2020-11-25T20:52:51,011 Created temporary directory: /tmp/pip-ephem-wheel-cache-2z82ss4a 2020-11-25T20:52:51,014 Created temporary directory: /tmp/pip-req-tracker-a44abybs 2020-11-25T20:52:51,015 Initialized build tracking at /tmp/pip-req-tracker-a44abybs 2020-11-25T20:52:51,015 Created build tracker: /tmp/pip-req-tracker-a44abybs 2020-11-25T20:52:51,015 Entered build tracker: /tmp/pip-req-tracker-a44abybs 2020-11-25T20:52:51,016 Created temporary directory: /tmp/pip-wheel-dtxyec78 2020-11-25T20:52:51,025 1 location(s) to search for versions of jcvi: 2020-11-25T20:52:51,025 * https://pypi.org/simple/jcvi/ 2020-11-25T20:52:51,026 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2020-11-25T20:52:51,026 Getting page https://pypi.org/simple/jcvi/ 2020-11-25T20:52:51,028 Found index url https://pypi.org/simple 2020-11-25T20:52:51,141 Found link 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https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6 2020-11-25T20:52:51,145 Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7 2020-11-25T20:52:51,145 Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8 2020-11-25T20:52:51,146 Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9 2020-11-25T20:52:51,146 Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1 2020-11-25T20:52:51,146 Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2 2020-11-25T20:52:51,146 Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6 2020-11-25T20:52:51,147 Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9 2020-11-25T20:52:51,147 Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1 2020-11-25T20:52:51,147 Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3 2020-11-25T20:52:51,148 Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4 2020-11-25T20:52:51,148 Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5 2020-11-25T20:52:51,148 Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6 2020-11-25T20:52:51,149 Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7 2020-11-25T20:52:51,149 Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4 2020-11-25T20:52:51,149 Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12 2020-11-25T20:52:51,149 Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6 2020-11-25T20:52:51,150 Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9 2020-11-25T20:52:51,150 Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10 2020-11-25T20:52:51,150 Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11 2020-11-25T20:52:51,151 Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12 2020-11-25T20:52:51,151 Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13 2020-11-25T20:52:51,151 Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14 2020-11-25T20:52:51,152 Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1 2020-11-25T20:52:51,152 Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2020-11-25T20:52:51,152 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2020-11-25T20:52:51,152 Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4 2020-11-25T20:52:51,153 Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2020-11-25T20:52:51,153 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2020-11-25T20:52:51,153 Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7 2020-11-25T20:52:51,153 Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8 2020-11-25T20:52:51,154 Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9 2020-11-25T20:52:51,154 Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10 2020-11-25T20:52:51,154 Found link https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 (from https://pypi.org/simple/jcvi/), version: 1.0.11 2020-11-25T20:52:51,155 Found link https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd (from https://pypi.org/simple/jcvi/), version: 1.0.12 2020-11-25T20:52:51,165 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2020-11-25T20:52:51,166 Using version 1.0.12 (newest of versions: 1.0.12) 2020-11-25T20:52:51,170 Collecting jcvi==1.0.12 2020-11-25T20:52:51,172 Created temporary directory: /tmp/pip-unpack-4iz6wfnj 2020-11-25T20:52:51,216 Downloading jcvi-1.0.12.tar.gz (842 kB) 2020-11-25T20:52:52,034 Added jcvi==1.0.12 from https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd to build tracker '/tmp/pip-req-tracker-a44abybs' 2020-11-25T20:52:52,035 Running setup.py (path:/tmp/pip-wheel-dtxyec78/jcvi/setup.py) egg_info for package jcvi 2020-11-25T20:52:52,036 Created temporary directory: /tmp/pip-pip-egg-info-ck01asd3 2020-11-25T20:52:52,036 Running command python setup.py egg_info 2020-11-25T20:52:54,454 running egg_info 2020-11-25T20:52:54,456 creating /tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info 2020-11-25T20:52:54,457 writing /tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info/PKG-INFO 2020-11-25T20:52:54,461 writing dependency_links to /tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info/dependency_links.txt 2020-11-25T20:52:54,463 writing requirements to /tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info/requires.txt 2020-11-25T20:52:54,464 writing top-level names to /tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info/top_level.txt 2020-11-25T20:52:54,466 writing manifest file '/tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info/SOURCES.txt' 2020-11-25T20:52:54,493 reading manifest file '/tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info/SOURCES.txt' 2020-11-25T20:52:54,495 reading manifest template 'MANIFEST.in' 2020-11-25T20:52:54,508 writing manifest file '/tmp/pip-pip-egg-info-ck01asd3/jcvi.egg-info/SOURCES.txt' 2020-11-25T20:52:54,509 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.12' to '1.0.12' 2020-11-25T20:52:54,510 warnings.warn(tmpl.format(**locals())) 2020-11-25T20:52:54,630 Source in /tmp/pip-wheel-dtxyec78/jcvi has version 1.0.12, which satisfies requirement jcvi==1.0.12 from https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd 2020-11-25T20:52:54,632 Removed jcvi==1.0.12 from https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd from build tracker '/tmp/pip-req-tracker-a44abybs' 2020-11-25T20:52:54,636 Building wheels for collected packages: jcvi 2020-11-25T20:52:54,642 Created temporary directory: /tmp/pip-wheel-0tlen55b 2020-11-25T20:52:54,643 Building wheel for jcvi (setup.py): started 2020-11-25T20:52:54,643 Destination directory: /tmp/pip-wheel-0tlen55b 2020-11-25T20:52:54,643 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dtxyec78/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dtxyec78/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0tlen55b 2020-11-25T20:52:56,061 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.12' to '1.0.12' 2020-11-25T20:52:56,061 warnings.warn(tmpl.format(**locals())) 2020-11-25T20:52:56,116 running bdist_wheel 2020-11-25T20:52:56,120 running build 2020-11-25T20:52:56,121 running build_py 2020-11-25T20:52:56,126 creating build 2020-11-25T20:52:56,126 creating build/lib.linux-armv7l-3.7 2020-11-25T20:52:56,127 creating build/lib.linux-armv7l-3.7/jcvi 2020-11-25T20:52:56,128 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2020-11-25T20:52:56,130 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2020-11-25T20:52:56,133 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,133 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,136 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,138 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,141 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,143 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,146 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,148 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,151 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,153 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,155 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,157 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,160 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-25T20:52:56,164 creating build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,165 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,167 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,169 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,172 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,174 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,178 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,184 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,187 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,189 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,191 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,194 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,196 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,198 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,200 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,203 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,205 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,210 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,212 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,215 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,217 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,220 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,222 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,225 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,227 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,230 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,232 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,234 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,236 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,240 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,243 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,249 creating build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,249 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,252 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,255 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,257 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,260 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,263 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,266 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,269 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,271 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,273 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-25T20:52:56,276 creating build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,277 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,280 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,282 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,284 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,286 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,289 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,291 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,294 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,296 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,299 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,301 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,304 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,306 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,309 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,312 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,313 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,315 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-25T20:52:56,320 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,321 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,324 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,327 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,329 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,332 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,334 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,336 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,339 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,341 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,344 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,346 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,349 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,353 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,355 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,358 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,362 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,366 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,369 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,372 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,378 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,382 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,386 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,389 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,392 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,395 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,397 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,400 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,403 creating build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,404 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,412 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,418 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,423 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,427 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,431 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,436 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,441 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,446 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,451 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,454 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,459 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,463 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,468 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,470 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-25T20:52:56,476 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,477 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,481 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,485 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,489 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,493 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,497 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,501 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,505 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,509 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,512 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,513 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,516 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-25T20:52:56,521 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,522 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,526 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,530 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,539 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,545 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,548 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,550 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,553 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,556 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,559 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,562 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,565 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,568 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,570 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,573 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,575 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,577 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,580 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,582 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,584 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,586 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,588 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,591 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-25T20:52:56,595 creating build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,596 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,598 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,600 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,603 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,606 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,608 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,610 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,613 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,617 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,620 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,622 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,625 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,627 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,630 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,632 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,634 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,637 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,639 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,641 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,644 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,646 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,648 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,650 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,653 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,656 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,659 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,661 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,664 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-25T20:52:56,667 creating build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,668 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,671 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,674 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,676 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,678 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,682 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,685 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,688 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,691 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,694 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,695 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-25T20:52:56,700 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,701 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,702 running egg_info 2020-11-25T20:52:56,713 writing jcvi.egg-info/PKG-INFO 2020-11-25T20:52:56,715 writing dependency_links to jcvi.egg-info/dependency_links.txt 2020-11-25T20:52:56,717 writing requirements to jcvi.egg-info/requires.txt 2020-11-25T20:52:56,718 writing top-level names to jcvi.egg-info/top_level.txt 2020-11-25T20:52:56,740 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-25T20:52:56,747 reading manifest template 'MANIFEST.in' 2020-11-25T20:52:56,763 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-25T20:52:56,770 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:52:56,773 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:52:56,775 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,778 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,783 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,786 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,789 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,793 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,796 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,798 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,801 copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,809 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,812 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,817 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,820 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-25T20:52:56,841 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2020-11-25T20:52:56,843 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.12' 2020-11-25T20:52:56,843 running build_ext 2020-11-25T20:52:57,060 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2020-11-25T20:52:57,931 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dtxyec78/jcvi/jcvi/assembly/chic.pyx 2020-11-25T20:52:57,931 tree = Parsing.p_module(s, pxd, full_module_name) 2020-11-25T20:52:59,591 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2020-11-25T20:53:00,207 building 'jcvi.assembly.chic' extension 2020-11-25T20:53:00,208 creating build/temp.linux-armv7l-3.7 2020-11-25T20:53:00,208 creating build/temp.linux-armv7l-3.7/jcvi 2020-11-25T20:53:00,209 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2020-11-25T20:53:00,209 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2020-11-25T20:53:01,896 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-11-25T20:53:01,897 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-11-25T20:53:01,897 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-11-25T20:53:01,897 from jcvi/assembly/chic.c:610: 2020-11-25T20:53:01,898 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-11-25T20:53:01,898 #warning "Using deprecated NumPy API, disable it with " \ 2020-11-25T20:53:01,898 ^~~~~~~ 2020-11-25T20:53:05,848 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2020-11-25T20:53:06,083 building 'jcvi.formats.cblast' extension 2020-11-25T20:53:06,084 creating build/temp.linux-armv7l-3.7/jcvi/formats 2020-11-25T20:53:06,084 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2020-11-25T20:53:13,137 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2020-11-25T20:53:13,306 installing to build/bdist.linux-armv7l/wheel 2020-11-25T20:53:13,307 running install 2020-11-25T20:53:13,308 running install_lib 2020-11-25T20:53:13,313 creating build/bdist.linux-armv7l 2020-11-25T20:53:13,313 creating build/bdist.linux-armv7l/wheel 2020-11-25T20:53:13,316 creating build/bdist.linux-armv7l/wheel/jcvi 2020-11-25T20:53:13,318 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,319 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,323 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,327 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,331 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,333 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,336 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,339 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,341 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,344 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,346 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,349 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,351 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-25T20:53:13,354 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,355 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,358 copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,360 copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,363 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,365 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,369 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,374 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,377 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,379 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,382 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,384 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,387 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,389 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,408 copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,410 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,413 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,415 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,419 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,421 copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,423 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,425 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,428 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,430 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,433 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,435 copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,438 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,441 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,443 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,445 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,447 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,452 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,455 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-25T20:53:13,460 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,462 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,465 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,467 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,470 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,474 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,477 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,481 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,484 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,488 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,490 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-25T20:53:13,494 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,495 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,499 copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,503 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,504 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,507 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,511 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,513 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,516 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,521 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,524 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,527 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,531 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,535 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,539 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,542 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,545 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,547 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-25T20:53:13,554 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,557 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,560 copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,563 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,566 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,569 copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,572 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,576 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,578 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,582 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,585 copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,588 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,592 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,594 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,597 copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-25T20:53:13,602 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,603 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,606 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,610 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,614 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,617 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,620 copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,623 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,626 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,630 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,633 copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,636 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,639 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,642 copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,645 copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,648 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,651 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,656 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,659 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,663 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,668 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,672 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,676 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,678 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,681 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,685 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,688 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,690 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,698 copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,701 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-25T20:53:13,704 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,705 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,709 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,714 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,717 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,719 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,721 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,725 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,728 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,731 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,734 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,736 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,740 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,743 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,746 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,748 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-25T20:53:13,751 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-25T20:53:13,755 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,756 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,758 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,761 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,764 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,767 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,770 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,772 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,775 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,778 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,781 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,783 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,785 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-25T20:53:13,790 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,791 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,794 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,797 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,800 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,803 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,806 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,808 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,810 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,814 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,816 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,819 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,822 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,824 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,827 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,830 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,833 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,835 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,838 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,841 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,843 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,845 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,848 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,851 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-25T20:53:13,854 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-25T20:53:13,857 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,858 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,861 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,863 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,867 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,871 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,873 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,875 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,879 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,884 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,887 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,890 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,892 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,895 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,898 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,901 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,903 copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,906 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,908 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,911 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,914 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,916 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,918 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,921 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,924 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,927 copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,930 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,931 copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,934 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-25T20:53:13,938 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,939 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,942 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,946 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,949 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,951 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,956 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,959 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,961 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,963 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,966 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,968 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-25T20:53:13,971 running install_egg_info 2020-11-25T20:53:13,982 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.12-py3.7.egg-info 2020-11-25T20:53:13,1000 running install_scripts 2020-11-25T20:53:14,073 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-11-25T20:53:14,080 creating build/bdist.linux-armv7l/wheel/jcvi-1.0.12.dist-info/WHEEL 2020-11-25T20:53:14,083 creating '/tmp/pip-wheel-0tlen55b/jcvi-1.0.12-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-11-25T20:53:14,086 adding 'jcvi/__init__.py' 2020-11-25T20:53:14,087 adding 'jcvi/_version.py' 2020-11-25T20:53:14,090 adding 'jcvi/algorithms/__init__.py' 2020-11-25T20:53:14,091 adding 'jcvi/algorithms/__main__.py' 2020-11-25T20:53:14,093 adding 'jcvi/algorithms/ec.py' 2020-11-25T20:53:14,095 adding 'jcvi/algorithms/formula.py' 2020-11-25T20:53:14,098 adding 'jcvi/algorithms/graph.py' 2020-11-25T20:53:14,100 adding 'jcvi/algorithms/lis.py' 2020-11-25T20:53:14,103 adding 'jcvi/algorithms/lpsolve.py' 2020-11-25T20:53:14,106 adding 'jcvi/algorithms/matrix.py' 2020-11-25T20:53:14,107 adding 'jcvi/algorithms/maxsum.py' 2020-11-25T20:53:14,108 adding 'jcvi/algorithms/ml.py' 2020-11-25T20:53:14,110 adding 'jcvi/algorithms/supermap.py' 2020-11-25T20:53:14,112 adding 'jcvi/algorithms/tsp.py' 2020-11-25T20:53:14,114 adding 'jcvi/annotation/__init__.py' 2020-11-25T20:53:14,116 adding 'jcvi/annotation/__main__.py' 2020-11-25T20:53:14,119 adding 'jcvi/annotation/ahrd.py' 2020-11-25T20:53:14,121 adding 'jcvi/annotation/automaton.py' 2020-11-25T20:53:14,123 adding 'jcvi/annotation/depth.py' 2020-11-25T20:53:14,125 adding 'jcvi/annotation/evm.py' 2020-11-25T20:53:14,127 adding 'jcvi/annotation/maker.py' 2020-11-25T20:53:14,130 adding 'jcvi/annotation/pasa.py' 2020-11-25T20:53:14,132 adding 'jcvi/annotation/qc.py' 2020-11-25T20:53:14,139 adding 'jcvi/annotation/reformat.py' 2020-11-25T20:53:14,141 adding 'jcvi/annotation/stats.py' 2020-11-25T20:53:14,143 adding 'jcvi/annotation/train.py' 2020-11-25T20:53:14,145 adding 'jcvi/apps/__init__.py' 2020-11-25T20:53:14,146 adding 'jcvi/apps/__main__.py' 2020-11-25T20:53:14,149 adding 'jcvi/apps/align.py' 2020-11-25T20:53:14,158 adding 'jcvi/apps/base.py' 2020-11-25T20:53:14,161 adding 'jcvi/apps/biomart.py' 2020-11-25T20:53:14,162 adding 'jcvi/apps/blastplus.py' 2020-11-25T20:53:14,164 adding 'jcvi/apps/bowtie.py' 2020-11-25T20:53:14,166 adding 'jcvi/apps/bwa.py' 2020-11-25T20:53:14,168 adding 'jcvi/apps/cap3.py' 2020-11-25T20:53:14,169 adding 'jcvi/apps/cdhit.py' 2020-11-25T20:53:14,171 adding 'jcvi/apps/console.py' 2020-11-25T20:53:14,173 adding 'jcvi/apps/emboss.py' 2020-11-25T20:53:14,176 adding 'jcvi/apps/fetch.py' 2020-11-25T20:53:14,179 adding 'jcvi/apps/gbsubmit.py' 2020-11-25T20:53:14,181 adding 'jcvi/apps/gmap.py' 2020-11-25T20:53:14,184 adding 'jcvi/apps/grid.py' 2020-11-25T20:53:14,189 adding 'jcvi/apps/ks.py' 2020-11-25T20:53:14,192 adding 'jcvi/apps/lastz.py' 2020-11-25T20:53:14,193 adding 'jcvi/apps/mask.py' 2020-11-25T20:53:14,198 adding 'jcvi/apps/phylo.py' 2020-11-25T20:53:14,200 adding 'jcvi/apps/r.py' 2020-11-25T20:53:14,202 adding 'jcvi/apps/restriction.py' 2020-11-25T20:53:14,203 adding 'jcvi/apps/script.py' 2020-11-25T20:53:14,205 adding 'jcvi/apps/softlink.py' 2020-11-25T20:53:14,206 adding 'jcvi/apps/tesseract.py' 2020-11-25T20:53:14,211 adding 'jcvi/apps/uclust.py' 2020-11-25T20:53:14,213 adding 'jcvi/apps/uniprot.py' 2020-11-25T20:53:14,214 adding 'jcvi/apps/vecscreen.py' 2020-11-25T20:53:14,217 adding 'jcvi/assembly/__init__.py' 2020-11-25T20:53:14,218 adding 'jcvi/assembly/__main__.py' 2020-11-25T20:53:14,228 adding 'jcvi/assembly/allmaps.py' 2020-11-25T20:53:14,231 adding 'jcvi/assembly/allpaths.py' 2020-11-25T20:53:14,233 adding 'jcvi/assembly/amos.py' 2020-11-25T20:53:14,235 adding 'jcvi/assembly/automaton.py' 2020-11-25T20:53:14,237 adding 'jcvi/assembly/bambus.py' 2020-11-25T20:53:14,238 adding 'jcvi/assembly/base.py' 2020-11-25T20:53:14,243 adding 'jcvi/assembly/ca.py' 2020-11-25T20:53:14,293 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2020-11-25T20:53:14,296 adding 'jcvi/assembly/chic.pyx' 2020-11-25T20:53:14,298 adding 'jcvi/assembly/coverage.py' 2020-11-25T20:53:14,300 adding 'jcvi/assembly/gaps.py' 2020-11-25T20:53:14,302 adding 'jcvi/assembly/geneticmap.py' 2020-11-25T20:53:14,307 adding 'jcvi/assembly/goldenpath.py' 2020-11-25T20:53:14,315 adding 'jcvi/assembly/hic.py' 2020-11-25T20:53:14,321 adding 'jcvi/assembly/kmer.py' 2020-11-25T20:53:14,323 adding 'jcvi/assembly/meraculous.py' 2020-11-25T20:53:14,325 adding 'jcvi/assembly/opticalmap.py' 2020-11-25T20:53:14,330 adding 'jcvi/assembly/patch.py' 2020-11-25T20:53:14,332 adding 'jcvi/assembly/pbjelly.py' 2020-11-25T20:53:14,335 adding 'jcvi/assembly/postprocess.py' 2020-11-25T20:53:14,338 adding 'jcvi/assembly/preprocess.py' 2020-11-25T20:53:14,340 adding 'jcvi/assembly/sim.py' 2020-11-25T20:53:14,342 adding 'jcvi/assembly/soap.py' 2020-11-25T20:53:14,344 adding 'jcvi/assembly/sspace.py' 2020-11-25T20:53:14,347 adding 'jcvi/assembly/syntenypath.py' 2020-11-25T20:53:14,348 adding 'jcvi/assembly/trinity.py' 2020-11-25T20:53:14,350 adding 'jcvi/assembly/unitig.py' 2020-11-25T20:53:14,353 adding 'jcvi/compara/__init__.py' 2020-11-25T20:53:14,354 adding 'jcvi/compara/__main__.py' 2020-11-25T20:53:14,356 adding 'jcvi/compara/blastfilter.py' 2020-11-25T20:53:14,360 adding 'jcvi/compara/catalog.py' 2020-11-25T20:53:14,363 adding 'jcvi/compara/fractionation.py' 2020-11-25T20:53:14,366 adding 'jcvi/compara/pad.py' 2020-11-25T20:53:14,367 adding 'jcvi/compara/phylogeny.py' 2020-11-25T20:53:14,369 adding 'jcvi/compara/quota.py' 2020-11-25T20:53:14,371 adding 'jcvi/compara/reconstruct.py' 2020-11-25T20:53:14,373 adding 'jcvi/compara/synfind.py' 2020-11-25T20:53:14,382 adding 'jcvi/compara/synteny.py' 2020-11-25T20:53:14,385 adding 'jcvi/formats/__init__.py' 2020-11-25T20:53:14,386 adding 'jcvi/formats/__main__.py' 2020-11-25T20:53:14,387 adding 'jcvi/formats/ace.py' 2020-11-25T20:53:14,395 adding 'jcvi/formats/agp.py' 2020-11-25T20:53:14,400 adding 'jcvi/formats/base.py' 2020-11-25T20:53:14,410 adding 'jcvi/formats/bed.py' 2020-11-25T20:53:14,416 adding 'jcvi/formats/blast.py' 2020-11-25T20:53:14,418 adding 'jcvi/formats/btab.py' 2020-11-25T20:53:14,523 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2020-11-25T20:53:14,528 adding 'jcvi/formats/cblast.pyx' 2020-11-25T20:53:14,529 adding 'jcvi/formats/cdt.py' 2020-11-25T20:53:14,531 adding 'jcvi/formats/chain.py' 2020-11-25T20:53:14,533 adding 'jcvi/formats/contig.py' 2020-11-25T20:53:14,535 adding 'jcvi/formats/coords.py' 2020-11-25T20:53:14,537 adding 'jcvi/formats/excel.py' 2020-11-25T20:53:14,547 adding 'jcvi/formats/fasta.py' 2020-11-25T20:53:14,552 adding 'jcvi/formats/fastq.py' 2020-11-25T20:53:14,553 adding 'jcvi/formats/fpc.py' 2020-11-25T20:53:14,556 adding 'jcvi/formats/genbank.py' 2020-11-25T20:53:14,571 adding 'jcvi/formats/gff.py' 2020-11-25T20:53:14,573 adding 'jcvi/formats/html.py' 2020-11-25T20:53:14,575 adding 'jcvi/formats/maf.py' 2020-11-25T20:53:14,576 adding 'jcvi/formats/obo.py' 2020-11-25T20:53:14,578 adding 'jcvi/formats/paf.py' 2020-11-25T20:53:14,579 adding 'jcvi/formats/pdf.py' 2020-11-25T20:53:14,581 adding 'jcvi/formats/posmap.py' 2020-11-25T20:53:14,583 adding 'jcvi/formats/psl.py' 2020-11-25T20:53:14,584 adding 'jcvi/formats/pyblast.py' 2020-11-25T20:53:14,588 adding 'jcvi/formats/sam.py' 2020-11-25T20:53:14,590 adding 'jcvi/formats/sbt.py' 2020-11-25T20:53:14,591 adding 'jcvi/formats/sizes.py' 2020-11-25T20:53:14,595 adding 'jcvi/formats/vcf.py' 2020-11-25T20:53:14,598 adding 'jcvi/graphics/__init__.py' 2020-11-25T20:53:14,599 adding 'jcvi/graphics/__main__.py' 2020-11-25T20:53:14,602 adding 'jcvi/graphics/align.py' 2020-11-25T20:53:14,604 adding 'jcvi/graphics/assembly.py' 2020-11-25T20:53:14,608 adding 'jcvi/graphics/base.py' 2020-11-25T20:53:14,610 adding 'jcvi/graphics/blastplot.py' 2020-11-25T20:53:14,613 adding 'jcvi/graphics/chromosome.py' 2020-11-25T20:53:14,615 adding 'jcvi/graphics/coverage.py' 2020-11-25T20:53:14,618 adding 'jcvi/graphics/dotplot.py' 2020-11-25T20:53:14,621 adding 'jcvi/graphics/glyph.py' 2020-11-25T20:53:14,625 adding 'jcvi/graphics/grabseeds.py' 2020-11-25T20:53:14,626 adding 'jcvi/graphics/graph.py' 2020-11-25T20:53:14,628 adding 'jcvi/graphics/heatmap.py' 2020-11-25T20:53:14,630 adding 'jcvi/graphics/histogram.py' 2020-11-25T20:53:14,632 adding 'jcvi/graphics/karyotype.py' 2020-11-25T20:53:14,637 adding 'jcvi/graphics/landscape.py' 2020-11-25T20:53:14,638 adding 'jcvi/graphics/logo.py' 2020-11-25T20:53:14,640 adding 'jcvi/graphics/mummerplot.py' 2020-11-25T20:53:14,642 adding 'jcvi/graphics/synteny.py' 2020-11-25T20:53:14,644 adding 'jcvi/graphics/table.py' 2020-11-25T20:53:14,647 adding 'jcvi/graphics/tree.py' 2020-11-25T20:53:14,649 adding 'jcvi/graphics/wheel.py' 2020-11-25T20:53:14,651 adding 'jcvi/graphics/whisker.py' 2020-11-25T20:53:14,653 adding 'jcvi/projects/__init__.py' 2020-11-25T20:53:14,654 adding 'jcvi/projects/__main__.py' 2020-11-25T20:53:14,657 adding 'jcvi/projects/age.py' 2020-11-25T20:53:14,658 adding 'jcvi/projects/alfalfa.py' 2020-11-25T20:53:14,661 adding 'jcvi/projects/allmaps.py' 2020-11-25T20:53:14,663 adding 'jcvi/projects/bites.py' 2020-11-25T20:53:14,664 adding 'jcvi/projects/heterosis.py' 2020-11-25T20:53:14,667 adding 'jcvi/projects/ies.py' 2020-11-25T20:53:14,670 adding 'jcvi/projects/misc.py' 2020-11-25T20:53:14,674 adding 'jcvi/projects/napus.py' 2020-11-25T20:53:14,676 adding 'jcvi/projects/pineapple.py' 2020-11-25T20:53:14,678 adding 'jcvi/projects/pistachio.py' 2020-11-25T20:53:14,687 adding 'jcvi/projects/str.py' 2020-11-25T20:53:14,691 adding 'jcvi/projects/synfind.py' 2020-11-25T20:53:14,694 adding 'jcvi/projects/tgbs.py' 2020-11-25T20:53:14,696 adding 'jcvi/utils/__init__.py' 2020-11-25T20:53:14,697 adding 'jcvi/utils/__main__.py' 2020-11-25T20:53:14,700 adding 'jcvi/utils/aws.py' 2020-11-25T20:53:14,702 adding 'jcvi/utils/brewer2mpl.py' 2020-11-25T20:53:14,705 adding 'jcvi/utils/cbook.py' 2020-11-25T20:53:14,707 adding 'jcvi/utils/counter.py' 2020-11-25T20:53:14,709 adding 'jcvi/utils/db.py' 2020-11-25T20:53:14,711 adding 'jcvi/utils/ez_setup.py' 2020-11-25T20:53:14,713 adding 'jcvi/utils/grouper.py' 2020-11-25T20:53:14,715 adding 'jcvi/utils/iter.py' 2020-11-25T20:53:14,717 adding 'jcvi/utils/natsort.py' 2020-11-25T20:53:14,719 adding 'jcvi/utils/orderedcollections.py' 2020-11-25T20:53:14,722 adding 'jcvi/utils/progressbar.py' 2020-11-25T20:53:14,724 adding 'jcvi/utils/range.py' 2020-11-25T20:53:14,726 adding 'jcvi/utils/table.py' 2020-11-25T20:53:14,728 adding 'jcvi/utils/taxonomy.py' 2020-11-25T20:53:14,731 adding 'jcvi/utils/webcolors.py' 2020-11-25T20:53:14,735 adding 'jcvi/utils/data/Airswing.ttf' 2020-11-25T20:53:14,752 adding 'jcvi/utils/data/Collegia.ttf' 2020-11-25T20:53:14,756 adding 'jcvi/utils/data/HookedUp.ttf' 2020-11-25T20:53:14,762 adding 'jcvi/utils/data/Humor-Sans.ttf' 2020-11-25T20:53:14,767 adding 'jcvi/utils/data/TREDs.meta.csv' 2020-11-25T20:53:14,768 adding 'jcvi/utils/data/__init__.py' 2020-11-25T20:53:14,769 adding 'jcvi/utils/data/adapters.fasta' 2020-11-25T20:53:14,771 adding 'jcvi/utils/data/blosum80.mat' 2020-11-25T20:53:14,773 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2020-11-25T20:53:14,779 adding 'jcvi/utils/data/colorbrewer_all_schemes.json' 2020-11-25T20:53:14,782 adding 'jcvi/utils/data/colorchecker.txt' 2020-11-25T20:53:14,789 adding 'jcvi/utils/data/hg38.band.txt' 2020-11-25T20:53:14,792 adding 'jcvi/utils/data/hg38.chrom.sizes' 2020-11-25T20:53:14,793 adding 'jcvi/utils/data/instance.json' 2020-11-25T20:53:14,795 adding 'jcvi/variation/__init__.py' 2020-11-25T20:53:14,796 adding 'jcvi/variation/__main__.py' 2020-11-25T20:53:14,801 adding 'jcvi/variation/cnv.py' 2020-11-25T20:53:14,803 adding 'jcvi/variation/deconvolute.py' 2020-11-25T20:53:14,805 adding 'jcvi/variation/delly.py' 2020-11-25T20:53:14,808 adding 'jcvi/variation/impute.py' 2020-11-25T20:53:14,809 adding 'jcvi/variation/phase.py' 2020-11-25T20:53:14,811 adding 'jcvi/variation/snp.py' 2020-11-25T20:53:14,818 adding 'jcvi/variation/str.py' 2020-11-25T20:53:14,820 adding 'jcvi/variation/tassel.py' 2020-11-25T20:53:14,822 adding 'jcvi-1.0.12.dist-info/LICENSE' 2020-11-25T20:53:14,824 adding 'jcvi-1.0.12.dist-info/METADATA' 2020-11-25T20:53:14,825 adding 'jcvi-1.0.12.dist-info/WHEEL' 2020-11-25T20:53:14,826 adding 'jcvi-1.0.12.dist-info/top_level.txt' 2020-11-25T20:53:14,828 adding 'jcvi-1.0.12.dist-info/RECORD' 2020-11-25T20:53:14,851 removing build/bdist.linux-armv7l/wheel 2020-11-25T20:53:15,187 Building wheel for jcvi (setup.py): finished with status 'done' 2020-11-25T20:53:15,205 Created wheel for jcvi: filename=jcvi-1.0.12-cp37-cp37m-linux_armv7l.whl size=1209150 sha256=b83746952403efa2003d9672e32ca60af5ec7ba6a8991e8c235b10671f0f112b 2020-11-25T20:53:15,205 Stored in directory: /tmp/pip-ephem-wheel-cache-2z82ss4a/wheels/79/8b/95/4c8b67b969aee57950da9afa8c8145302ea3a68b3a28a35f93 2020-11-25T20:53:15,208 Successfully built jcvi 2020-11-25T20:53:15,253 Removed build tracker: '/tmp/pip-req-tracker-a44abybs'