2020-11-24T11:07:08,047 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-11-24T11:07:08,716 Created temporary directory: /tmp/pip-ephem-wheel-cache-mcrfwwtq 2020-11-24T11:07:08,721 Created temporary directory: /tmp/pip-req-tracker-wzlgkr2b 2020-11-24T11:07:08,722 Initialized build tracking at /tmp/pip-req-tracker-wzlgkr2b 2020-11-24T11:07:08,723 Created build tracker: /tmp/pip-req-tracker-wzlgkr2b 2020-11-24T11:07:08,723 Entered build tracker: /tmp/pip-req-tracker-wzlgkr2b 2020-11-24T11:07:08,724 Created temporary directory: /tmp/pip-wheel-m9mlhvm9 2020-11-24T11:07:08,743 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2020-11-24T11:07:08,746 2 location(s) to search for versions of sequana: 2020-11-24T11:07:08,746 * https://pypi.org/simple/sequana/ 2020-11-24T11:07:08,746 * https://pypi.ngc.nvidia.com/sequana/ 2020-11-24T11:07:08,747 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2020-11-24T11:07:08,749 Getting page https://pypi.org/simple/sequana/ 2020-11-24T11:07:08,753 Found index url https://pypi.org/simple 2020-11-24T11:07:09,155 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz#sha256=5a68ea464596221cc2136bd406532e551e024858401306ce220d74f33dc67a25 (from https://pypi.org/simple/sequana/), version: 0.0.2 2020-11-24T11:07:09,156 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz#sha256=a35665981a7dc3bc0f4c616771deff660f200b68ddcf7111ddbf50954783ada6 (from https://pypi.org/simple/sequana/), version: 0.0.3 2020-11-24T11:07:09,157 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz#sha256=003f89e7a3661f85300aa7469bd103e513f183b2d31c38658ee20d413a26b6e6 (from https://pypi.org/simple/sequana/), version: 0.1.0 2020-11-24T11:07:09,158 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz#sha256=14170dd319f68d60f106596506e5ddb77e52fe14ce7a5a41ae06172149f6effd (from https://pypi.org/simple/sequana/), version: 0.1.1 2020-11-24T11:07:09,159 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz#sha256=67a3165a43783d919587a50086c9809b142332e7ffe32c32956dfccf3f6ce759 (from https://pypi.org/simple/sequana/), version: 0.1.2 2020-11-24T11:07:09,160 Found link 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https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz#sha256=243f97f14e55e1a63066387a40210f6fae69ace1867d37c944b5c2adca02aa56 (from https://pypi.org/simple/sequana/), version: 0.1.13 2020-11-24T11:07:09,169 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz#sha256=56de9f1ad75975640048dd487880d5806b4c4171be519afb114af7e1a1c2524c (from https://pypi.org/simple/sequana/), version: 0.1.14 2020-11-24T11:07:09,169 Found link https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz#sha256=367f01afbf53b9daa5fb3c2d1f0b572f47c1eb5e2499263c1d7d037e30d86a69 (from https://pypi.org/simple/sequana/), version: 0.1.15 2020-11-24T11:07:09,170 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz#sha256=c129726c5ba906898d2b64ae0e6c55e922cad57f9899527fb764aa4641d3d124 (from https://pypi.org/simple/sequana/), version: 0.1.16 2020-11-24T11:07:09,171 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz#sha256=c986cfd188b2b9926fa47a441b463b4992b721a1814fdf816f19fae28bfda3d8 (from https://pypi.org/simple/sequana/), version: 0.1.17.1 2020-11-24T11:07:09,172 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz#sha256=a46bca6bd4d4a615854901b845161866be8de61c63bb8fd8aa87332bd999e2e6 (from https://pypi.org/simple/sequana/), version: 0.1.18 2020-11-24T11:07:09,173 Found link https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz#sha256=675770bba7d1a1164c11c1f2a9a8dc72c93130c7485a051dbcf00dc702f77936 (from https://pypi.org/simple/sequana/), version: 0.1.19 2020-11-24T11:07:09,174 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz#sha256=36ee03b785cf4fb00ceeb078aceb385f40322a81021ac46b0c16ce0d8dc1d51f (from https://pypi.org/simple/sequana/), version: 0.1.20 2020-11-24T11:07:09,175 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz#sha256=6ffb487609d0db8acb213e53407c3c1045158db0d9d253985ddae334183aea0f (from https://pypi.org/simple/sequana/), version: 0.1.21 2020-11-24T11:07:09,175 Found link 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https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz#sha256=6a1ce240bd11285e6033282e648509efdb6d6ed113242e8749275617a6d13f8a (from https://pypi.org/simple/sequana/), version: 0.6.0 2020-11-24T11:07:09,184 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz#sha256=5d55fbe016b5c11e4eb505d25706f579d50b0460dfb518d9770a3918e2cd1ba9 (from https://pypi.org/simple/sequana/), version: 0.6.1 2020-11-24T11:07:09,185 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz#sha256=d10d26f7dec1a0b58f7d383c07d110ff78e1d1b9848d12b6a8313b93730e4577 (from https://pypi.org/simple/sequana/), version: 0.6.2 2020-11-24T11:07:09,186 Found link 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https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz#sha256=bd00660d1cb8886dd79b9460742fb62d29f39a4174094bc0399694834b2612cc (from https://pypi.org/simple/sequana/), version: 0.8.1 2020-11-24T11:07:09,195 Found link https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz#sha256=11c51f29d0d696451896fc56e940e059d191b6f17616776e08eb5b1c5ac5dda5 (from https://pypi.org/simple/sequana/), version: 0.8.2 2020-11-24T11:07:09,196 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz#sha256=4c47176589613a57227e742b9f31144f6714dad53078708baa4a3d1ea3a16994 (from https://pypi.org/simple/sequana/), version: 0.8.3 2020-11-24T11:07:09,197 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz#sha256=a11baec596d779f399512d3fe853ecdd582a16691880c495509d34d8cc66e2e7 (from https://pypi.org/simple/sequana/), version: 0.8.4 2020-11-24T11:07:09,198 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz#sha256=a1c0b4f766b774380d74c90cc4af7b6c222a2d1630c0be4a906fff8d796ffe08 (from https://pypi.org/simple/sequana/), version: 0.8.5 2020-11-24T11:07:09,199 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz#sha256=fa651ddd8a29046d6e5aec081ad30b8b0469b8e81fb2a59cf4d8bb20c4fe5a2f (from https://pypi.org/simple/sequana/), version: 0.8.6 2020-11-24T11:07:09,200 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 (from https://pypi.org/simple/sequana/), version: 0.9.0 2020-11-24T11:07:09,200 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2020-11-24T11:07:09,201 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2020-11-24T11:07:09,202 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2020-11-24T11:07:09,203 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/sequana/ 2020-11-24T11:07:09,204 Getting page https://pypi.ngc.nvidia.com/sequana/ 2020-11-24T11:07:09,207 Found index url https://pypi.ngc.nvidia.com 2020-11-24T11:07:10,322 Could not fetch URL https://pypi.ngc.nvidia.com/sequana/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/sequana/ - skipping 2020-11-24T11:07:10,363 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2020-11-24T11:07:10,366 Using version 0.9.3 (newest of versions: 0.9.3) 2020-11-24T11:07:10,375 Collecting sequana==0.9.3 2020-11-24T11:07:10,380 Created temporary directory: /tmp/pip-unpack-brgqq19c 2020-11-24T11:07:11,232 Downloading sequana-0.9.3.tar.gz (21.0 MB) 2020-11-24T11:07:25,232 Added sequana==0.9.3 from https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c to build tracker '/tmp/pip-req-tracker-wzlgkr2b' 2020-11-24T11:07:25,235 Running setup.py (path:/tmp/pip-wheel-m9mlhvm9/sequana/setup.py) egg_info for package sequana 2020-11-24T11:07:25,237 Created temporary directory: /tmp/pip-pip-egg-info-o0ihu8yo 2020-11-24T11:07:25,237 Running command python setup.py egg_info 2020-11-24T11:07:27,851 running egg_info 2020-11-24T11:07:27,857 creating /tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info 2020-11-24T11:07:27,859 writing /tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/PKG-INFO 2020-11-24T11:07:27,868 writing requirements to /tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/requires.txt 2020-11-24T11:07:27,873 writing entry points to /tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/entry_points.txt 2020-11-24T11:07:27,876 writing dependency_links to /tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/dependency_links.txt 2020-11-24T11:07:27,878 writing top-level names to /tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/top_level.txt 2020-11-24T11:07:27,883 writing manifest file '/tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/SOURCES.txt' 2020-11-24T11:07:29,061 reading manifest file '/tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/SOURCES.txt' 2020-11-24T11:07:29,065 reading manifest template 'MANIFEST.in' 2020-11-24T11:07:29,072 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-11-24T11:07:29,077 warning: no previously-included files matching '*pyc' found under directory '*' 2020-11-24T11:07:29,942 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-11-24T11:07:29,945 warning: no previously-included files matching '*' found under directory 'test' 2020-11-24T11:07:29,949 warning: no previously-included files found matching 'sequana/rm2.py' 2020-11-24T11:07:30,007 writing manifest file '/tmp/pip-pip-egg-info-o0ihu8yo/sequana.egg-info/SOURCES.txt' 2020-11-24T11:07:30,147 Source in /tmp/pip-wheel-m9mlhvm9/sequana has version 0.9.3, which satisfies requirement sequana==0.9.3 from https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c 2020-11-24T11:07:30,149 Removed sequana==0.9.3 from https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c from build tracker '/tmp/pip-req-tracker-wzlgkr2b' 2020-11-24T11:07:30,154 Building wheels for collected packages: sequana 2020-11-24T11:07:30,163 Created temporary directory: /tmp/pip-wheel-at8l2f3x 2020-11-24T11:07:30,164 Building wheel for sequana (setup.py): started 2020-11-24T11:07:30,165 Destination directory: /tmp/pip-wheel-at8l2f3x 2020-11-24T11:07:30,165 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-m9mlhvm9/sequana/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-m9mlhvm9/sequana/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-at8l2f3x 2020-11-24T11:07:32,652 running bdist_wheel 2020-11-24T11:07:32,667 running build 2020-11-24T11:07:32,668 running build_py 2020-11-24T11:07:33,016 creating build 2020-11-24T11:07:33,017 creating build/lib 2020-11-24T11:07:33,018 creating build/lib/sequana 2020-11-24T11:07:33,022 copying sequana/summary.py -> build/lib/sequana 2020-11-24T11:07:33,027 copying sequana/vcftools.py -> build/lib/sequana 2020-11-24T11:07:33,032 copying sequana/stats.py -> build/lib/sequana 2020-11-24T11:07:33,036 copying sequana/coverage.py -> build/lib/sequana 2020-11-24T11:07:33,043 copying sequana/mixture.py -> build/lib/sequana 2020-11-24T11:07:33,050 copying sequana/errors.py -> build/lib/sequana 2020-11-24T11:07:33,055 copying sequana/busco.py -> build/lib/sequana 2020-11-24T11:07:33,061 copying sequana/rnadiff.py -> build/lib/sequana 2020-11-24T11:07:33,069 copying sequana/salmon.py -> build/lib/sequana 2020-11-24T11:07:33,074 copying sequana/pacbio.py -> build/lib/sequana 2020-11-24T11:07:33,083 copying sequana/iuapc.py -> build/lib/sequana 2020-11-24T11:07:33,090 copying sequana/itol.py -> build/lib/sequana 2020-11-24T11:07:33,096 copying sequana/snpeff.py -> build/lib/sequana 2020-11-24T11:07:33,102 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2020-11-24T11:07:33,108 copying sequana/gtf.py -> build/lib/sequana 2020-11-24T11:07:33,112 copying sequana/snaketools.py -> build/lib/sequana 2020-11-24T11:07:33,123 copying sequana/databases.py -> build/lib/sequana 2020-11-24T11:07:33,129 copying sequana/vcf_filter.py -> build/lib/sequana 2020-11-24T11:07:33,137 copying sequana/sequence.py -> build/lib/sequana 2020-11-24T11:07:33,146 copying sequana/contigs.py -> build/lib/sequana 2020-11-24T11:07:33,153 copying sequana/cpg_islands.py -> build/lib/sequana 2020-11-24T11:07:33,159 copying sequana/running_median.py -> build/lib/sequana 2020-11-24T11:07:33,164 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2020-11-24T11:07:33,170 copying sequana/assembly.py -> build/lib/sequana 2020-11-24T11:07:33,175 copying sequana/datatools.py -> build/lib/sequana 2020-11-24T11:07:33,180 copying sequana/bed.py -> build/lib/sequana 2020-11-24T11:07:33,186 copying sequana/pipelines_common.py -> build/lib/sequana 2020-11-24T11:07:33,195 copying sequana/mh.py -> build/lib/sequana 2020-11-24T11:07:33,202 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2020-11-24T11:07:33,207 copying sequana/iem.py -> build/lib/sequana 2020-11-24T11:07:33,213 copying sequana/mgi.py -> build/lib/sequana 2020-11-24T11:07:33,217 copying sequana/gff3.py -> build/lib/sequana 2020-11-24T11:07:33,223 copying sequana/cigar.py -> build/lib/sequana 2020-11-24T11:07:33,230 copying sequana/jsontool.py -> build/lib/sequana 2020-11-24T11:07:33,235 copying sequana/demultiplex.py -> build/lib/sequana 2020-11-24T11:07:33,242 copying sequana/genbank.py -> build/lib/sequana 2020-11-24T11:07:33,247 copying sequana/sniffer.py -> build/lib/sequana 2020-11-24T11:07:33,252 copying sequana/iotools.py -> build/lib/sequana 2020-11-24T11:07:33,256 copying sequana/misc.py -> build/lib/sequana 2020-11-24T11:07:33,261 copying sequana/fastqc.py -> build/lib/sequana 2020-11-24T11:07:33,267 copying sequana/krona.py -> build/lib/sequana 2020-11-24T11:07:33,273 copying sequana/annotations.py -> build/lib/sequana 2020-11-24T11:07:33,278 copying sequana/find_motif.py -> build/lib/sequana 2020-11-24T11:07:33,284 copying sequana/expdesign.py -> build/lib/sequana 2020-11-24T11:07:33,290 copying sequana/bedtools.py -> build/lib/sequana 2020-11-24T11:07:33,302 copying sequana/lazyimports.py -> build/lib/sequana 2020-11-24T11:07:33,309 copying sequana/fasta.py -> build/lib/sequana 2020-11-24T11:07:33,316 copying sequana/fastq.py -> build/lib/sequana 2020-11-24T11:07:33,325 copying sequana/vst.py -> build/lib/sequana 2020-11-24T11:07:33,330 copying sequana/kegg.py -> build/lib/sequana 2020-11-24T11:07:33,339 copying sequana/trf.py -> build/lib/sequana 2020-11-24T11:07:33,345 copying sequana/criteria.py -> build/lib/sequana 2020-11-24T11:07:33,352 copying sequana/compare.py -> build/lib/sequana 2020-11-24T11:07:33,359 copying sequana/__init__.py -> build/lib/sequana 2020-11-24T11:07:33,365 copying sequana/laa.py -> build/lib/sequana 2020-11-24T11:07:33,372 copying sequana/kraken.py -> build/lib/sequana 2020-11-24T11:07:33,384 copying sequana/kmer.py -> build/lib/sequana 2020-11-24T11:07:33,388 copying sequana/protein.py -> build/lib/sequana 2020-11-24T11:07:33,393 copying sequana/tools.py -> build/lib/sequana 2020-11-24T11:07:33,399 copying sequana/featurecounts.py -> build/lib/sequana 2020-11-24T11:07:33,404 copying sequana/phred.py -> build/lib/sequana 2020-11-24T11:07:33,409 copying sequana/bamtools.py -> build/lib/sequana 2020-11-24T11:07:33,419 copying sequana/enrichment.py -> build/lib/sequana 2020-11-24T11:07:33,430 copying sequana/isoseq.py -> build/lib/sequana 2020-11-24T11:07:33,439 copying sequana/canu_scanner.py -> build/lib/sequana 2020-11-24T11:07:33,445 copying sequana/cnv.py -> build/lib/sequana 2020-11-24T11:07:33,449 copying sequana/adapters.py -> build/lib/sequana 2020-11-24T11:07:33,457 copying sequana/taxonomy.py -> build/lib/sequana 2020-11-24T11:07:33,464 copying sequana/lazy.py -> build/lib/sequana 2020-11-24T11:07:33,469 copying sequana/kraken_builder.py -> build/lib/sequana 2020-11-24T11:07:33,482 creating build/lib/sequana/gui 2020-11-24T11:07:33,485 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2020-11-24T11:07:33,492 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2020-11-24T11:07:33,503 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2020-11-24T11:07:33,509 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2020-11-24T11:07:33,514 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2020-11-24T11:07:33,524 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2020-11-24T11:07:33,529 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2020-11-24T11:07:33,536 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2020-11-24T11:07:33,542 copying sequana/gui/help.py -> build/lib/sequana/gui 2020-11-24T11:07:33,547 copying sequana/gui/about.py -> build/lib/sequana/gui 2020-11-24T11:07:33,551 copying sequana/gui/messages.py -> build/lib/sequana/gui 2020-11-24T11:07:33,555 copying sequana/gui/browser.py -> build/lib/sequana/gui 2020-11-24T11:07:33,560 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2020-11-24T11:07:33,564 copying sequana/gui/tools.py -> build/lib/sequana/gui 2020-11-24T11:07:33,570 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2020-11-24T11:07:33,576 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2020-11-24T11:07:33,584 creating build/lib/sequana/plots 2020-11-24T11:07:33,586 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2020-11-24T11:07:33,592 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2020-11-24T11:07:33,595 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2020-11-24T11:07:33,603 creating build/lib/sequana/scripts 2020-11-24T11:07:33,605 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,613 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,618 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,624 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,629 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,637 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,644 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,651 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,657 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,662 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,668 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,673 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,678 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,684 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2020-11-24T11:07:33,694 creating build/lib/sequana/modules_report 2020-11-24T11:07:33,696 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,702 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,706 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,713 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,719 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,724 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,729 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,737 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,743 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,749 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,755 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,762 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,769 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,773 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,778 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,783 copying sequana/modules_report/enrichment.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,789 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,795 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2020-11-24T11:07:33,805 creating build/lib/sequana/multiqc 2020-11-24T11:07:33,807 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,814 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,819 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,824 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,828 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,832 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,839 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,846 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,851 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,857 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,864 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2020-11-24T11:07:33,873 creating build/lib/sequana/rules 2020-11-24T11:07:33,876 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2020-11-24T11:07:33,883 creating build/lib/sequana/utils 2020-11-24T11:07:33,886 copying sequana/utils/tree.py -> build/lib/sequana/utils 2020-11-24T11:07:33,893 copying sequana/utils/config.py -> build/lib/sequana/utils 2020-11-24T11:07:33,900 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2020-11-24T11:07:33,907 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2020-11-24T11:07:33,913 creating build/lib/sequana/pipelines 2020-11-24T11:07:33,915 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2020-11-24T11:07:33,921 creating build/lib/sequana/sphinxext 2020-11-24T11:07:33,923 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2020-11-24T11:07:33,927 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2020-11-24T11:07:33,932 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2020-11-24T11:07:33,939 creating build/lib/sequana/resources 2020-11-24T11:07:33,941 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2020-11-24T11:07:33,952 creating build/lib/sequana/viz 2020-11-24T11:07:33,955 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2020-11-24T11:07:33,961 copying sequana/viz/venn.py -> build/lib/sequana/viz 2020-11-24T11:07:33,965 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2020-11-24T11:07:33,971 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2020-11-24T11:07:33,979 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2020-11-24T11:07:33,986 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2020-11-24T11:07:33,994 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2020-11-24T11:07:34,001 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2020-11-24T11:07:34,007 copying sequana/viz/core.py -> build/lib/sequana/viz 2020-11-24T11:07:34,013 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2020-11-24T11:07:34,020 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2020-11-24T11:07:34,026 copying sequana/viz/pca.py -> build/lib/sequana/viz 2020-11-24T11:07:34,033 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2020-11-24T11:07:34,038 copying sequana/viz/anova.py -> build/lib/sequana/viz 2020-11-24T11:07:34,045 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2020-11-24T11:07:34,051 copying sequana/viz/mds.py -> build/lib/sequana/viz 2020-11-24T11:07:34,057 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2020-11-24T11:07:34,063 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2020-11-24T11:07:34,071 creating build/lib/sequana/rules/deeptools 2020-11-24T11:07:34,073 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2020-11-24T11:07:34,080 creating build/lib/sequana/rules/Utils 2020-11-24T11:07:34,083 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2020-11-24T11:07:34,090 creating build/lib/sequana/rules/picard-tools 2020-11-24T11:07:34,092 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2020-11-24T11:07:34,099 creating build/lib/sequana/rules/Assembly 2020-11-24T11:07:34,101 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2020-11-24T11:07:34,105 creating build/lib/sequana/rules/Adapters 2020-11-24T11:07:34,107 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2020-11-24T11:07:34,112 creating build/lib/sequana/rules/codecs 2020-11-24T11:07:34,114 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2020-11-24T11:07:34,119 creating build/lib/sequana/rules/idr 2020-11-24T11:07:34,122 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2020-11-24T11:07:34,129 creating build/lib/sequana/rules/Pacbio 2020-11-24T11:07:34,131 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2020-11-24T11:07:34,138 creating build/lib/sequana/rules/SnpEff 2020-11-24T11:07:34,140 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2020-11-24T11:07:34,145 creating build/lib/sequana/rules/Taxonomy 2020-11-24T11:07:34,147 copying sequana/rules/Taxonomy/__init__.py -> build/lib/sequana/rules/Taxonomy 2020-11-24T11:07:34,152 creating build/lib/sequana/rules/sambamba 2020-11-24T11:07:34,154 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2020-11-24T11:07:34,159 creating build/lib/sequana/rules/Variant_caller 2020-11-24T11:07:34,161 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2020-11-24T11:07:34,168 creating build/lib/sequana/resources/templates 2020-11-24T11:07:34,170 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2020-11-24T11:07:34,176 creating build/lib/sequana/resources/images 2020-11-24T11:07:34,179 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2020-11-24T11:07:34,184 creating build/lib/sequana/resources/testing 2020-11-24T11:07:34,186 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2020-11-24T11:07:34,191 creating build/lib/sequana/resources/snpeff 2020-11-24T11:07:34,192 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2020-11-24T11:07:34,197 creating build/lib/sequana/resources/js 2020-11-24T11:07:34,199 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2020-11-24T11:07:34,206 creating build/lib/sequana/resources/data 2020-11-24T11:07:34,208 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2020-11-24T11:07:34,215 creating build/lib/sequana/resources/css 2020-11-24T11:07:34,218 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2020-11-24T11:07:34,223 creating build/lib/sequana/resources/canvas 2020-11-24T11:07:34,225 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2020-11-24T11:07:34,228 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2020-11-24T11:07:34,233 creating build/lib/sequana/resources/busco 2020-11-24T11:07:34,235 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2020-11-24T11:07:34,240 creating build/lib/sequana/resources/testing/rnadiff 2020-11-24T11:07:34,242 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2020-11-24T11:07:34,249 creating build/lib/sequana/resources/data/adapters 2020-11-24T11:07:34,251 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:34,908 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2020-11-24T11:07:34,913 copying sequana/rules/README.rst -> build/lib/sequana/rules 2020-11-24T11:07:34,918 creating build/lib/sequana/rules/salmon_index 2020-11-24T11:07:34,920 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2020-11-24T11:07:34,925 creating build/lib/sequana/rules/multiqc2 2020-11-24T11:07:34,927 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2020-11-24T11:07:34,933 creating build/lib/sequana/rules/bam_quality_filter 2020-11-24T11:07:34,936 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2020-11-24T11:07:34,942 creating build/lib/sequana/rules/fastqc_dynamic 2020-11-24T11:07:34,945 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2020-11-24T11:07:34,952 creating build/lib/sequana/rules/bwa_mem_dynamic 2020-11-24T11:07:34,954 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2020-11-24T11:07:34,962 creating build/lib/sequana/rules/chipuanar 2020-11-24T11:07:34,964 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2020-11-24T11:07:34,971 creating build/lib/sequana/rules/bowtie1_index_dynamic 2020-11-24T11:07:34,974 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2020-11-24T11:07:34,980 creating build/lib/sequana/rules/samtools_sort 2020-11-24T11:07:34,983 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2020-11-24T11:07:34,990 creating build/lib/sequana/rules/bwa_index 2020-11-24T11:07:34,991 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2020-11-24T11:07:34,996 creating build/lib/sequana/rules/bowtie2_index_dynamic 2020-11-24T11:07:34,998 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2020-11-24T11:07:35,004 creating build/lib/sequana/rules/fastq_stats_dynamic 2020-11-24T11:07:35,005 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2020-11-24T11:07:35,011 creating build/lib/sequana/rules/copy_multiple_files 2020-11-24T11:07:35,013 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2020-11-24T11:07:35,020 creating build/lib/sequana/rules/feature_counts 2020-11-24T11:07:35,023 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2020-11-24T11:07:35,030 creating build/lib/sequana/rules/rulegraph 2020-11-24T11:07:35,032 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2020-11-24T11:07:35,037 creating build/lib/sequana/rules/quast 2020-11-24T11:07:35,039 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2020-11-24T11:07:35,044 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-11-24T11:07:35,046 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-11-24T11:07:35,052 creating build/lib/sequana/rules/indel_realigner 2020-11-24T11:07:35,055 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2020-11-24T11:07:35,062 creating build/lib/sequana/rules/multiqc 2020-11-24T11:07:35,065 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2020-11-24T11:07:35,072 creating build/lib/sequana/rules/bwa_bam_to_fastq 2020-11-24T11:07:35,074 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2020-11-24T11:07:35,082 creating build/lib/sequana/rules/bed_to_gff 2020-11-24T11:07:35,084 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2020-11-24T11:07:35,091 creating build/lib/sequana/rules/digital_normalisation 2020-11-24T11:07:35,094 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2020-11-24T11:07:35,101 creating build/lib/sequana/rules/star_mapping 2020-11-24T11:07:35,104 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2020-11-24T11:07:35,111 creating build/lib/sequana/rules/feature_counts_dynamic 2020-11-24T11:07:35,114 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2020-11-24T11:07:35,121 creating build/lib/sequana/rules/bam_analysis 2020-11-24T11:07:35,123 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2020-11-24T11:07:35,130 creating build/lib/sequana/rules/prokka 2020-11-24T11:07:35,133 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2020-11-24T11:07:35,140 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-11-24T11:07:35,143 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-11-24T11:07:35,150 creating build/lib/sequana/rules/igvtools 2020-11-24T11:07:35,153 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2020-11-24T11:07:35,160 creating build/lib/sequana/rules/mapping_analysis 2020-11-24T11:07:35,162 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2020-11-24T11:07:35,169 creating build/lib/sequana/rules/remove_blacklist 2020-11-24T11:07:35,172 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2020-11-24T11:07:35,179 creating build/lib/sequana/rules/extract_fasta_from_bed 2020-11-24T11:07:35,181 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2020-11-24T11:07:35,188 creating build/lib/sequana/rules/DupRadar 2020-11-24T11:07:35,191 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2020-11-24T11:07:35,197 creating build/lib/sequana/rules/samtools_depth 2020-11-24T11:07:35,200 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2020-11-24T11:07:35,207 creating build/lib/sequana/rules/summary_pipeline 2020-11-24T11:07:35,209 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2020-11-24T11:07:35,216 creating build/lib/sequana/rules/rnaseqc 2020-11-24T11:07:35,219 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2020-11-24T11:07:35,226 creating build/lib/sequana/rules/fastq_sampling 2020-11-24T11:07:35,228 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2020-11-24T11:07:35,235 creating build/lib/sequana/rules/spp 2020-11-24T11:07:35,237 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2020-11-24T11:07:35,242 creating build/lib/sequana/rules/format_contigs 2020-11-24T11:07:35,244 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2020-11-24T11:07:35,249 creating build/lib/sequana/rules/SARTools 2020-11-24T11:07:35,251 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2020-11-24T11:07:35,257 creating build/lib/sequana/rules/miRNA_count_dynamic 2020-11-24T11:07:35,260 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2020-11-24T11:07:35,267 creating build/lib/sequana/rules/revcomp_rule 2020-11-24T11:07:35,269 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2020-11-24T11:07:35,276 creating build/lib/sequana/rules/star_index 2020-11-24T11:07:35,278 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2020-11-24T11:07:35,285 creating build/lib/sequana/rules/dag 2020-11-24T11:07:35,288 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2020-11-24T11:07:35,294 creating build/lib/sequana/rules/sequana_coverage 2020-11-24T11:07:35,297 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2020-11-24T11:07:35,305 creating build/lib/sequana/rules/conda 2020-11-24T11:07:35,307 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2020-11-24T11:07:35,314 creating build/lib/sequana/rules/preSARTools 2020-11-24T11:07:35,316 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2020-11-24T11:07:35,323 creating build/lib/sequana/rules/spikes_counting 2020-11-24T11:07:35,326 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2020-11-24T11:07:35,333 creating build/lib/sequana/rules/salmon_mapping 2020-11-24T11:07:35,335 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2020-11-24T11:07:35,341 creating build/lib/sequana/rules/tophat_mapping 2020-11-24T11:07:35,343 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2020-11-24T11:07:35,348 creating build/lib/sequana/rules/deeptools/plotCoverage 2020-11-24T11:07:35,349 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2020-11-24T11:07:35,355 creating build/lib/sequana/rules/deeptools/bamCoverage 2020-11-24T11:07:35,357 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2020-11-24T11:07:35,364 creating build/lib/sequana/rules/deeptools/multiBamSummary 2020-11-24T11:07:35,366 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2020-11-24T11:07:35,373 creating build/lib/sequana/rules/deeptools/plotCorrelation 2020-11-24T11:07:35,375 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2020-11-24T11:07:35,381 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-11-24T11:07:35,383 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-11-24T11:07:35,388 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2020-11-24T11:07:35,390 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2020-11-24T11:07:35,395 creating build/lib/sequana/rules/Utils/dynamic_copy 2020-11-24T11:07:35,396 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2020-11-24T11:07:35,403 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-24T11:07:35,406 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-24T11:07:35,413 creating build/lib/sequana/rules/picard-tools/add_read_group 2020-11-24T11:07:35,415 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2020-11-24T11:07:35,422 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-24T11:07:35,425 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-24T11:07:35,432 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-24T11:07:35,435 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-24T11:07:35,442 creating build/lib/sequana/rules/picard-tools/reorderSam 2020-11-24T11:07:35,445 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2020-11-24T11:07:35,452 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-24T11:07:35,454 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-24T11:07:35,461 creating build/lib/sequana/rules/peak_calling 2020-11-24T11:07:35,463 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-11-24T11:07:35,466 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-11-24T11:07:35,473 creating build/lib/sequana/rules/Assembly/busco_analysis 2020-11-24T11:07:35,476 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2020-11-24T11:07:35,483 creating build/lib/sequana/rules/Assembly/busco 2020-11-24T11:07:35,485 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2020-11-24T11:07:35,493 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2020-11-24T11:07:35,496 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2020-11-24T11:07:35,503 creating build/lib/sequana/rules/Assembly/spades 2020-11-24T11:07:35,505 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2020-11-24T11:07:35,513 creating build/lib/sequana/rules/Assembly/canu 2020-11-24T11:07:35,515 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2020-11-24T11:07:35,523 creating build/lib/sequana/rules/multiqc/2.0 2020-11-24T11:07:35,526 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2020-11-24T11:07:35,533 creating build/lib/sequana/rules/Adapters/adapter_removal 2020-11-24T11:07:35,535 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2020-11-24T11:07:35,543 creating build/lib/sequana/rules/Adapters/alien_trimmer 2020-11-24T11:07:35,545 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2020-11-24T11:07:35,553 creating build/lib/sequana/rules/Adapters/cutadapt 2020-11-24T11:07:35,556 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2020-11-24T11:07:35,564 creating build/lib/sequana/rules/Adapters/identify_adapters 2020-11-24T11:07:35,567 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2020-11-24T11:07:35,574 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-11-24T11:07:35,576 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-11-24T11:07:35,584 creating build/lib/sequana/rules/codecs/bam_to_fasta 2020-11-24T11:07:35,586 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2020-11-24T11:07:35,593 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2020-11-24T11:07:35,596 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2020-11-24T11:07:35,603 creating build/lib/sequana/rules/codecs/gz_to_bz2 2020-11-24T11:07:35,605 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2020-11-24T11:07:35,613 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2020-11-24T11:07:35,615 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2020-11-24T11:07:35,623 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-11-24T11:07:35,625 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-11-24T11:07:35,632 creating build/lib/sequana/rules/codecs/gz_to_fastq 2020-11-24T11:07:35,635 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2020-11-24T11:07:35,642 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2020-11-24T11:07:35,645 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2020-11-24T11:07:35,652 creating build/lib/sequana/rules/codecs/fastq_to_gz 2020-11-24T11:07:35,654 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2020-11-24T11:07:35,661 creating build/lib/sequana/rules/codecs/bz2_to_gz 2020-11-24T11:07:35,664 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2020-11-24T11:07:35,671 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2020-11-24T11:07:35,674 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2020-11-24T11:07:35,681 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-11-24T11:07:35,684 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-11-24T11:07:35,691 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-11-24T11:07:35,694 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-11-24T11:07:35,701 creating build/lib/sequana/rules/idr/union_peaks 2020-11-24T11:07:35,704 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2020-11-24T11:07:35,711 creating build/lib/sequana/rules/idr/metrics_peaks 2020-11-24T11:07:35,713 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2020-11-24T11:07:35,721 creating build/lib/sequana/rules/idr/intersectionApproach 2020-11-24T11:07:35,723 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2020-11-24T11:07:35,731 creating build/lib/sequana/rules/idr/compute_idr 2020-11-24T11:07:35,733 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2020-11-24T11:07:35,740 creating build/lib/sequana/rules/idr/select_peaks 2020-11-24T11:07:35,743 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2020-11-24T11:07:35,750 creating build/lib/sequana/rules/idr/preIDR_dynamic 2020-11-24T11:07:35,753 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2020-11-24T11:07:35,761 creating build/lib/sequana/rules/idr/stats_peakCalling 2020-11-24T11:07:35,764 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2020-11-24T11:07:35,772 creating build/lib/sequana/rules/Pacbio/pacbio_quality 2020-11-24T11:07:35,774 copying sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/Pacbio/pacbio_quality 2020-11-24T11:07:35,782 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-11-24T11:07:35,784 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-11-24T11:07:35,792 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-11-24T11:07:35,794 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-11-24T11:07:35,801 creating build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-11-24T11:07:35,804 copying sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-11-24T11:07:35,812 creating build/lib/sequana/rules/Taxonomy/fastq_screen 2020-11-24T11:07:35,814 copying sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen 2020-11-24T11:07:35,821 creating build/lib/sequana/rules/sambamba/sambamba_filter 2020-11-24T11:07:35,824 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2020-11-24T11:07:35,831 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2020-11-24T11:07:35,834 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2020-11-24T11:07:35,841 creating build/lib/sequana/rules/Variant_caller/freebayes 2020-11-24T11:07:35,843 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2020-11-24T11:07:35,851 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-11-24T11:07:35,853 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-11-24T11:07:35,861 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-24T11:07:35,863 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-24T11:07:35,871 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-24T11:07:35,874 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-24T11:07:35,881 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-24T11:07:35,884 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-24T11:07:35,892 creating build/lib/sequana/rules/SnpEff/snpeff 2020-11-24T11:07:35,893 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-11-24T11:07:35,897 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-11-24T11:07:35,905 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-11-24T11:07:35,908 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-11-24T11:07:35,914 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-11-24T11:07:35,914 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-24T11:07:35,918 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-24T11:07:35,924 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-24T11:07:35,927 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-24T11:07:35,935 creating build/lib/sequana/rules/Taxonomy/kraken 2020-11-24T11:07:35,936 creating build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-11-24T11:07:35,940 copying sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-11-24T11:07:35,947 creating build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-11-24T11:07:35,949 copying sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-11-24T11:07:35,955 creating build/lib/sequana/pipelines/compressor 2020-11-24T11:07:35,957 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2020-11-24T11:07:35,963 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2020-11-24T11:07:35,971 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2020-11-24T11:07:35,978 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2020-11-24T11:07:35,987 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2020-11-24T11:07:35,993 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2020-11-24T11:07:35,998 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2020-11-24T11:07:36,004 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2020-11-24T11:07:36,011 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2020-11-24T11:07:36,019 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2020-11-24T11:07:36,026 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2020-11-24T11:07:36,032 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2020-11-24T11:07:36,038 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2020-11-24T11:07:36,044 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2020-11-24T11:07:36,057 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,064 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,070 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,076 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,084 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,090 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,098 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,105 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,111 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,124 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,130 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,138 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,147 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,155 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,161 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,166 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,182 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,195 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,234 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,241 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,246 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,255 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,266 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,282 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,289 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,311 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,319 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,389 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,395 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,403 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,413 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,421 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,429 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,441 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,447 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,460 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,467 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,474 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,494 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,502 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,509 copying sequana/resources/testing/test.fasta.fai -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,516 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,524 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,531 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,571 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,581 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,591 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,635 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,644 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,653 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,660 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,667 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,699 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,707 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,720 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,733 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,741 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,748 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,758 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,772 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,779 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,804 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,811 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,832 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,841 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,849 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,857 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,866 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,873 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,881 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,890 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,897 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,907 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,916 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,924 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,931 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,974 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,980 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,986 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:36,994 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,002 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,009 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,017 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,024 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,032 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,041 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,053 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,062 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,069 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,077 copying sequana/resources/testing/test_measles.bam.bai -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,084 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,092 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,108 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,115 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,135 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,142 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,149 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2020-11-24T11:07:37,157 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2020-11-24T11:07:37,167 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,177 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,193 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,209 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,219 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,235 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,243 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,259 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,272 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,305 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,314 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,321 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,351 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2020-11-24T11:07:37,361 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2020-11-24T11:07:37,368 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2020-11-24T11:07:37,377 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2020-11-24T11:07:37,392 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2020-11-24T11:07:37,402 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2020-11-24T11:07:37,415 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2020-11-24T11:07:37,446 copying sequana/resources/data/phiX174.fa.pac -> build/lib/sequana/resources/data 2020-11-24T11:07:37,454 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2020-11-24T11:07:37,464 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2020-11-24T11:07:37,473 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-24T11:07:37,492 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2020-11-24T11:07:37,528 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2020-11-24T11:07:37,535 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-24T11:07:37,976 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2020-11-24T11:07:37,986 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2020-11-24T11:07:38,041 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-24T11:07:38,061 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-24T11:07:38,503 copying sequana/resources/data/phiX174.fa.amb -> build/lib/sequana/resources/data 2020-11-24T11:07:38,509 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2020-11-24T11:07:38,519 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2020-11-24T11:07:38,531 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2020-11-24T11:07:38,537 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2020-11-24T11:07:38,543 copying sequana/resources/data/phiX174.fa.bwt -> build/lib/sequana/resources/data 2020-11-24T11:07:38,549 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2020-11-24T11:07:38,559 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2020-11-24T11:07:38,646 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2020-11-24T11:07:38,654 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2020-11-24T11:07:38,661 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2020-11-24T11:07:38,668 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2020-11-24T11:07:38,679 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2020-11-24T11:07:38,733 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-24T11:07:38,750 copying sequana/resources/data/phiX174.fa.ann -> build/lib/sequana/resources/data 2020-11-24T11:07:38,757 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2020-11-24T11:07:38,766 copying sequana/resources/data/measles.fa.fai -> build/lib/sequana/resources/data 2020-11-24T11:07:38,773 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2020-11-24T11:07:38,820 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-24T11:07:38,838 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2020-11-24T11:07:38,843 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2020-11-24T11:07:38,849 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2020-11-24T11:07:38,857 copying sequana/resources/data/phiX174.fa.sa -> build/lib/sequana/resources/data 2020-11-24T11:07:38,864 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2020-11-24T11:07:38,871 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2020-11-24T11:07:38,878 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2020-11-24T11:07:38,884 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2020-11-24T11:07:38,891 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2020-11-24T11:07:38,909 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2020-11-24T11:07:38,918 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-11-24T11:07:38,919 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-24T11:07:38,923 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-24T11:07:40,592 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-24T11:07:41,154 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-11-24T11:07:41,155 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-24T11:07:41,159 copying sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-24T11:07:41,240 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-11-24T11:07:41,241 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-24T11:07:41,244 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-24T11:07:41,252 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-24T11:07:41,262 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-11-24T11:07:41,263 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-24T11:07:41,267 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-24T11:07:41,369 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,378 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,386 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,394 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,403 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,411 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,418 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,427 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,434 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,443 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,450 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,457 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,465 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,473 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,481 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,489 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,497 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,505 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,513 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,521 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,529 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,537 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,544 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,552 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,560 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,568 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,577 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,584 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,591 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,600 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,607 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-24T11:07:41,683 installing to build/bdist.linux-armv7l/wheel 2020-11-24T11:07:41,684 running install 2020-11-24T11:07:41,686 running install_lib 2020-11-24T11:07:41,694 creating build/bdist.linux-armv7l 2020-11-24T11:07:41,695 creating build/bdist.linux-armv7l/wheel 2020-11-24T11:07:41,702 creating build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,704 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,711 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,717 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,722 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,729 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,737 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,742 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,749 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,761 creating build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,764 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,772 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,785 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,792 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,799 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,811 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,816 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,823 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,830 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,835 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,841 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,847 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,854 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,859 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,865 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,872 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-24T11:07:41,878 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,883 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,894 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,901 creating build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-24T11:07:41,904 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-24T11:07:41,911 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-24T11:07:41,916 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-24T11:07:41,922 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:41,930 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,933 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,941 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,948 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,955 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,961 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,968 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,975 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,982 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,989 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:41,995 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:42,002 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:42,007 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:42,012 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:42,018 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-24T11:07:42,025 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,034 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,037 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,044 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,050 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,057 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,063 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,069 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,074 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,081 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,087 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,093 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,098 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,105 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,112 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,116 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,122 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,129 copying build/lib/sequana/modules_report/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,136 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,143 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-24T11:07:42,149 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,156 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,162 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,175 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,182 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,189 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,199 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,205 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,211 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,217 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,224 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,231 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,236 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,243 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,254 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,256 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,264 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,270 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,277 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,283 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,289 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,295 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,302 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,308 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,314 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,320 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,327 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-24T11:07:42,334 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,340 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,347 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,354 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,361 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,369 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,376 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,383 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,389 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,395 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,401 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,408 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,416 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,423 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,429 copying build/lib/sequana/annotations.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:42,438 creating build/bdist.linux-armv7l/wheel/sequana/rules 2020-11-24T11:07:42,442 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-11-24T11:07:42,446 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-11-24T11:07:42,454 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-11-24T11:07:42,457 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-11-24T11:07:42,465 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-11-24T11:07:42,468 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-11-24T11:07:42,475 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-11-24T11:07:42,478 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-11-24T11:07:42,486 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-11-24T11:07:42,489 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-11-24T11:07:42,497 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-11-24T11:07:42,500 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-11-24T11:07:42,508 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-11-24T11:07:42,512 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-11-24T11:07:42,515 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-11-24T11:07:42,523 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-11-24T11:07:42,526 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-11-24T11:07:42,534 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-11-24T11:07:42,536 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-11-24T11:07:42,544 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-11-24T11:07:42,547 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-11-24T11:07:42,553 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-11-24T11:07:42,560 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-11-24T11:07:42,562 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-11-24T11:07:42,570 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-11-24T11:07:42,573 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-11-24T11:07:42,581 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-11-24T11:07:42,583 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-11-24T11:07:42,591 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-11-24T11:07:42,594 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-11-24T11:07:42,601 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-11-24T11:07:42,604 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-11-24T11:07:42,612 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-11-24T11:07:42,615 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-11-24T11:07:42,623 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-11-24T11:07:42,627 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-11-24T11:07:42,630 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-11-24T11:07:42,638 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-11-24T11:07:42,641 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-11-24T11:07:42,647 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-11-24T11:07:42,654 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-24T11:07:42,656 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-24T11:07:42,664 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-11-24T11:07:42,667 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-11-24T11:07:42,675 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-11-24T11:07:42,677 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-11-24T11:07:42,685 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-11-24T11:07:42,690 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-11-24T11:07:42,693 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-11-24T11:07:42,700 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-24T11:07:42,703 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-24T11:07:42,711 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-24T11:07:42,713 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-24T11:07:42,722 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-11-24T11:07:42,724 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-11-24T11:07:42,732 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-24T11:07:42,756 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-24T11:07:42,763 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-11-24T11:07:42,769 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2020-11-24T11:07:42,773 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-11-24T11:07:42,777 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-11-24T11:07:42,785 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-11-24T11:07:42,788 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-11-24T11:07:42,797 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-11-24T11:07:42,801 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-11-24T11:07:42,810 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-11-24T11:07:42,814 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-11-24T11:07:42,822 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-11-24T11:07:42,826 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-11-24T11:07:42,829 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-11-24T11:07:42,835 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-11-24T11:07:42,837 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-11-24T11:07:42,845 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-11-24T11:07:42,848 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-11-24T11:07:42,856 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-11-24T11:07:42,859 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-11-24T11:07:42,865 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-11-24T11:07:42,872 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-11-24T11:07:42,875 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-11-24T11:07:42,882 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-11-24T11:07:42,885 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-11-24T11:07:42,893 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-11-24T11:07:42,897 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-11-24T11:07:42,901 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-11-24T11:07:42,907 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-11-24T11:07:42,914 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-11-24T11:07:42,917 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-11-24T11:07:42,925 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-11-24T11:07:42,928 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-11-24T11:07:42,936 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-11-24T11:07:42,938 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-11-24T11:07:42,946 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-11-24T11:07:42,949 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-11-24T11:07:42,958 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-11-24T11:07:42,961 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-11-24T11:07:42,968 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-11-24T11:07:42,971 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-11-24T11:07:42,977 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-11-24T11:07:42,981 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-11-24T11:07:42,984 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-11-24T11:07:42,990 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-11-24T11:07:42,993 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-11-24T11:07:43,000 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-11-24T11:07:43,004 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-11-24T11:07:43,012 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-11-24T11:07:43,020 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-11-24T11:07:43,024 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-11-24T11:07:43,031 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-11-24T11:07:43,034 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-11-24T11:07:43,041 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-11-24T11:07:43,044 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-11-24T11:07:43,053 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-11-24T11:07:43,057 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-11-24T11:07:43,066 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-11-24T11:07:43,069 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-11-24T11:07:43,076 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-11-24T11:07:43,080 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-11-24T11:07:43,083 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-11-24T11:07:43,092 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-11-24T11:07:43,096 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-11-24T11:07:43,105 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-11-24T11:07:43,109 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-11-24T11:07:43,115 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-11-24T11:07:43,118 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-11-24T11:07:43,125 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-11-24T11:07:43,128 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-11-24T11:07:43,138 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-11-24T11:07:43,142 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-11-24T11:07:43,150 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-11-24T11:07:43,153 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-11-24T11:07:43,160 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-11-24T11:07:43,162 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-11-24T11:07:43,170 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-11-24T11:07:43,174 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-11-24T11:07:43,181 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-11-24T11:07:43,189 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-11-24T11:07:43,193 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-11-24T11:07:43,199 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-11-24T11:07:43,202 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-11-24T11:07:43,209 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-11-24T11:07:43,212 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-11-24T11:07:43,221 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-11-24T11:07:43,225 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-11-24T11:07:43,234 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-11-24T11:07:43,237 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-11-24T11:07:43,243 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-11-24T11:07:43,247 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-11-24T11:07:43,250 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-11-24T11:07:43,257 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-11-24T11:07:43,260 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-11-24T11:07:43,267 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-11-24T11:07:43,270 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-11-24T11:07:43,278 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-11-24T11:07:43,281 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-11-24T11:07:43,290 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-11-24T11:07:43,294 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-11-24T11:07:43,300 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-11-24T11:07:43,305 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-11-24T11:07:43,313 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-11-24T11:07:43,317 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-11-24T11:07:43,324 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-11-24T11:07:43,332 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-11-24T11:07:43,335 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-11-24T11:07:43,342 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-11-24T11:07:43,345 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-11-24T11:07:43,351 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-11-24T11:07:43,354 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-11-24T11:07:43,360 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-11-24T11:07:43,363 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-11-24T11:07:43,370 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-11-24T11:07:43,372 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-11-24T11:07:43,379 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-11-24T11:07:43,382 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-11-24T11:07:43,388 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-11-24T11:07:43,391 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-11-24T11:07:43,399 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-11-24T11:07:43,403 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-11-24T11:07:43,412 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-11-24T11:07:43,416 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-11-24T11:07:43,423 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-11-24T11:07:43,426 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-11-24T11:07:43,433 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-11-24T11:07:43,436 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-11-24T11:07:43,441 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-11-24T11:07:43,446 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-11-24T11:07:43,449 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-11-24T11:07:43,455 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-11-24T11:07:43,460 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2020-11-24T11:07:43,465 copying build/lib/sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2020-11-24T11:07:43,473 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-11-24T11:07:43,479 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-11-24T11:07:43,483 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-11-24T11:07:43,486 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-11-24T11:07:43,493 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2020-11-24T11:07:43,497 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-11-24T11:07:43,502 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-11-24T11:07:43,511 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-11-24T11:07:43,515 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-11-24T11:07:43,523 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-11-24T11:07:43,525 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-11-24T11:07:43,532 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-11-24T11:07:43,536 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-24T11:07:43,539 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-24T11:07:43,546 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-24T11:07:43,548 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-24T11:07:43,554 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-11-24T11:07:43,561 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-11-24T11:07:43,566 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-11-24T11:07:43,570 copying build/lib/sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-11-24T11:07:43,578 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken 2020-11-24T11:07:43,582 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-11-24T11:07:43,585 copying build/lib/sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-11-24T11:07:43,593 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-11-24T11:07:43,596 copying build/lib/sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-11-24T11:07:43,602 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-11-24T11:07:43,604 copying build/lib/sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-11-24T11:07:43,608 copying build/lib/sequana/rules/Taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-11-24T11:07:43,613 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-11-24T11:07:43,615 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-11-24T11:07:43,622 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-11-24T11:07:43,626 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-11-24T11:07:43,629 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-11-24T11:07:43,636 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-11-24T11:07:43,639 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-11-24T11:07:43,645 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-11-24T11:07:43,649 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-11-24T11:07:43,656 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-11-24T11:07:43,659 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-11-24T11:07:43,667 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-11-24T11:07:43,670 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-11-24T11:07:43,678 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-11-24T11:07:43,680 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-11-24T11:07:43,688 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-11-24T11:07:43,692 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-11-24T11:07:43,696 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-11-24T11:07:43,704 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-11-24T11:07:43,706 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-11-24T11:07:43,714 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-24T11:07:43,717 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-24T11:07:43,724 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-11-24T11:07:43,730 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-24T11:07:43,733 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-24T11:07:43,740 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-24T11:07:43,743 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-24T11:07:43,751 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-11-24T11:07:43,754 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-11-24T11:07:43,761 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-11-24T11:07:43,764 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-11-24T11:07:43,772 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-11-24T11:07:43,775 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-11-24T11:07:43,781 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,786 copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,792 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,806 creating build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-24T11:07:43,809 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-24T11:07:43,816 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-24T11:07:43,822 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-24T11:07:43,829 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-24T11:07:43,834 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,841 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,848 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,858 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,864 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,876 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,883 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,891 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-11-24T11:07:43,895 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,898 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,904 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,910 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,917 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,925 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,931 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,936 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-24T11:07:43,942 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-11-24T11:07:43,948 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-24T11:07:43,950 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-24T11:07:43,953 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-24T11:07:43,958 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-24T11:07:43,963 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,970 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,975 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,982 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:43,995 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:44,002 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:44,008 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:44,017 creating build/bdist.linux-armv7l/wheel/sequana/resources 2020-11-24T11:07:44,021 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-24T11:07:44,024 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-24T11:07:44,031 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-24T11:07:44,039 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-24T11:07:44,046 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-24T11:07:44,051 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-24T11:07:44,056 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-24T11:07:44,058 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-24T11:07:44,063 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-24T11:07:44,069 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-24T11:07:44,079 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-24T11:07:44,091 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,094 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,108 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,114 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,120 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,127 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,136 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,142 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,147 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,162 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,175 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,217 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,224 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,230 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,238 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,247 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,253 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,268 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,273 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,293 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,298 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,365 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,371 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,376 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,382 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,389 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,397 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,404 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,410 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,421 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,426 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,437 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,441 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,445 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,461 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,465 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,471 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,477 copying build/lib/sequana/resources/testing/test.fasta.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,483 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,489 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,494 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,531 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,538 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:44,547 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-11-24T11:07:44,551 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-11-24T11:07:44,555 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-24T11:07:44,557 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-24T11:07:46,210 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-24T11:07:46,771 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-11-24T11:07:46,774 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-24T11:07:46,777 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-24T11:07:46,856 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-11-24T11:07:46,860 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-24T11:07:46,863 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-24T11:07:46,873 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-24T11:07:46,881 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-11-24T11:07:46,888 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-11-24T11:07:46,892 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-24T11:07:46,895 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-24T11:07:46,995 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,038 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,044 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,052 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,059 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,066 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,072 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,104 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,112 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,124 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,139 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,146 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,151 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,161 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,176 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,183 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,191 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,215 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,221 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,239 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,244 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,248 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,253 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,259 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,265 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,271 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,276 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,281 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,286 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,294 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,300 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,305 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,309 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,314 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,355 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,361 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,366 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,373 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,378 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,381 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,385 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,389 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,395 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,401 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,407 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,417 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,425 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,431 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,438 copying build/lib/sequana/resources/testing/test_measles.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,443 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,449 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,462 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,466 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,483 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,488 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,493 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-24T11:07:47,502 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-11-24T11:07:47,504 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-11-24T11:07:47,512 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-11-24T11:07:47,519 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,522 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,530 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,543 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,556 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,563 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,578 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,584 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,599 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,608 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,613 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,642 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,647 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,653 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,681 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-24T11:07:47,691 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,694 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,704 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,731 copying build/lib/sequana/resources/data/phiX174.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,735 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,740 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,747 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,764 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,799 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:47,803 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,258 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,267 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,320 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,338 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,806 copying build/lib/sequana/resources/data/phiX174.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,811 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,820 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,831 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,837 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,843 copying build/lib/sequana/resources/data/phiX174.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,849 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,856 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,863 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,877 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,964 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,970 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,976 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,981 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:48,991 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,045 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,050 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,068 copying build/lib/sequana/resources/data/phiX174.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,074 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,082 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,090 copying build/lib/sequana/resources/data/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,095 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,138 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,156 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,161 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,167 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,173 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,184 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,187 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,195 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,202 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,209 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,216 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,224 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,231 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,239 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,247 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,252 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,258 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,264 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,271 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,280 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,286 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,292 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,296 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,301 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,307 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,313 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,319 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,325 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,331 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,338 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,344 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,349 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,356 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,362 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,368 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,375 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,382 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,388 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-24T11:07:49,394 copying build/lib/sequana/resources/data/phiX174.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-24T11:07:49,402 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-24T11:07:49,404 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-24T11:07:49,411 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-24T11:07:49,418 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-24T11:07:49,425 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-24T11:07:49,432 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-24T11:07:49,450 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-24T11:07:49,457 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-11-24T11:07:49,459 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-11-24T11:07:49,465 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-11-24T11:07:49,472 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-11-24T11:07:49,475 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-11-24T11:07:49,481 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-11-24T11:07:49,486 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2020-11-24T11:07:49,492 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,499 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,506 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,519 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,531 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,540 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,548 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,554 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,564 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,572 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,580 creating build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,582 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,589 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,595 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,602 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,610 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,617 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,625 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,632 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,637 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,643 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,650 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,656 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,663 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,669 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,675 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,681 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,687 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,693 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-24T11:07:49,699 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-24T11:07:49,708 running install_egg_info 2020-11-24T11:07:49,763 running egg_info 2020-11-24T11:07:49,764 writing top-level names to sequana.egg-info/top_level.txt 2020-11-24T11:07:49,767 writing dependency_links to sequana.egg-info/dependency_links.txt 2020-11-24T11:07:49,770 writing requirements to sequana.egg-info/requires.txt 2020-11-24T11:07:49,774 writing entry points to sequana.egg-info/entry_points.txt 2020-11-24T11:07:49,777 writing sequana.egg-info/PKG-INFO 2020-11-24T11:07:50,084 reading manifest file 'sequana.egg-info/SOURCES.txt' 2020-11-24T11:07:50,119 reading manifest template 'MANIFEST.in' 2020-11-24T11:07:50,129 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-11-24T11:07:50,137 warning: no previously-included files matching '*pyc' found under directory '*' 2020-11-24T11:07:52,822 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-11-24T11:07:52,828 warning: no previously-included files matching '*' found under directory 'test' 2020-11-24T11:07:52,834 warning: no previously-included files found matching 'sequana/rm2.py' 2020-11-24T11:07:52,927 writing manifest file 'sequana.egg-info/SOURCES.txt' 2020-11-24T11:07:52,933 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.9.3-py3.5.egg-info 2020-11-24T11:07:52,975 running install_scripts 2020-11-24T11:07:53,295 creating build/bdist.linux-armv7l/wheel/sequana-0.9.3.dist-info/WHEEL 2020-11-24T11:08:11,436 Building wheel for sequana (setup.py): finished with status 'done' 2020-11-24T11:08:11,794 Created wheel for sequana: filename=sequana-0.9.3-py3-none-any.whl size=21335730 sha256=0374fc2b8f2f54ea8e3a5091403798b1bae59166b89fd7cf6eb846f7a3d944b3 2020-11-24T11:08:11,795 Stored in directory: /tmp/pip-ephem-wheel-cache-mcrfwwtq/wheels/24/fe/1b/98ae3596eb512f2ae02418968b84f3facc49ad9a7c4bdae96e 2020-11-24T11:08:11,800 Successfully built sequana 2020-11-24T11:08:15,510 Removed build tracker: '/tmp/pip-req-tracker-wzlgkr2b'