 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,136 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,140 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,142 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,145 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,149 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,151 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,158 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,160 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,163 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,167 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,170 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,173 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,177 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,180 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-05T16:10:34,185 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,186 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,189 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,193 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,196 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,199 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,202 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,205 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,208 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,211 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,214 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,217 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,220 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-05T16:10:34,226 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,227 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,229 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,233 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,236 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,238 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,241 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,244 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,247 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,249 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,251 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,254 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,258 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-05T16:10:34,262 creating build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,263 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,266 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,268 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,271 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,274 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,277 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,281 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,284 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,287 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,291 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,294 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,297 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,300 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,303 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,305 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,308 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,311 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-05T16:10:34,317 creating build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,318 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,321 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,323 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,326 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,329 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,332 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,335 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,338 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,342 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,347 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,351 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,355 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,359 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,361 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,364 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,366 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,369 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,372 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,378 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,380 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,384 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,387 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,390 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,393 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,395 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,398 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,402 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,405 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-05T16:10:34,408 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,410 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,412 running egg_info 2020-11-05T16:10:34,422 writing jcvi.egg-info/PKG-INFO 2020-11-05T16:10:34,425 writing dependency_links to jcvi.egg-info/dependency_links.txt 2020-11-05T16:10:34,427 writing requirements to jcvi.egg-info/requires.txt 2020-11-05T16:10:34,429 writing top-level names to jcvi.egg-info/top_level.txt 2020-11-05T16:10:34,451 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-05T16:10:34,458 reading manifest template 'MANIFEST.in' 2020-11-05T16:10:34,474 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-05T16:10:34,481 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:34,485 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:34,487 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,490 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,496 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,500 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,504 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,508 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,510 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,513 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,516 copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,522 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,525 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,530 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,534 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-05T16:10:34,554 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2020-11-05T16:10:34,556 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.11' 2020-11-05T16:10:34,557 running build_ext 2020-11-05T16:10:34,644 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2020-11-05T16:10:35,240 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4mb2y8og/jcvi/jcvi/assembly/chic.pyx 2020-11-05T16:10:35,241 tree = Parsing.p_module(s, pxd, full_module_name) 2020-11-05T16:10:36,935 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2020-11-05T16:10:37,597 building 'jcvi.assembly.chic' extension 2020-11-05T16:10:37,598 creating build/temp.linux-armv7l-3.7 2020-11-05T16:10:37,598 creating build/temp.linux-armv7l-3.7/jcvi 2020-11-05T16:10:37,599 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2020-11-05T16:10:37,600 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2020-11-05T16:10:37,988 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-11-05T16:10:37,988 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-11-05T16:10:37,989 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-11-05T16:10:37,989 from jcvi/assembly/chic.c:610: 2020-11-05T16:10:37,989 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-11-05T16:10:37,990 #warning "Using deprecated NumPy API, disable it with " \ 2020-11-05T16:10:37,990 ^~~~~~~ 2020-11-05T16:10:41,592 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2020-11-05T16:10:41,740 building 'jcvi.formats.cblast' extension 2020-11-05T16:10:41,741 creating build/temp.linux-armv7l-3.7/jcvi/formats 2020-11-05T16:10:41,741 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2020-11-05T16:10:48,938 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2020-11-05T16:10:49,109 installing to build/bdist.linux-armv7l/wheel 2020-11-05T16:10:49,109 running install 2020-11-05T16:10:49,110 running install_lib 2020-11-05T16:10:49,114 creating build/bdist.linux-armv7l 2020-11-05T16:10:49,115 creating build/bdist.linux-armv7l/wheel 2020-11-05T16:10:49,118 creating build/bdist.linux-armv7l/wheel/jcvi 2020-11-05T16:10:49,120 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,121 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,123 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,126 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,130 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,132 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,136 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,139 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,141 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,144 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,147 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-05T16:10:49,150 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-05T16:10:49,154 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,155 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,158 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,160 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,165 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,181 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,183 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,186 copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,188 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,195 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,198 copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,201 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,204 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,206 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,210 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,214 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,216 copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,219 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,223 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,225 copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,228 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,231 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,234 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,236 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,238 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,241 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,246 copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,249 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,252 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,255 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,257 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,263 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,268 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-05T16:10:49,271 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,272 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,274 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,278 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,281 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,285 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,287 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,290 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,293 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,296 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,299 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,302 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-05T16:10:49,308 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,309 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,312 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,314 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,316 copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,318 copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,321 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,324 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,327 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,330 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,333 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,336 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,339 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,344 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,349 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,352 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,355 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,359 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,361 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,364 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,366 copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,369 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,371 copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,374 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,377 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,379 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,389 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,393 copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,396 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,399 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-05T16:10:49,403 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,404 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,406 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,408 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,411 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,414 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,416 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,419 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,422 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,425 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,428 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,431 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,434 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,438 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,440 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,443 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,445 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,447 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,449 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,452 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,455 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,457 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,459 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,461 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-05T16:10:49,466 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,466 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,469 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,472 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,474 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,476 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,480 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,482 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,486 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,488 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,491 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,494 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,497 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,499 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,503 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,505 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-05T16:10:49,509 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,510 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,512 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,515 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,518 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,521 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,523 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,527 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,529 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,532 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,535 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,537 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,541 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-05T16:10:49,546 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,547 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,549 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,552 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,554 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,557 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,560 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,562 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,564 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,566 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,569 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,571 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,574 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-05T16:10:49,577 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-05T16:10:49,580 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,583 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,584 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,587 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,593 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,595 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,601 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,604 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,607 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,609 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,613 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,615 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,619 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,622 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,624 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,627 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-05T16:10:49,630 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,632 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,634 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,636 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,639 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,642 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,645 copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,647 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,651 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,653 copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,656 copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,658 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,661 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,663 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,666 copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,669 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,672 copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-05T16:10:49,677 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,679 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,682 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,684 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,687 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,690 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,693 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,695 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,697 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,701 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,705 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,708 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,711 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,714 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,716 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,719 copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,721 copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,724 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,726 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,731 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,733 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,736 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,738 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,740 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,742 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,745 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,748 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,751 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,754 copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-05T16:10:49,756 running install_egg_info 2020-11-05T16:10:49,773 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.11-py3.7.egg-info 2020-11-05T16:10:49,789 running install_scripts 2020-11-05T16:10:49,853 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-11-05T16:10:49,859 creating build/bdist.linux-armv7l/wheel/jcvi-1.0.11.dist-info/WHEEL 2020-11-05T16:10:49,862 creating '/tmp/pip-wheel-vtd_kjhq/jcvi-1.0.11-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-11-05T16:10:49,865 adding 'jcvi/__init__.py' 2020-11-05T16:10:49,866 adding 'jcvi/_version.py' 2020-11-05T16:10:49,868 adding 'jcvi/algorithms/__init__.py' 2020-11-05T16:10:49,869 adding 'jcvi/algorithms/__main__.py' 2020-11-05T16:10:49,871 adding 'jcvi/algorithms/ec.py' 2020-11-05T16:10:49,873 adding 'jcvi/algorithms/formula.py' 2020-11-05T16:10:49,875 adding 'jcvi/algorithms/graph.py' 2020-11-05T16:10:49,877 adding 'jcvi/algorithms/lis.py' 2020-11-05T16:10:49,880 adding 'jcvi/algorithms/lpsolve.py' 2020-11-05T16:10:49,882 adding 'jcvi/algorithms/matrix.py' 2020-11-05T16:10:49,883 adding 'jcvi/algorithms/maxsum.py' 2020-11-05T16:10:49,885 adding 'jcvi/algorithms/ml.py' 2020-11-05T16:10:49,886 adding 'jcvi/algorithms/supermap.py' 2020-11-05T16:10:49,888 adding 'jcvi/algorithms/tsp.py' 2020-11-05T16:10:49,890 adding 'jcvi/annotation/__init__.py' 2020-11-05T16:10:49,891 adding 'jcvi/annotation/__main__.py' 2020-11-05T16:10:49,894 adding 'jcvi/annotation/ahrd.py' 2020-11-05T16:10:49,896 adding 'jcvi/annotation/automaton.py' 2020-11-05T16:10:49,898 adding 'jcvi/annotation/depth.py' 2020-11-05T16:10:49,900 adding 'jcvi/annotation/evm.py' 2020-11-05T16:10:49,902 adding 'jcvi/annotation/maker.py' 2020-11-05T16:10:49,905 adding 'jcvi/annotation/pasa.py' 2020-11-05T16:10:49,907 adding 'jcvi/annotation/qc.py' 2020-11-05T16:10:49,913 adding 'jcvi/annotation/reformat.py' 2020-11-05T16:10:49,916 adding 'jcvi/annotation/stats.py' 2020-11-05T16:10:49,917 adding 'jcvi/annotation/train.py' 2020-11-05T16:10:49,920 adding 'jcvi/apps/__init__.py' 2020-11-05T16:10:49,921 adding 'jcvi/apps/__main__.py' 2020-11-05T16:10:49,924 adding 'jcvi/apps/align.py' 2020-11-05T16:10:49,933 adding 'jcvi/apps/base.py' 2020-11-05T16:10:49,935 adding 'jcvi/apps/biomart.py' 2020-11-05T16:10:49,937 adding 'jcvi/apps/blastplus.py' 2020-11-05T16:10:49,939 adding 'jcvi/apps/bowtie.py' 2020-11-05T16:10:49,940 adding 'jcvi/apps/bwa.py' 2020-11-05T16:10:49,942 adding 'jcvi/apps/cap3.py' 2020-11-05T16:10:49,944 adding 'jcvi/apps/cdhit.py' 2020-11-05T16:10:49,946 adding 'jcvi/apps/console.py' 2020-11-05T16:10:49,947 adding 'jcvi/apps/emboss.py' 2020-11-05T16:10:49,950 adding 'jcvi/apps/fetch.py' 2020-11-05T16:10:49,953 adding 'jcvi/apps/gbsubmit.py' 2020-11-05T16:10:49,955 adding 'jcvi/apps/gmap.py' 2020-11-05T16:10:49,958 adding 'jcvi/apps/grid.py' 2020-11-05T16:10:49,963 adding 'jcvi/apps/ks.py' 2020-11-05T16:10:49,965 adding 'jcvi/apps/lastz.py' 2020-11-05T16:10:49,966 adding 'jcvi/apps/mask.py' 2020-11-05T16:10:49,971 adding 'jcvi/apps/phylo.py' 2020-11-05T16:10:49,973 adding 'jcvi/apps/r.py' 2020-11-05T16:10:49,974 adding 'jcvi/apps/restriction.py' 2020-11-05T16:10:49,976 adding 'jcvi/apps/script.py' 2020-11-05T16:10:49,977 adding 'jcvi/apps/softlink.py' 2020-11-05T16:10:49,979 adding 'jcvi/apps/tesseract.py' 2020-11-05T16:10:49,983 adding 'jcvi/apps/uclust.py' 2020-11-05T16:10:49,985 adding 'jcvi/apps/uniprot.py' 2020-11-05T16:10:49,987 adding 'jcvi/apps/vecscreen.py' 2020-11-05T16:10:49,989 adding 'jcvi/assembly/__init__.py' 2020-11-05T16:10:49,991 adding 'jcvi/assembly/__main__.py' 2020-11-05T16:10:50,000 adding 'jcvi/assembly/allmaps.py' 2020-11-05T16:10:50,003 adding 'jcvi/assembly/allpaths.py' 2020-11-05T16:10:50,005 adding 'jcvi/assembly/amos.py' 2020-11-05T16:10:50,007 adding 'jcvi/assembly/automaton.py' 2020-11-05T16:10:50,009 adding 'jcvi/assembly/bambus.py' 2020-11-05T16:10:50,011 adding 'jcvi/assembly/base.py' 2020-11-05T16:10:50,016 adding 'jcvi/assembly/ca.py' 2020-11-05T16:10:50,064 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2020-11-05T16:10:50,067 adding 'jcvi/assembly/chic.pyx' 2020-11-05T16:10:50,068 adding 'jcvi/assembly/coverage.py' 2020-11-05T16:10:50,070 adding 'jcvi/assembly/gaps.py' 2020-11-05T16:10:50,073 adding 'jcvi/assembly/geneticmap.py' 2020-11-05T16:10:50,078 adding 'jcvi/assembly/goldenpath.py' 2020-11-05T16:10:50,087 adding 'jcvi/assembly/hic.py' 2020-11-05T16:10:50,092 adding 'jcvi/assembly/kmer.py' 2020-11-05T16:10:50,094 adding 'jcvi/assembly/meraculous.py' 2020-11-05T16:10:50,096 adding 'jcvi/assembly/opticalmap.py' 2020-11-05T16:10:50,100 adding 'jcvi/assembly/patch.py' 2020-11-05T16:10:50,103 adding 'jcvi/assembly/pbjelly.py' 2020-11-05T16:10:50,105 adding 'jcvi/assembly/postprocess.py' 2020-11-05T16:10:50,108 adding 'jcvi/assembly/preprocess.py' 2020-11-05T16:10:50,110 adding 'jcvi/assembly/sim.py' 2020-11-05T16:10:50,112 adding 'jcvi/assembly/soap.py' 2020-11-05T16:10:50,114 adding 'jcvi/assembly/sspace.py' 2020-11-05T16:10:50,116 adding 'jcvi/assembly/syntenypath.py' 2020-11-05T16:10:50,118 adding 'jcvi/assembly/trinity.py' 2020-11-05T16:10:50,120 adding 'jcvi/assembly/unitig.py' 2020-11-05T16:10:50,122 adding 'jcvi/compara/__init__.py' 2020-11-05T16:10:50,124 adding 'jcvi/compara/__main__.py' 2020-11-05T16:10:50,126 adding 'jcvi/compara/blastfilter.py' 2020-11-05T16:10:50,129 adding 'jcvi/compara/catalog.py' 2020-11-05T16:10:50,133 adding 'jcvi/compara/fractionation.py' 2020-11-05T16:10:50,135 adding 'jcvi/compara/pad.py' 2020-11-05T16:10:50,137 adding 'jcvi/compara/phylogeny.py' 2020-11-05T16:10:50,139 adding 'jcvi/compara/quota.py' 2020-11-05T16:10:50,141 adding 'jcvi/compara/reconstruct.py' 2020-11-05T16:10:50,143 adding 'jcvi/compara/synfind.py' 2020-11-05T16:10:50,152 adding 'jcvi/compara/synteny.py' 2020-11-05T16:10:50,155 adding 'jcvi/formats/__init__.py' 2020-11-05T16:10:50,156 adding 'jcvi/formats/__main__.py' 2020-11-05T16:10:50,158 adding 'jcvi/formats/ace.py' 2020-11-05T16:10:50,165 adding 'jcvi/formats/agp.py' 2020-11-05T16:10:50,171 adding 'jcvi/formats/base.py' 2020-11-05T16:10:50,181 adding 'jcvi/formats/bed.py' 2020-11-05T16:10:50,187 adding 'jcvi/formats/blast.py' 2020-11-05T16:10:50,189 adding 'jcvi/formats/btab.py' 2020-11-05T16:10:50,292 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2020-11-05T16:10:50,296 adding 'jcvi/formats/cblast.pyx' 2020-11-05T16:10:50,298 adding 'jcvi/formats/cdt.py' 2020-11-05T16:10:50,300 adding 'jcvi/formats/chain.py' 2020-11-05T16:10:50,301 adding 'jcvi/formats/contig.py' 2020-11-05T16:10:50,304 adding 'jcvi/formats/coords.py' 2020-11-05T16:10:50,305 adding 'jcvi/formats/excel.py' 2020-11-05T16:10:50,315 adding 'jcvi/formats/fasta.py' 2020-11-05T16:10:50,320 adding 'jcvi/formats/fastq.py' 2020-11-05T16:10:50,322 adding 'jcvi/formats/fpc.py' 2020-11-05T16:10:50,324 adding 'jcvi/formats/genbank.py' 2020-11-05T16:10:50,339 adding 'jcvi/formats/gff.py' 2020-11-05T16:10:50,341 adding 'jcvi/formats/html.py' 2020-11-05T16:10:50,343 adding 'jcvi/formats/maf.py' 2020-11-05T16:10:50,344 adding 'jcvi/formats/obo.py' 2020-11-05T16:10:50,345 adding 'jcvi/formats/paf.py' 2020-11-05T16:10:50,347 adding 'jcvi/formats/pdf.py' 2020-11-05T16:10:50,348 adding 'jcvi/formats/posmap.py' 2020-11-05T16:10:50,350 adding 'jcvi/formats/psl.py' 2020-11-05T16:10:50,352 adding 'jcvi/formats/pyblast.py' 2020-11-05T16:10:50,356 adding 'jcvi/formats/sam.py' 2020-11-05T16:10:50,358 adding 'jcvi/formats/sbt.py' 2020-11-05T16:10:50,360 adding 'jcvi/formats/sizes.py' 2020-11-05T16:10:50,363 adding 'jcvi/formats/vcf.py' 2020-11-05T16:10:50,366 adding 'jcvi/graphics/__init__.py' 2020-11-05T16:10:50,368 adding 'jcvi/graphics/__main__.py' 2020-11-05T16:10:50,370 adding 'jcvi/graphics/align.py' 2020-11-05T16:10:50,373 adding 'jcvi/graphics/assembly.py' 2020-11-05T16:10:50,376 adding 'jcvi/graphics/base.py' 2020-11-05T16:10:50,378 adding 'jcvi/graphics/blastplot.py' 2020-11-05T16:10:50,382 adding 'jcvi/graphics/chromosome.py' 2020-11-05T16:10:50,384 adding 'jcvi/graphics/coverage.py' 2020-11-05T16:10:50,386 adding 'jcvi/graphics/dotplot.py' 2020-11-05T16:10:50,389 adding 'jcvi/graphics/glyph.py' 2020-11-05T16:10:50,393 adding 'jcvi/graphics/grabseeds.py' 2020-11-05T16:10:50,395 adding 'jcvi/graphics/graph.py' 2020-11-05T16:10:50,396 adding 'jcvi/graphics/heatmap.py' 2020-11-05T16:10:50,398 adding 'jcvi/graphics/histogram.py' 2020-11-05T16:10:50,401 adding 'jcvi/graphics/karyotype.py' 2020-11-05T16:10:50,405 adding 'jcvi/graphics/landscape.py' 2020-11-05T16:10:50,406 adding 'jcvi/graphics/logo.py' 2020-11-05T16:10:50,408 adding 'jcvi/graphics/mummerplot.py' 2020-11-05T16:10:50,411 adding 'jcvi/graphics/synteny.py' 2020-11-05T16:10:50,413 adding 'jcvi/graphics/table.py' 2020-11-05T16:10:50,416 adding 'jcvi/graphics/tree.py' 2020-11-05T16:10:50,417 adding 'jcvi/graphics/wheel.py' 2020-11-05T16:10:50,419 adding 'jcvi/graphics/whisker.py' 2020-11-05T16:10:50,421 adding 'jcvi/projects/__init__.py' 2020-11-05T16:10:50,422 adding 'jcvi/projects/__main__.py' 2020-11-05T16:10:50,425 adding 'jcvi/projects/age.py' 2020-11-05T16:10:50,427 adding 'jcvi/projects/alfalfa.py' 2020-11-05T16:10:50,429 adding 'jcvi/projects/allmaps.py' 2020-11-05T16:10:50,431 adding 'jcvi/projects/bites.py' 2020-11-05T16:10:50,433 adding 'jcvi/projects/heterosis.py' 2020-11-05T16:10:50,435 adding 'jcvi/projects/ies.py' 2020-11-05T16:10:50,438 adding 'jcvi/projects/misc.py' 2020-11-05T16:10:50,442 adding 'jcvi/projects/napus.py' 2020-11-05T16:10:50,444 adding 'jcvi/projects/pineapple.py' 2020-11-05T16:10:50,446 adding 'jcvi/projects/pistachio.py' 2020-11-05T16:10:50,454 adding 'jcvi/projects/str.py' 2020-11-05T16:10:50,458 adding 'jcvi/projects/synfind.py' 2020-11-05T16:10:50,461 adding 'jcvi/projects/tgbs.py' 2020-11-05T16:10:50,463 adding 'jcvi/utils/__init__.py' 2020-11-05T16:10:50,465 adding 'jcvi/utils/__main__.py' 2020-11-05T16:10:50,468 adding 'jcvi/utils/aws.py' 2020-11-05T16:10:50,470 adding 'jcvi/utils/brewer2mpl.py' 2020-11-05T16:10:50,473 adding 'jcvi/utils/cbook.py' 2020-11-05T16:10:50,474 adding 'jcvi/utils/counter.py' 2020-11-05T16:10:50,476 adding 'jcvi/utils/db.py' 2020-11-05T16:10:50,479 adding 'jcvi/utils/ez_setup.py' 2020-11-05T16:10:50,480 adding 'jcvi/utils/grouper.py' 2020-11-05T16:10:50,482 adding 'jcvi/utils/iter.py' 2020-11-05T16:10:50,484 adding 'jcvi/utils/natsort.py' 2020-11-05T16:10:50,486 adding 'jcvi/utils/orderedcollections.py' 2020-11-05T16:10:50,490 adding 'jcvi/utils/progressbar.py' 2020-11-05T16:10:50,492 adding 'jcvi/utils/range.py' 2020-11-05T16:10:50,494 adding 'jcvi/utils/table.py' 2020-11-05T16:10:50,495 adding 'jcvi/utils/taxonomy.py' 2020-11-05T16:10:50,499 adding 'jcvi/utils/webcolors.py' 2020-11-05T16:10:50,503 adding 'jcvi/utils/data/Airswing.ttf' 2020-11-05T16:10:50,520 adding 'jcvi/utils/data/Collegia.ttf' 2020-11-05T16:10:50,524 adding 'jcvi/utils/data/HookedUp.ttf' 2020-11-05T16:10:50,529 adding 'jcvi/utils/data/Humor-Sans.ttf' 2020-11-05T16:10:50,535 adding 'jcvi/utils/data/TREDs.meta.csv' 2020-11-05T16:10:50,536 adding 'jcvi/utils/data/__init__.py' 2020-11-05T16:10:50,537 adding 'jcvi/utils/data/adapters.fasta' 2020-11-05T16:10:50,539 adding 'jcvi/utils/data/blosum80.mat' 2020-11-05T16:10:50,541 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2020-11-05T16:10:50,546 adding 'jcvi/utils/data/colorbrewer_all_schemes.json' 2020-11-05T16:10:50,548 adding 'jcvi/utils/data/colorchecker.txt' 2020-11-05T16:10:50,554 adding 'jcvi/utils/data/hg38.band.txt' 2020-11-05T16:10:50,557 adding 'jcvi/utils/data/hg38.chrom.sizes' 2020-11-05T16:10:50,559 adding 'jcvi/utils/data/instance.json' 2020-11-05T16:10:50,561 adding 'jcvi/variation/__init__.py' 2020-11-05T16:10:50,562 adding 'jcvi/variation/__main__.py' 2020-11-05T16:10:50,567 adding 'jcvi/variation/cnv.py' 2020-11-05T16:10:50,569 adding 'jcvi/variation/deconvolute.py' 2020-11-05T16:10:50,571 adding 'jcvi/variation/delly.py' 2020-11-05T16:10:50,573 adding 'jcvi/variation/impute.py' 2020-11-05T16:10:50,574 adding 'jcvi/variation/phase.py' 2020-11-05T16:10:50,577 adding 'jcvi/variation/snp.py' 2020-11-05T16:10:50,583 adding 'jcvi/variation/str.py' 2020-11-05T16:10:50,585 adding 'jcvi/variation/tassel.py' 2020-11-05T16:10:50,587 adding 'jcvi-1.0.11.dist-info/LICENSE' 2020-11-05T16:10:50,589 adding 'jcvi-1.0.11.dist-info/METADATA' 2020-11-05T16:10:50,590 adding 'jcvi-1.0.11.dist-info/WHEEL' 2020-11-05T16:10:50,591 adding 'jcvi-1.0.11.dist-info/top_level.txt' 2020-11-05T16:10:50,594 adding 'jcvi-1.0.11.dist-info/RECORD' 2020-11-05T16:10:50,620 removing build/bdist.linux-armv7l/wheel 2020-11-05T16:10:50,955 Building wheel for jcvi (setup.py): finished with status 'done' 2020-11-05T16:10:50,972 Created wheel for jcvi: filename=jcvi-1.0.11-cp37-cp37m-linux_armv7l.whl size=1208744 sha256=cb970e10608442ad3b4ed83afebfaaef3c4c331317efdc7872cdd3dd47c3d77d 2020-11-05T16:10:50,972 Stored in directory: /tmp/pip-ephem-wheel-cache-aq4365jh/wheels/f2/68/df/f95619138c7e4cc70c09f0354ac135871b949fd061f93416ad 2020-11-05T16:10:50,975 Successfully built jcvi 2020-11-05T16:10:51,015 Removed build tracker: '/tmp/pip-req-tracker-dfxbfo9_'