2020-11-24T11:02:33,673 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-11-24T11:02:34,426 Created temporary directory: /tmp/pip-ephem-wheel-cache-g867oqmn
2020-11-24T11:02:34,431 Created temporary directory: /tmp/pip-req-tracker-n_g4xlhc
2020-11-24T11:02:34,432 Initialized build tracking at /tmp/pip-req-tracker-n_g4xlhc
2020-11-24T11:02:34,433 Created build tracker: /tmp/pip-req-tracker-n_g4xlhc
2020-11-24T11:02:34,433 Entered build tracker: /tmp/pip-req-tracker-n_g4xlhc
2020-11-24T11:02:34,435 Created temporary directory: /tmp/pip-wheel-p289gg9e
2020-11-24T11:02:34,456 1 location(s) to search for versions of sequana-variant-calling:
2020-11-24T11:02:34,456 * https://pypi.org/simple/sequana-variant-calling/
2020-11-24T11:02:34,457 Fetching project page and analyzing links: https://pypi.org/simple/sequana-variant-calling/
2020-11-24T11:02:34,459 Getting page https://pypi.org/simple/sequana-variant-calling/
2020-11-24T11:02:34,463 Found index url https://pypi.org/simple
2020-11-24T11:02:34,797   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/df/c893a08b471c537ca9941a06b711d924b5b4b10b7321128c43d940f1a3fb/sequana_variant_calling-0.8.0-py3.5.egg#sha256=b5e4b94665fd38050217d472b5f94cb3dfec255a558ed5b079b91297ed5488f1 (from https://pypi.org/simple/sequana-variant-calling/)
2020-11-24T11:02:34,798   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a5/3e/63014a9792a51a23e198e0574e32da60d8e615ac877752463ed4f5f1e147/sequana_variant_calling-0.8.1-py3.5.egg#sha256=1970e6a10c0ee8226300cb95df20e40c40ba06a6fd40f6548695779ee854909f (from https://pypi.org/simple/sequana-variant-calling/)
2020-11-24T11:02:34,799   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/30/e7/2e7052bff8e49aea35fc674af929e40b0a683f353958da50ac9133c9a1fe/sequana_variant_calling-0.8.2-py3.5.egg#sha256=db149aff23bfd974a46e2313b5ecf76a1d79c73820c71a584685e114c70156ca (from https://pypi.org/simple/sequana-variant-calling/)
2020-11-24T11:02:34,799   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/42/3f/b11c629fbd7ed8937b1c827db65017aa348fd3073c2a6aee048ddef7630b/sequana_variant_calling-0.8.3-py3.5.egg#sha256=fc7c209f8e56119239012fef93e6680e2476a14cdbce0d4e2c0171979403672f (from https://pypi.org/simple/sequana-variant-calling/)
2020-11-24T11:02:34,800   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/af/79/456b5c7ee7867d8e92821c7011a365b183806a2a350b8a4abfcaa73d0186/sequana_variant_calling-0.8.4-py3.5.egg#sha256=a344995706606ab545c2b44965c1ec54c3b3783a013b37f986ba5b3ec70c7b7a (from https://pypi.org/simple/sequana-variant-calling/)
2020-11-24T11:02:34,801   Found link https://files.pythonhosted.org/packages/c3/9b/107b8e187a492fbd3b9f95917cc57f2bc668409a7764acffaa2c59a00faf/sequana_variant_calling-0.8.4.tar.gz#sha256=ce0da3328ffbecdee7c57d16fbfb5b51b583187c5367abe602cd1b4c62bb0628 (from https://pypi.org/simple/sequana-variant-calling/), version: 0.8.4
2020-11-24T11:02:34,802   Found link https://files.pythonhosted.org/packages/25/6a/02aab9a14bbb62abdb5551bfbe7ca41c09417d5be35de222e2331c2f4012/sequana_variant_calling-0.8.5.tar.gz#sha256=79042eb9177904d69d68201907d554bb17707363c58fdde29f3bc4bdecb3e279 (from https://pypi.org/simple/sequana-variant-calling/), version: 0.8.5
2020-11-24T11:02:34,803   Found link https://files.pythonhosted.org/packages/9b/f2/1916ac0d90c12613e26047cbd2677f8da6dc7b2d258dd7cf7eaccd825c05/sequana_variant_calling-0.8.6.tar.gz#sha256=bbb4167da2cb30c729e173a97823bba0d03b3c53f8ca58ac4de1d2c3b8f89b55 (from https://pypi.org/simple/sequana-variant-calling/), version: 0.8.6
2020-11-24T11:02:34,804   Found link https://files.pythonhosted.org/packages/56/ce/2a87ecefe2f090fbd5810d65735882148fa49dcd5317795e7dae3c9c16a5/sequana_variant_calling-0.8.7.tar.gz#sha256=2ceffd1764ee7582a2716bf19aff802e8d31f6ffbfbde970f0a4d4898824c50b (from https://pypi.org/simple/sequana-variant-calling/), version: 0.8.7
2020-11-24T11:02:34,805   Found link https://files.pythonhosted.org/packages/28/26/ab4d8da4824a3b1e21a36bcbacd184073a89d2f77ca6a438415100878b1e/sequana_variant_calling-0.9.0.tar.gz#sha256=1fc59e72443c8918d60dbce689776c5c25e7031bacd49feb2b3516f6c5cc89b4 (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.0
2020-11-24T11:02:34,806   Found link https://files.pythonhosted.org/packages/1e/03/a0dd0d9a198da31809649fe4ab3ecf8177456c535014a385ed9037739a46/sequana_variant_calling-0.9.1.tar.gz#sha256=245a9395600b8ab6b6cf8b1e9b372b1e7db43512b1a6805484cf34a69fa083be (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.1
2020-11-24T11:02:34,806   Found link https://files.pythonhosted.org/packages/e1/4a/8f2c250a85c2d42109a179d71aea5c53d1d5d494fd2690cb11586bb66cfb/sequana_variant_calling-0.9.2.tar.gz#sha256=acdb47d5a1f4ea783079978456f5e72a81bae7ecc3dfb873b9d6e09959fef6f0 (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.2
2020-11-24T11:02:34,807   Found link https://files.pythonhosted.org/packages/e6/4a/a9a6144d197a3ebb4d75a7f751731375e854e79ad61cb4021399022afc8e/sequana_variant_calling-0.9.3.tar.gz#sha256=363ae32c4f152747c46b345add58e073cd9e6f93f69c99ed53f823265b4e4877 (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.3
2020-11-24T11:02:34,808   Found link https://files.pythonhosted.org/packages/e3/de/e28ecb5381b8eaf1f02bb54a7ac89bf237f7e99f70f779c1789b16f483dc/sequana_variant_calling-0.9.4.tar.gz#sha256=e978272b0610b3209fb95d8ff7a8dd799d53412b2724b5e95a4799b9c2d64f3b (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.4
2020-11-24T11:02:34,809   Found link https://files.pythonhosted.org/packages/f6/7a/2416ca01266ad1e0eb3e91bea899727e48368562ca4598f1ba4633a7154d/sequana_variant_calling-0.9.5.tar.gz#sha256=db9aeb82f6130d16c39333958a810fb008127a94b509719744b9b3c7cfe8a13f (from https://pypi.org/simple/sequana-variant-calling/), version: 0.9.5
2020-11-24T11:02:34,823 Given no hashes to check 1 links for project 'sequana-variant-calling': discarding no candidates
2020-11-24T11:02:34,824 Using version 0.9.5 (newest of versions: 0.9.5)
2020-11-24T11:02:34,833 Collecting sequana-variant-calling==0.9.5
2020-11-24T11:02:34,838   Created temporary directory: /tmp/pip-unpack-j7q8u5_w
2020-11-24T11:02:35,073   Downloading sequana_variant_calling-0.9.5.tar.gz (107 kB)
2020-11-24T11:02:35,258   Added sequana-variant-calling==0.9.5 from https://files.pythonhosted.org/packages/f6/7a/2416ca01266ad1e0eb3e91bea899727e48368562ca4598f1ba4633a7154d/sequana_variant_calling-0.9.5.tar.gz#sha256=db9aeb82f6130d16c39333958a810fb008127a94b509719744b9b3c7cfe8a13f to build tracker '/tmp/pip-req-tracker-n_g4xlhc'
2020-11-24T11:02:35,261     Running setup.py (path:/tmp/pip-wheel-p289gg9e/sequana-variant-calling/setup.py) egg_info for package sequana-variant-calling
2020-11-24T11:02:35,263     Created temporary directory: /tmp/pip-pip-egg-info-ry0l437q
2020-11-24T11:02:35,264     Running command python setup.py egg_info
2020-11-24T11:02:37,863     running egg_info
2020-11-24T11:02:37,869     creating /tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info
2020-11-24T11:02:37,871     writing dependency_links to /tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/dependency_links.txt
2020-11-24T11:02:37,874     writing /tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/PKG-INFO
2020-11-24T11:02:37,881     writing top-level names to /tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/top_level.txt
2020-11-24T11:02:37,884     writing requirements to /tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/requires.txt
2020-11-24T11:02:37,886     writing entry points to /tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/entry_points.txt
2020-11-24T11:02:37,891     writing manifest file '/tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/SOURCES.txt'
2020-11-24T11:02:38,258     reading manifest file '/tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/SOURCES.txt'
2020-11-24T11:02:38,261     reading manifest template 'MANIFEST.in'
2020-11-24T11:02:38,265     warning: no previously-included files matching '__pycache__' found under directory '*'
2020-11-24T11:02:38,266     warning: no previously-included files matching '*pyc' found under directory '*'
2020-11-24T11:02:38,309     writing manifest file '/tmp/pip-pip-egg-info-ry0l437q/sequana_variant_calling.egg-info/SOURCES.txt'
2020-11-24T11:02:38,472   Source in /tmp/pip-wheel-p289gg9e/sequana-variant-calling has version 0.9.5, which satisfies requirement sequana-variant-calling==0.9.5 from https://files.pythonhosted.org/packages/f6/7a/2416ca01266ad1e0eb3e91bea899727e48368562ca4598f1ba4633a7154d/sequana_variant_calling-0.9.5.tar.gz#sha256=db9aeb82f6130d16c39333958a810fb008127a94b509719744b9b3c7cfe8a13f
2020-11-24T11:02:38,474   Removed sequana-variant-calling==0.9.5 from https://files.pythonhosted.org/packages/f6/7a/2416ca01266ad1e0eb3e91bea899727e48368562ca4598f1ba4633a7154d/sequana_variant_calling-0.9.5.tar.gz#sha256=db9aeb82f6130d16c39333958a810fb008127a94b509719744b9b3c7cfe8a13f from build tracker '/tmp/pip-req-tracker-n_g4xlhc'
2020-11-24T11:02:38,480 Building wheels for collected packages: sequana-variant-calling
2020-11-24T11:02:38,490   Created temporary directory: /tmp/pip-wheel-br421cxq
2020-11-24T11:02:38,491   Building wheel for sequana-variant-calling (setup.py): started
2020-11-24T11:02:38,491   Destination directory: /tmp/pip-wheel-br421cxq
2020-11-24T11:02:38,492   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-p289gg9e/sequana-variant-calling/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-p289gg9e/sequana-variant-calling/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-br421cxq
2020-11-24T11:02:41,118   running bdist_wheel
2020-11-24T11:02:41,127   running build
2020-11-24T11:02:41,128   running build_py
2020-11-24T11:02:41,443   creating build
2020-11-24T11:02:41,444   creating build/lib
2020-11-24T11:02:41,445   creating build/lib/sequana_pipelines
2020-11-24T11:02:41,447   creating build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,450   copying sequana_pipelines/variant_calling/__init__.py -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,454   copying sequana_pipelines/variant_calling/main.py -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,460   creating build/lib/sequana_pipelines/variant_calling/data
2020-11-24T11:02:41,461   copying sequana_pipelines/variant_calling/data/__init__.py -> build/lib/sequana_pipelines/variant_calling/data
2020-11-24T11:02:41,479   copying sequana_pipelines/variant_calling/config.yaml -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,484   copying sequana_pipelines/variant_calling/multiqc_config.yaml -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,490   copying sequana_pipelines/variant_calling/variant_calling.rules -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,498   copying sequana_pipelines/variant_calling/requirements.txt -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,504   copying sequana_pipelines/variant_calling/dag.png -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,520   copying sequana_pipelines/variant_calling/logo.png -> build/lib/sequana_pipelines/variant_calling
2020-11-24T11:02:41,534   installing to build/bdist.linux-armv7l/wheel
2020-11-24T11:02:41,535   running install
2020-11-24T11:02:41,538   running install_lib
2020-11-24T11:02:41,546   creating build/bdist.linux-armv7l
2020-11-24T11:02:41,547   creating build/bdist.linux-armv7l/wheel
2020-11-24T11:02:41,551   creating build/bdist.linux-armv7l/wheel/sequana_pipelines
2020-11-24T11:02:41,554   creating build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,558   creating build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling/data
2020-11-24T11:02:41,560   copying build/lib/sequana_pipelines/variant_calling/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling/data
2020-11-24T11:02:41,564   copying build/lib/sequana_pipelines/variant_calling/variant_calling.rules -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,570   copying build/lib/sequana_pipelines/variant_calling/dag.png -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,585   copying build/lib/sequana_pipelines/variant_calling/logo.png -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,592   copying build/lib/sequana_pipelines/variant_calling/config.yaml -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,598   copying build/lib/sequana_pipelines/variant_calling/__init__.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,604   copying build/lib/sequana_pipelines/variant_calling/main.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,611   copying build/lib/sequana_pipelines/variant_calling/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,616   copying build/lib/sequana_pipelines/variant_calling/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana_pipelines/variant_calling
2020-11-24T11:02:41,622   running install_egg_info
2020-11-24T11:02:41,641   running egg_info
2020-11-24T11:02:41,645   writing requirements to sequana_variant_calling.egg-info/requires.txt
2020-11-24T11:02:41,648   writing top-level names to sequana_variant_calling.egg-info/top_level.txt
2020-11-24T11:02:41,650   writing entry points to sequana_variant_calling.egg-info/entry_points.txt
2020-11-24T11:02:41,652   writing dependency_links to sequana_variant_calling.egg-info/dependency_links.txt
2020-11-24T11:02:41,655   writing sequana_variant_calling.egg-info/PKG-INFO
2020-11-24T11:02:41,676   reading manifest file 'sequana_variant_calling.egg-info/SOURCES.txt'
2020-11-24T11:02:41,684   reading manifest template 'MANIFEST.in'
2020-11-24T11:02:41,687   warning: no previously-included files matching '__pycache__' found under directory '*'
2020-11-24T11:02:41,688   warning: no previously-included files matching '*pyc' found under directory '*'
2020-11-24T11:02:41,773   writing manifest file 'sequana_variant_calling.egg-info/SOURCES.txt'
2020-11-24T11:02:41,776   Copying sequana_variant_calling.egg-info to build/bdist.linux-armv7l/wheel/sequana_variant_calling-0.9.5-py3.5.egg-info
2020-11-24T11:02:41,817   running install_scripts
2020-11-24T11:02:41,895   creating build/bdist.linux-armv7l/wheel/sequana_variant_calling-0.9.5.dist-info/WHEEL
2020-11-24T11:02:42,170   Building wheel for sequana-variant-calling (setup.py): finished with status 'done'
2020-11-24T11:02:42,176   Created wheel for sequana-variant-calling: filename=sequana_variant_calling-0.9.5-py3-none-any.whl size=107488 sha256=d81286932c2c6d2e4da09fd160f9d3a7f0632bcbfb3349f445ab8a6c4a788888
2020-11-24T11:02:42,177   Stored in directory: /tmp/pip-ephem-wheel-cache-g867oqmn/wheels/55/e1/45/da41dc9a87500794869ba8626257deeb258ec3572ba39b8ce1
2020-11-24T11:02:42,181 Successfully built sequana-variant-calling
2020-11-24T11:02:42,207 Removed build tracker: '/tmp/pip-req-tracker-n_g4xlhc'