2020-11-25T22:45:10,639 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-11-25T22:45:11,374 Created temporary directory: /tmp/pip-ephem-wheel-cache-q0rd6w93 2020-11-25T22:45:11,379 Created temporary directory: /tmp/pip-req-tracker-y62ge1vy 2020-11-25T22:45:11,379 Initialized build tracking at /tmp/pip-req-tracker-y62ge1vy 2020-11-25T22:45:11,380 Created build tracker: /tmp/pip-req-tracker-y62ge1vy 2020-11-25T22:45:11,380 Entered build tracker: /tmp/pip-req-tracker-y62ge1vy 2020-11-25T22:45:11,382 Created temporary directory: /tmp/pip-wheel-jfd0_meh 2020-11-25T22:45:11,402 1 location(s) to search for versions of sequana: 2020-11-25T22:45:11,402 * https://pypi.org/simple/sequana/ 2020-11-25T22:45:11,402 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2020-11-25T22:45:11,405 Getting page https://pypi.org/simple/sequana/ 2020-11-25T22:45:11,409 Found 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https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz#sha256=11c51f29d0d696451896fc56e940e059d191b6f17616776e08eb5b1c5ac5dda5 (from https://pypi.org/simple/sequana/), version: 0.8.2 2020-11-25T22:45:11,836 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz#sha256=4c47176589613a57227e742b9f31144f6714dad53078708baa4a3d1ea3a16994 (from https://pypi.org/simple/sequana/), version: 0.8.3 2020-11-25T22:45:11,837 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz#sha256=a11baec596d779f399512d3fe853ecdd582a16691880c495509d34d8cc66e2e7 (from https://pypi.org/simple/sequana/), version: 0.8.4 2020-11-25T22:45:11,838 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz#sha256=a1c0b4f766b774380d74c90cc4af7b6c222a2d1630c0be4a906fff8d796ffe08 (from https://pypi.org/simple/sequana/), version: 0.8.5 2020-11-25T22:45:11,838 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz#sha256=fa651ddd8a29046d6e5aec081ad30b8b0469b8e81fb2a59cf4d8bb20c4fe5a2f (from https://pypi.org/simple/sequana/), version: 0.8.6 2020-11-25T22:45:11,839 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 (from https://pypi.org/simple/sequana/), version: 0.9.0 2020-11-25T22:45:11,840 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2020-11-25T22:45:11,841 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2020-11-25T22:45:11,842 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2020-11-25T22:45:11,843 Found link https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 (from https://pypi.org/simple/sequana/), version: 0.9.4 2020-11-25T22:45:11,878 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2020-11-25T22:45:11,880 Using version 0.9.4 (newest of versions: 0.9.4) 2020-11-25T22:45:11,889 Collecting sequana==0.9.4 2020-11-25T22:45:11,895 Created temporary directory: /tmp/pip-unpack-3miigbvi 2020-11-25T22:45:12,821 Downloading sequana-0.9.4.tar.gz (21.1 MB) 2020-11-25T22:45:26,809 Added sequana==0.9.4 from https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 to build tracker '/tmp/pip-req-tracker-y62ge1vy' 2020-11-25T22:45:26,814 Running setup.py (path:/tmp/pip-wheel-jfd0_meh/sequana/setup.py) egg_info for package sequana 2020-11-25T22:45:26,815 Created temporary directory: /tmp/pip-pip-egg-info-t3qklhiz 2020-11-25T22:45:26,816 Running command python setup.py egg_info 2020-11-25T22:45:29,673 running egg_info 2020-11-25T22:45:29,678 creating /tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info 2020-11-25T22:45:29,682 writing dependency_links to /tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/dependency_links.txt 2020-11-25T22:45:29,685 writing top-level names to /tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/top_level.txt 2020-11-25T22:45:29,687 writing requirements to /tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/requires.txt 2020-11-25T22:45:29,690 writing /tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/PKG-INFO 2020-11-25T22:45:29,698 writing entry points to /tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/entry_points.txt 2020-11-25T22:45:29,702 writing manifest file '/tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/SOURCES.txt' 2020-11-25T22:45:30,896 reading manifest file '/tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/SOURCES.txt' 2020-11-25T22:45:30,900 reading manifest template 'MANIFEST.in' 2020-11-25T22:45:30,907 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-11-25T22:45:30,912 warning: no previously-included files matching '*pyc' found under directory '*' 2020-11-25T22:45:31,776 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-11-25T22:45:31,779 warning: no previously-included files matching '*' found under directory 'test' 2020-11-25T22:45:31,783 warning: no previously-included files found matching 'sequana/rm2.py' 2020-11-25T22:45:31,841 writing manifest file '/tmp/pip-pip-egg-info-t3qklhiz/sequana.egg-info/SOURCES.txt' 2020-11-25T22:45:31,985 Source in /tmp/pip-wheel-jfd0_meh/sequana has version 0.9.4, which satisfies requirement sequana==0.9.4 from https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 2020-11-25T22:45:31,987 Removed sequana==0.9.4 from https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 from build tracker '/tmp/pip-req-tracker-y62ge1vy' 2020-11-25T22:45:31,992 Building wheels for collected packages: sequana 2020-11-25T22:45:32,001 Created temporary directory: /tmp/pip-wheel-tauyyder 2020-11-25T22:45:32,002 Building wheel for sequana (setup.py): started 2020-11-25T22:45:32,003 Destination directory: /tmp/pip-wheel-tauyyder 2020-11-25T22:45:32,003 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jfd0_meh/sequana/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jfd0_meh/sequana/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tauyyder 2020-11-25T22:45:34,707 running bdist_wheel 2020-11-25T22:45:34,724 running build 2020-11-25T22:45:34,725 running build_py 2020-11-25T22:45:35,063 creating build 2020-11-25T22:45:35,064 creating build/lib 2020-11-25T22:45:35,065 creating build/lib/sequana 2020-11-25T22:45:35,068 copying sequana/demultiplex.py -> build/lib/sequana 2020-11-25T22:45:35,074 copying sequana/featurecounts.py -> build/lib/sequana 2020-11-25T22:45:35,079 copying sequana/annotations.py -> build/lib/sequana 2020-11-25T22:45:35,082 copying sequana/cpg_islands.py -> build/lib/sequana 2020-11-25T22:45:35,086 copying sequana/bed.py -> build/lib/sequana 2020-11-25T22:45:35,091 copying sequana/stats.py -> build/lib/sequana 2020-11-25T22:45:35,096 copying sequana/busco.py -> build/lib/sequana 2020-11-25T22:45:35,103 copying sequana/sequence.py -> build/lib/sequana 2020-11-25T22:45:35,113 copying sequana/running_median.py -> build/lib/sequana 2020-11-25T22:45:35,120 copying sequana/vcftools.py -> build/lib/sequana 2020-11-25T22:45:35,125 copying sequana/bedtools.py -> build/lib/sequana 2020-11-25T22:45:35,139 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2020-11-25T22:45:35,146 copying sequana/find_motif.py -> build/lib/sequana 2020-11-25T22:45:35,153 copying sequana/lazy.py -> build/lib/sequana 2020-11-25T22:45:35,158 copying sequana/iem.py -> build/lib/sequana 2020-11-25T22:45:35,165 copying sequana/krona.py -> build/lib/sequana 2020-11-25T22:45:35,170 copying sequana/adapters.py -> build/lib/sequana 2020-11-25T22:45:35,179 copying sequana/enrichment.py -> build/lib/sequana 2020-11-25T22:45:35,191 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2020-11-25T22:45:35,198 copying sequana/expdesign.py -> build/lib/sequana 2020-11-25T22:45:35,206 copying sequana/cnv.py -> build/lib/sequana 2020-11-25T22:45:35,211 copying sequana/pipelines_common.py -> build/lib/sequana 2020-11-25T22:45:35,220 copying sequana/kraken_builder.py -> build/lib/sequana 2020-11-25T22:45:35,229 copying sequana/summary.py -> build/lib/sequana 2020-11-25T22:45:35,236 copying sequana/gtf.py -> build/lib/sequana 2020-11-25T22:45:35,241 copying sequana/datatools.py -> build/lib/sequana 2020-11-25T22:45:35,247 copying sequana/fastq.py -> build/lib/sequana 2020-11-25T22:45:35,257 copying sequana/laa.py -> build/lib/sequana 2020-11-25T22:45:35,264 copying sequana/protein.py -> build/lib/sequana 2020-11-25T22:45:35,270 copying sequana/vcf_filter.py -> build/lib/sequana 2020-11-25T22:45:35,277 copying sequana/iuapc.py -> build/lib/sequana 2020-11-25T22:45:35,283 copying sequana/fasta.py -> build/lib/sequana 2020-11-25T22:45:35,290 copying sequana/assembly.py -> build/lib/sequana 2020-11-25T22:45:35,296 copying sequana/pacbio.py -> build/lib/sequana 2020-11-25T22:45:35,307 copying sequana/vst.py -> build/lib/sequana 2020-11-25T22:45:35,312 copying sequana/__init__.py -> build/lib/sequana 2020-11-25T22:45:35,318 copying sequana/salmon.py -> build/lib/sequana 2020-11-25T22:45:35,324 copying sequana/mh.py -> build/lib/sequana 2020-11-25T22:45:35,331 copying sequana/sniffer.py -> build/lib/sequana 2020-11-25T22:45:35,337 copying sequana/tools.py -> build/lib/sequana 2020-11-25T22:45:35,344 copying sequana/jsontool.py -> build/lib/sequana 2020-11-25T22:45:35,350 copying sequana/gff3.py -> build/lib/sequana 2020-11-25T22:45:35,356 copying sequana/mgi.py -> build/lib/sequana 2020-11-25T22:45:35,362 copying sequana/lazyimports.py -> build/lib/sequana 2020-11-25T22:45:35,368 copying sequana/snaketools.py -> build/lib/sequana 2020-11-25T22:45:35,381 copying sequana/kraken.py -> build/lib/sequana 2020-11-25T22:45:35,394 copying sequana/itol.py -> build/lib/sequana 2020-11-25T22:45:35,399 copying sequana/databases.py -> build/lib/sequana 2020-11-25T22:45:35,407 copying sequana/criteria.py -> build/lib/sequana 2020-11-25T22:45:35,413 copying sequana/iotools.py -> build/lib/sequana 2020-11-25T22:45:35,420 copying sequana/mixture.py -> build/lib/sequana 2020-11-25T22:45:35,427 copying sequana/errors.py -> build/lib/sequana 2020-11-25T22:45:35,432 copying sequana/misc.py -> build/lib/sequana 2020-11-25T22:45:35,438 copying sequana/isoseq.py -> build/lib/sequana 2020-11-25T22:45:35,446 copying sequana/fastqc.py -> build/lib/sequana 2020-11-25T22:45:35,453 copying sequana/cigar.py -> build/lib/sequana 2020-11-25T22:45:35,460 copying sequana/phred.py -> build/lib/sequana 2020-11-25T22:45:35,466 copying sequana/compare.py -> build/lib/sequana 2020-11-25T22:45:35,474 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2020-11-25T22:45:35,480 copying sequana/bamtools.py -> build/lib/sequana 2020-11-25T22:45:35,493 copying sequana/taxonomy.py -> build/lib/sequana 2020-11-25T22:45:35,501 copying sequana/rnadiff.py -> build/lib/sequana 2020-11-25T22:45:35,510 copying sequana/contigs.py -> build/lib/sequana 2020-11-25T22:45:35,517 copying sequana/coverage.py -> build/lib/sequana 2020-11-25T22:45:35,524 copying sequana/trf.py -> build/lib/sequana 2020-11-25T22:45:35,530 copying sequana/kegg.py -> build/lib/sequana 2020-11-25T22:45:35,541 copying sequana/genbank.py -> build/lib/sequana 2020-11-25T22:45:35,548 copying sequana/snpeff.py -> build/lib/sequana 2020-11-25T22:45:35,555 copying sequana/kmer.py -> build/lib/sequana 2020-11-25T22:45:35,560 copying sequana/canu_scanner.py -> build/lib/sequana 2020-11-25T22:45:35,571 creating build/lib/sequana/scripts 2020-11-25T22:45:35,574 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,582 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,588 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,592 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,597 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,603 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,607 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,613 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,620 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,627 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,633 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,640 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,647 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,655 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2020-11-25T22:45:35,666 creating build/lib/sequana/multiqc 2020-11-25T22:45:35,669 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,676 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,681 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,688 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,693 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,699 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,705 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,710 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,715 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,719 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,725 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2020-11-25T22:45:35,736 creating build/lib/sequana/viz 2020-11-25T22:45:35,739 copying sequana/viz/venn.py -> build/lib/sequana/viz 2020-11-25T22:45:35,746 copying sequana/viz/pca.py -> build/lib/sequana/viz 2020-11-25T22:45:35,751 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2020-11-25T22:45:35,755 copying sequana/viz/core.py -> build/lib/sequana/viz 2020-11-25T22:45:35,760 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2020-11-25T22:45:35,764 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2020-11-25T22:45:35,772 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2020-11-25T22:45:35,778 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2020-11-25T22:45:35,784 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2020-11-25T22:45:35,789 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2020-11-25T22:45:35,795 copying sequana/viz/mds.py -> build/lib/sequana/viz 2020-11-25T22:45:35,801 copying sequana/viz/anova.py -> build/lib/sequana/viz 2020-11-25T22:45:35,807 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2020-11-25T22:45:35,814 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2020-11-25T22:45:35,821 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2020-11-25T22:45:35,827 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2020-11-25T22:45:35,832 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2020-11-25T22:45:35,838 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2020-11-25T22:45:35,845 creating build/lib/sequana/utils 2020-11-25T22:45:35,847 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2020-11-25T22:45:35,855 copying sequana/utils/config.py -> build/lib/sequana/utils 2020-11-25T22:45:35,861 copying sequana/utils/tree.py -> build/lib/sequana/utils 2020-11-25T22:45:35,867 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2020-11-25T22:45:35,873 creating build/lib/sequana/rules 2020-11-25T22:45:35,875 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2020-11-25T22:45:35,881 creating build/lib/sequana/gui 2020-11-25T22:45:35,882 copying sequana/gui/help.py -> build/lib/sequana/gui 2020-11-25T22:45:35,887 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2020-11-25T22:45:35,898 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2020-11-25T22:45:35,904 copying sequana/gui/messages.py -> build/lib/sequana/gui 2020-11-25T22:45:35,909 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2020-11-25T22:45:35,915 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2020-11-25T22:45:35,921 copying sequana/gui/tools.py -> build/lib/sequana/gui 2020-11-25T22:45:35,928 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2020-11-25T22:45:35,934 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2020-11-25T22:45:35,939 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2020-11-25T22:45:35,945 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2020-11-25T22:45:35,951 copying sequana/gui/browser.py -> build/lib/sequana/gui 2020-11-25T22:45:35,957 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2020-11-25T22:45:35,963 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2020-11-25T22:45:35,969 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2020-11-25T22:45:35,979 copying sequana/gui/about.py -> build/lib/sequana/gui 2020-11-25T22:45:35,985 creating build/lib/sequana/plots 2020-11-25T22:45:35,987 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2020-11-25T22:45:35,994 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2020-11-25T22:45:35,1000 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2020-11-25T22:45:36,013 creating build/lib/sequana/modules_report 2020-11-25T22:45:36,016 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,022 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,027 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,033 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,040 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,046 copying sequana/modules_report/enrichment.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,053 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,058 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,063 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,068 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,072 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,075 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,081 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,089 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,094 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,101 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,108 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,116 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2020-11-25T22:45:36,124 creating build/lib/sequana/resources 2020-11-25T22:45:36,126 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2020-11-25T22:45:36,134 creating build/lib/sequana/sphinxext 2020-11-25T22:45:36,137 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2020-11-25T22:45:36,141 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2020-11-25T22:45:36,145 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2020-11-25T22:45:36,150 creating build/lib/sequana/pipelines 2020-11-25T22:45:36,152 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2020-11-25T22:45:36,157 creating build/lib/sequana/rules/SnpEff 2020-11-25T22:45:36,159 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2020-11-25T22:45:36,166 creating build/lib/sequana/rules/Pacbio 2020-11-25T22:45:36,168 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2020-11-25T22:45:36,175 creating build/lib/sequana/rules/Utils 2020-11-25T22:45:36,178 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2020-11-25T22:45:36,183 creating build/lib/sequana/rules/sambamba 2020-11-25T22:45:36,185 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2020-11-25T22:45:36,190 creating build/lib/sequana/rules/idr 2020-11-25T22:45:36,191 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2020-11-25T22:45:36,196 creating build/lib/sequana/rules/Taxonomy 2020-11-25T22:45:36,198 copying sequana/rules/Taxonomy/__init__.py -> build/lib/sequana/rules/Taxonomy 2020-11-25T22:45:36,206 creating build/lib/sequana/rules/Variant_caller 2020-11-25T22:45:36,208 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2020-11-25T22:45:36,215 creating build/lib/sequana/rules/Assembly 2020-11-25T22:45:36,218 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2020-11-25T22:45:36,223 creating build/lib/sequana/rules/picard-tools 2020-11-25T22:45:36,225 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2020-11-25T22:45:36,230 creating build/lib/sequana/rules/Adapters 2020-11-25T22:45:36,232 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2020-11-25T22:45:36,237 creating build/lib/sequana/rules/deeptools 2020-11-25T22:45:36,239 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2020-11-25T22:45:36,246 creating build/lib/sequana/rules/codecs 2020-11-25T22:45:36,249 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2020-11-25T22:45:36,256 creating build/lib/sequana/resources/data 2020-11-25T22:45:36,259 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2020-11-25T22:45:36,265 creating build/lib/sequana/resources/js 2020-11-25T22:45:36,267 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2020-11-25T22:45:36,272 creating build/lib/sequana/resources/templates 2020-11-25T22:45:36,274 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2020-11-25T22:45:36,278 creating build/lib/sequana/resources/snpeff 2020-11-25T22:45:36,280 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2020-11-25T22:45:36,287 creating build/lib/sequana/resources/canvas 2020-11-25T22:45:36,290 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2020-11-25T22:45:36,296 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2020-11-25T22:45:36,302 creating build/lib/sequana/resources/css 2020-11-25T22:45:36,304 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2020-11-25T22:45:36,308 creating build/lib/sequana/resources/images 2020-11-25T22:45:36,310 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2020-11-25T22:45:36,315 creating build/lib/sequana/resources/busco 2020-11-25T22:45:36,317 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2020-11-25T22:45:36,323 creating build/lib/sequana/resources/testing 2020-11-25T22:45:36,325 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2020-11-25T22:45:36,332 creating build/lib/sequana/resources/data/adapters 2020-11-25T22:45:36,335 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:37,457 creating build/lib/sequana/resources/testing/rnadiff 2020-11-25T22:45:37,459 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2020-11-25T22:45:38,286 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2020-11-25T22:45:38,293 copying sequana/rules/README.rst -> build/lib/sequana/rules 2020-11-25T22:45:38,298 creating build/lib/sequana/rules/bam_quality_filter 2020-11-25T22:45:38,301 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2020-11-25T22:45:38,307 creating build/lib/sequana/rules/multiqc 2020-11-25T22:45:38,310 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2020-11-25T22:45:38,316 creating build/lib/sequana/rules/bwa_mem_dynamic 2020-11-25T22:45:38,319 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2020-11-25T22:45:38,325 creating build/lib/sequana/rules/prokka 2020-11-25T22:45:38,328 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2020-11-25T22:45:38,334 creating build/lib/sequana/rules/rulegraph 2020-11-25T22:45:38,337 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2020-11-25T22:45:38,343 creating build/lib/sequana/rules/fastq_sampling 2020-11-25T22:45:38,346 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2020-11-25T22:45:38,352 creating build/lib/sequana/rules/tophat_mapping 2020-11-25T22:45:38,355 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2020-11-25T22:45:38,360 creating build/lib/sequana/rules/spikes_counting 2020-11-25T22:45:38,362 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2020-11-25T22:45:38,367 creating build/lib/sequana/rules/copy_multiple_files 2020-11-25T22:45:38,369 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2020-11-25T22:45:38,376 creating build/lib/sequana/rules/star_mapping 2020-11-25T22:45:38,379 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2020-11-25T22:45:38,386 creating build/lib/sequana/rules/remove_blacklist 2020-11-25T22:45:38,389 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2020-11-25T22:45:38,395 creating build/lib/sequana/rules/revcomp_rule 2020-11-25T22:45:38,397 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2020-11-25T22:45:38,402 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-11-25T22:45:38,404 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-11-25T22:45:38,409 creating build/lib/sequana/rules/preSARTools 2020-11-25T22:45:38,412 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2020-11-25T22:45:38,419 creating build/lib/sequana/rules/fastq_stats_dynamic 2020-11-25T22:45:38,422 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2020-11-25T22:45:38,429 creating build/lib/sequana/rules/conda 2020-11-25T22:45:38,432 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2020-11-25T22:45:38,437 creating build/lib/sequana/rules/rnaseqc 2020-11-25T22:45:38,439 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2020-11-25T22:45:38,444 creating build/lib/sequana/rules/bwa_bam_to_fastq 2020-11-25T22:45:38,446 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2020-11-25T22:45:38,451 creating build/lib/sequana/rules/bowtie1_index_dynamic 2020-11-25T22:45:38,454 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2020-11-25T22:45:38,461 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-11-25T22:45:38,464 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-11-25T22:45:38,471 creating build/lib/sequana/rules/indel_realigner 2020-11-25T22:45:38,474 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2020-11-25T22:45:38,479 creating build/lib/sequana/rules/bowtie2_index_dynamic 2020-11-25T22:45:38,481 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2020-11-25T22:45:38,486 creating build/lib/sequana/rules/feature_counts_dynamic 2020-11-25T22:45:38,488 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2020-11-25T22:45:38,494 creating build/lib/sequana/rules/igvtools 2020-11-25T22:45:38,497 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2020-11-25T22:45:38,504 creating build/lib/sequana/rules/summary_pipeline 2020-11-25T22:45:38,507 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2020-11-25T22:45:38,514 creating build/lib/sequana/rules/mapping_analysis 2020-11-25T22:45:38,516 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2020-11-25T22:45:38,521 creating build/lib/sequana/rules/dag 2020-11-25T22:45:38,523 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2020-11-25T22:45:38,530 creating build/lib/sequana/rules/salmon_index 2020-11-25T22:45:38,532 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2020-11-25T22:45:38,545 creating build/lib/sequana/rules/digital_normalisation 2020-11-25T22:45:38,547 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2020-11-25T22:45:38,555 creating build/lib/sequana/rules/samtools_sort 2020-11-25T22:45:38,557 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2020-11-25T22:45:38,564 creating build/lib/sequana/rules/SARTools 2020-11-25T22:45:38,567 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2020-11-25T22:45:38,575 creating build/lib/sequana/rules/chipuanar 2020-11-25T22:45:38,577 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2020-11-25T22:45:38,582 creating build/lib/sequana/rules/bed_to_gff 2020-11-25T22:45:38,584 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2020-11-25T22:45:38,589 creating build/lib/sequana/rules/spp 2020-11-25T22:45:38,591 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2020-11-25T22:45:38,597 creating build/lib/sequana/rules/fastqc_dynamic 2020-11-25T22:45:38,600 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2020-11-25T22:45:38,607 creating build/lib/sequana/rules/multiqc2 2020-11-25T22:45:38,610 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2020-11-25T22:45:38,617 creating build/lib/sequana/rules/sequana_coverage 2020-11-25T22:45:38,619 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2020-11-25T22:45:38,625 creating build/lib/sequana/rules/salmon_mapping 2020-11-25T22:45:38,627 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2020-11-25T22:45:38,632 creating build/lib/sequana/rules/miRNA_count_dynamic 2020-11-25T22:45:38,634 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2020-11-25T22:45:38,640 creating build/lib/sequana/rules/format_contigs 2020-11-25T22:45:38,643 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2020-11-25T22:45:38,650 creating build/lib/sequana/rules/bam_analysis 2020-11-25T22:45:38,653 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2020-11-25T22:45:38,659 creating build/lib/sequana/rules/extract_fasta_from_bed 2020-11-25T22:45:38,661 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2020-11-25T22:45:38,667 creating build/lib/sequana/rules/star_index 2020-11-25T22:45:38,669 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2020-11-25T22:45:38,674 creating build/lib/sequana/rules/samtools_depth 2020-11-25T22:45:38,676 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2020-11-25T22:45:38,683 creating build/lib/sequana/rules/bwa_index 2020-11-25T22:45:38,686 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2020-11-25T22:45:38,693 creating build/lib/sequana/rules/feature_counts 2020-11-25T22:45:38,696 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2020-11-25T22:45:38,702 creating build/lib/sequana/rules/quast 2020-11-25T22:45:38,704 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2020-11-25T22:45:38,709 creating build/lib/sequana/rules/DupRadar 2020-11-25T22:45:38,711 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2020-11-25T22:45:38,717 creating build/lib/sequana/rules/multiqc/2.0 2020-11-25T22:45:38,720 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2020-11-25T22:45:38,727 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-11-25T22:45:38,730 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-11-25T22:45:38,737 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-11-25T22:45:38,740 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-11-25T22:45:38,745 creating build/lib/sequana/rules/peak_calling 2020-11-25T22:45:38,746 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-11-25T22:45:38,749 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-11-25T22:45:38,755 creating build/lib/sequana/rules/Pacbio/pacbio_quality 2020-11-25T22:45:38,757 copying sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/Pacbio/pacbio_quality 2020-11-25T22:45:38,764 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2020-11-25T22:45:38,767 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2020-11-25T22:45:38,775 creating build/lib/sequana/rules/Utils/dynamic_copy 2020-11-25T22:45:38,777 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2020-11-25T22:45:38,783 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-25T22:45:38,785 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-25T22:45:38,791 creating build/lib/sequana/rules/sambamba/sambamba_filter 2020-11-25T22:45:38,793 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2020-11-25T22:45:38,799 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2020-11-25T22:45:38,801 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2020-11-25T22:45:38,809 creating build/lib/sequana/rules/idr/compute_idr 2020-11-25T22:45:38,812 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2020-11-25T22:45:38,819 creating build/lib/sequana/rules/idr/metrics_peaks 2020-11-25T22:45:38,821 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2020-11-25T22:45:38,827 creating build/lib/sequana/rules/idr/select_peaks 2020-11-25T22:45:38,829 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2020-11-25T22:45:38,835 creating build/lib/sequana/rules/idr/union_peaks 2020-11-25T22:45:38,837 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2020-11-25T22:45:38,843 creating build/lib/sequana/rules/idr/stats_peakCalling 2020-11-25T22:45:38,846 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2020-11-25T22:45:38,853 creating build/lib/sequana/rules/idr/preIDR_dynamic 2020-11-25T22:45:38,856 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2020-11-25T22:45:38,863 creating build/lib/sequana/rules/idr/intersectionApproach 2020-11-25T22:45:38,865 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2020-11-25T22:45:38,871 creating build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-11-25T22:45:38,873 copying sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-11-25T22:45:38,879 creating build/lib/sequana/rules/Taxonomy/fastq_screen 2020-11-25T22:45:38,881 copying sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen 2020-11-25T22:45:38,888 creating build/lib/sequana/rules/Variant_caller/freebayes 2020-11-25T22:45:38,891 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2020-11-25T22:45:38,899 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-25T22:45:38,901 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-25T22:45:38,907 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-25T22:45:38,909 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-25T22:45:38,915 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-11-25T22:45:38,917 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-11-25T22:45:38,923 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-25T22:45:38,926 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-25T22:45:38,933 creating build/lib/sequana/rules/Assembly/spades 2020-11-25T22:45:38,936 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2020-11-25T22:45:38,944 creating build/lib/sequana/rules/Assembly/busco_analysis 2020-11-25T22:45:38,946 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2020-11-25T22:45:38,951 creating build/lib/sequana/rules/Assembly/canu 2020-11-25T22:45:38,953 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2020-11-25T22:45:38,958 creating build/lib/sequana/rules/Assembly/busco 2020-11-25T22:45:38,960 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2020-11-25T22:45:38,967 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2020-11-25T22:45:38,970 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2020-11-25T22:45:38,978 creating build/lib/sequana/rules/picard-tools/add_read_group 2020-11-25T22:45:38,980 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2020-11-25T22:45:38,987 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-25T22:45:38,989 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-25T22:45:38,996 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-25T22:45:38,998 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-25T22:45:39,004 creating build/lib/sequana/rules/picard-tools/reorderSam 2020-11-25T22:45:39,007 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2020-11-25T22:45:39,013 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-25T22:45:39,016 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-25T22:45:39,023 creating build/lib/sequana/rules/Adapters/identify_adapters 2020-11-25T22:45:39,025 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2020-11-25T22:45:39,034 creating build/lib/sequana/rules/Adapters/cutadapt 2020-11-25T22:45:39,038 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2020-11-25T22:45:39,048 creating build/lib/sequana/rules/Adapters/alien_trimmer 2020-11-25T22:45:39,051 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2020-11-25T22:45:39,057 creating build/lib/sequana/rules/Adapters/adapter_removal 2020-11-25T22:45:39,060 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2020-11-25T22:45:39,067 creating build/lib/sequana/rules/deeptools/bamCoverage 2020-11-25T22:45:39,069 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2020-11-25T22:45:39,076 creating build/lib/sequana/rules/deeptools/plotCoverage 2020-11-25T22:45:39,077 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2020-11-25T22:45:39,083 creating build/lib/sequana/rules/deeptools/multiBamSummary 2020-11-25T22:45:39,085 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2020-11-25T22:45:39,091 creating build/lib/sequana/rules/deeptools/plotCorrelation 2020-11-25T22:45:39,094 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2020-11-25T22:45:39,101 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-11-25T22:45:39,104 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-11-25T22:45:39,111 creating build/lib/sequana/rules/codecs/gz_to_fastq 2020-11-25T22:45:39,114 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2020-11-25T22:45:39,121 creating build/lib/sequana/rules/codecs/bam_to_fasta 2020-11-25T22:45:39,124 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2020-11-25T22:45:39,131 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-11-25T22:45:39,134 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-11-25T22:45:39,141 creating build/lib/sequana/rules/codecs/bz2_to_gz 2020-11-25T22:45:39,143 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2020-11-25T22:45:39,151 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2020-11-25T22:45:39,153 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2020-11-25T22:45:39,160 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2020-11-25T22:45:39,163 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2020-11-25T22:45:39,170 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-11-25T22:45:39,173 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-11-25T22:45:39,180 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-11-25T22:45:39,183 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-11-25T22:45:39,190 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2020-11-25T22:45:39,193 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2020-11-25T22:45:39,200 creating build/lib/sequana/rules/codecs/fastq_to_gz 2020-11-25T22:45:39,203 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2020-11-25T22:45:39,211 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-11-25T22:45:39,213 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-11-25T22:45:39,221 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2020-11-25T22:45:39,223 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2020-11-25T22:45:39,231 creating build/lib/sequana/rules/codecs/gz_to_bz2 2020-11-25T22:45:39,233 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2020-11-25T22:45:39,241 creating build/lib/sequana/rules/SnpEff/snpeff 2020-11-25T22:45:39,243 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-11-25T22:45:39,246 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-11-25T22:45:39,253 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-11-25T22:45:39,256 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-11-25T22:45:39,264 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-11-25T22:45:39,265 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-25T22:45:39,268 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-25T22:45:39,276 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-25T22:45:39,278 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-25T22:45:39,286 creating build/lib/sequana/rules/Taxonomy/kraken 2020-11-25T22:45:39,287 creating build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-11-25T22:45:39,290 copying sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-11-25T22:45:39,298 creating build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-11-25T22:45:39,301 copying sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-11-25T22:45:39,308 creating build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,311 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,320 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,327 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,334 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,341 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,348 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,355 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2020-11-25T22:45:39,362 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2020-11-25T22:45:39,369 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2020-11-25T22:45:39,378 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2020-11-25T22:45:39,386 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2020-11-25T22:45:39,400 copying sequana/resources/data/measles.fa.fai -> build/lib/sequana/resources/data 2020-11-25T22:45:39,407 copying sequana/resources/data/phiX174.fa.pac -> build/lib/sequana/resources/data 2020-11-25T22:45:39,414 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2020-11-25T22:45:39,424 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2020-11-25T22:45:39,476 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2020-11-25T22:45:39,520 copying sequana/resources/data/phiX174.fa.amb -> build/lib/sequana/resources/data 2020-11-25T22:45:39,528 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2020-11-25T22:45:39,539 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2020-11-25T22:45:39,546 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-25T22:45:39,991 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-25T22:45:40,011 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2020-11-25T22:45:40,018 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-25T22:45:40,036 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2020-11-25T22:45:40,048 copying sequana/resources/data/phiX174.fa.bwt -> build/lib/sequana/resources/data 2020-11-25T22:45:40,056 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2020-11-25T22:45:40,063 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2020-11-25T22:45:40,069 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2020-11-25T22:45:40,076 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-25T22:45:40,530 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2020-11-25T22:45:40,537 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2020-11-25T22:45:40,543 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2020-11-25T22:45:40,550 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2020-11-25T22:45:40,559 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-25T22:45:40,578 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2020-11-25T22:45:40,633 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2020-11-25T22:45:40,669 copying sequana/resources/data/phiX174.fa.ann -> build/lib/sequana/resources/data 2020-11-25T22:45:40,674 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2020-11-25T22:45:40,757 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2020-11-25T22:45:40,767 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2020-11-25T22:45:40,774 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2020-11-25T22:45:40,784 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2020-11-25T22:45:40,791 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-11-25T22:45:40,809 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2020-11-25T22:45:40,837 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2020-11-25T22:45:40,846 copying sequana/resources/data/phiX174.fa.sa -> build/lib/sequana/resources/data 2020-11-25T22:45:40,853 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2020-11-25T22:45:40,860 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,870 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,880 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,887 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,894 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,908 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,937 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,951 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,956 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,963 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:40,979 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2020-11-25T22:45:41,010 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:41,018 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2020-11-25T22:45:41,033 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2020-11-25T22:45:41,038 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2020-11-25T22:45:41,043 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2020-11-25T22:45:41,050 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2020-11-25T22:45:41,057 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2020-11-25T22:45:41,065 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2020-11-25T22:45:41,071 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2020-11-25T22:45:41,077 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2020-11-25T22:45:41,083 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2020-11-25T22:45:41,102 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2020-11-25T22:45:41,108 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2020-11-25T22:45:41,118 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2020-11-25T22:45:41,124 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2020-11-25T22:45:41,130 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2020-11-25T22:45:41,135 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,140 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,146 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,155 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,161 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,168 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,173 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,178 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,183 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,187 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,203 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,211 copying sequana/resources/testing/test_measles.bam.bai -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,216 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,220 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,225 copying sequana/resources/testing/testxxx.sam -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,243 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,248 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,261 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,269 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,274 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,283 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,289 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,302 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,310 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,315 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,332 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,339 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,347 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,359 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,364 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,369 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,399 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,412 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,454 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,474 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,480 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,493 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,497 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,503 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,511 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,516 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,523 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,530 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,538 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,546 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,551 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,564 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,577 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,589 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,596 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,603 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,610 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,615 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,622 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,626 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,631 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,699 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,719 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,755 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,766 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,778 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,783 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,788 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,794 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,834 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,841 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,847 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,853 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,862 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,870 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,878 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,885 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,900 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,906 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,914 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,957 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,964 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,971 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,978 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,985 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,992 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-11-25T22:45:41,998 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,015 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,020 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,026 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,033 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,039 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,046 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,051 copying sequana/resources/testing/test.fasta.fai -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,056 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,062 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,086 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,093 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,099 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,104 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,110 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,117 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,123 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2020-11-25T22:45:42,129 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,135 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,140 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,146 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,154 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,162 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,168 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,173 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,179 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,185 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,192 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,198 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,205 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,211 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,216 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,221 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,227 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,234 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,241 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,248 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,256 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,264 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,271 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,276 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,281 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,286 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,292 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,300 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,307 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,313 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,318 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-11-25T22:45:42,324 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-11-25T22:45:42,325 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-25T22:45:42,327 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-25T22:45:42,337 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-25T22:45:42,346 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-11-25T22:45:42,347 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-25T22:45:42,350 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-25T22:45:44,004 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-25T22:45:44,568 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-11-25T22:45:44,569 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-25T22:45:44,572 copying sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-25T22:45:44,654 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-11-25T22:45:44,656 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-25T22:45:44,659 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-25T22:45:44,854 installing to build/bdist.linux-armv7l/wheel 2020-11-25T22:45:44,854 running install 2020-11-25T22:45:44,856 running install_lib 2020-11-25T22:45:44,864 creating build/bdist.linux-armv7l 2020-11-25T22:45:44,865 creating build/bdist.linux-armv7l/wheel 2020-11-25T22:45:44,872 creating build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:44,874 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:44,881 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,883 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,891 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,898 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,904 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,909 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,916 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,921 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,926 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,933 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,941 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,946 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,951 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,957 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,962 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-11-25T22:45:44,970 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:44,972 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:44,978 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:44,983 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:44,988 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:44,992 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:44,996 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:45,002 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:45,008 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:45,015 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:45,022 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:45,028 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:45,033 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-11-25T22:45:45,039 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,044 copying build/lib/sequana/annotations.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,049 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,057 creating build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,060 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,066 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,071 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,076 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,080 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,085 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,092 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,098 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,104 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,109 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,114 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,118 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,123 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,128 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,135 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,141 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,147 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,155 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-11-25T22:45:45,162 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,168 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,173 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,178 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,187 creating build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-25T22:45:45,189 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-25T22:45:45,197 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-25T22:45:45,202 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-25T22:45:45,209 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-11-25T22:45:45,213 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,218 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,223 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,236 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,245 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,253 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,259 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,267 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,274 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,284 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,297 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,305 copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,313 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,319 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,328 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,336 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,342 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,346 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,350 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,360 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,367 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,373 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,381 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,387 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:45,398 creating build/bdist.linux-armv7l/wheel/sequana/rules 2020-11-25T22:45:45,402 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-11-25T22:45:45,405 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-11-25T22:45:45,414 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-11-25T22:45:45,416 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-11-25T22:45:45,424 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-11-25T22:45:45,426 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-11-25T22:45:45,434 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-11-25T22:45:45,438 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-11-25T22:45:45,441 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-11-25T22:45:45,449 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2020-11-25T22:45:45,453 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-11-25T22:45:45,456 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-11-25T22:45:45,464 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-11-25T22:45:45,467 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-11-25T22:45:45,473 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-11-25T22:45:45,480 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-11-25T22:45:45,482 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-11-25T22:45:45,490 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-11-25T22:45:45,494 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-25T22:45:45,497 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-11-25T22:45:45,505 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-25T22:45:45,508 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-11-25T22:45:45,516 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-11-25T22:45:45,518 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-11-25T22:45:45,526 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-11-25T22:45:45,529 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-11-25T22:45:45,537 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-11-25T22:45:45,539 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-11-25T22:45:45,547 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-11-25T22:45:45,550 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-11-25T22:45:45,558 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-11-25T22:45:45,560 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-11-25T22:45:45,568 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-11-25T22:45:45,571 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-11-25T22:45:45,579 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-11-25T22:45:45,581 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-11-25T22:45:45,589 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-11-25T22:45:45,592 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-11-25T22:45:45,600 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-11-25T22:45:45,602 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-11-25T22:45:45,610 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-11-25T22:45:45,613 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-11-25T22:45:45,621 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-11-25T22:45:45,623 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-11-25T22:45:45,631 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-11-25T22:45:45,634 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-11-25T22:45:45,642 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-11-25T22:45:45,644 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-11-25T22:45:45,652 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2020-11-25T22:45:45,656 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-11-25T22:45:45,659 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-11-25T22:45:45,667 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-11-25T22:45:45,670 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-11-25T22:45:45,678 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-11-25T22:45:45,680 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-11-25T22:45:45,688 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-11-25T22:45:45,691 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-11-25T22:45:45,698 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2020-11-25T22:45:45,700 copying build/lib/sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2020-11-25T22:45:45,708 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-11-25T22:45:45,711 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-11-25T22:45:45,840 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-11-25T22:45:45,842 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-11-25T22:45:45,850 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-11-25T22:45:45,853 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-11-25T22:45:45,860 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-11-25T22:45:45,863 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-11-25T22:45:45,870 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-11-25T22:45:45,876 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-11-25T22:45:45,879 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-11-25T22:45:45,886 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-11-25T22:45:45,889 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-11-25T22:45:45,897 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-11-25T22:45:45,901 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-11-25T22:45:45,904 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-11-25T22:45:45,911 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-11-25T22:45:45,917 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-11-25T22:45:45,920 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-11-25T22:45:45,928 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-25T22:45:45,930 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-11-25T22:45:45,936 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-11-25T22:45:45,938 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-11-25T22:45:45,944 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-11-25T22:45:45,946 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-11-25T22:45:45,953 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-11-25T22:45:45,956 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-11-25T22:45:45,964 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-11-25T22:45:45,966 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-11-25T22:45:45,975 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-11-25T22:45:45,977 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-11-25T22:45:45,986 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-11-25T22:45:45,988 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-11-25T22:45:45,996 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-11-25T22:45:45,999 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-11-25T22:45:46,007 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-11-25T22:45:46,009 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-11-25T22:45:46,017 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-11-25T22:45:46,020 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-11-25T22:45:46,028 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-11-25T22:45:46,031 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-11-25T22:45:46,038 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-11-25T22:45:46,041 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-11-25T22:45:46,050 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-11-25T22:45:46,053 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-11-25T22:45:46,061 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-11-25T22:45:46,064 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-11-25T22:45:46,072 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-11-25T22:45:46,074 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-11-25T22:45:46,083 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-11-25T22:45:46,087 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-11-25T22:45:46,090 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-11-25T22:45:46,098 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-11-25T22:45:46,101 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-11-25T22:45:46,109 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-11-25T22:45:46,111 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-11-25T22:45:46,119 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-11-25T22:45:46,122 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-11-25T22:45:46,128 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-11-25T22:45:46,135 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-11-25T22:45:46,137 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-11-25T22:45:46,146 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-11-25T22:45:46,148 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-11-25T22:45:46,158 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-11-25T22:45:46,160 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-11-25T22:45:46,169 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-11-25T22:45:46,171 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-11-25T22:45:46,178 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-11-25T22:45:46,181 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken 2020-11-25T22:45:46,185 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-11-25T22:45:46,187 copying build/lib/sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-11-25T22:45:46,194 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-11-25T22:45:46,197 copying build/lib/sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-11-25T22:45:46,204 copying build/lib/sequana/rules/Taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-11-25T22:45:46,211 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-11-25T22:45:46,214 copying build/lib/sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-11-25T22:45:46,220 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-11-25T22:45:46,222 copying build/lib/sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-11-25T22:45:46,229 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-11-25T22:45:46,232 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-11-25T22:45:46,235 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-11-25T22:45:46,243 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-25T22:45:46,246 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-11-25T22:45:46,254 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-25T22:45:46,256 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-11-25T22:45:46,261 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-11-25T22:45:46,266 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-11-25T22:45:46,268 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-11-25T22:45:46,275 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-25T22:45:46,278 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-11-25T22:45:46,286 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-11-25T22:45:46,289 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-11-25T22:45:46,297 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-11-25T22:45:46,300 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-11-25T22:45:46,302 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-11-25T22:45:46,308 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-11-25T22:45:46,310 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-11-25T22:45:46,317 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-11-25T22:45:46,320 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-11-25T22:45:46,327 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-11-25T22:45:46,333 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-11-25T22:45:46,336 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-11-25T22:45:46,342 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-11-25T22:45:46,344 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-11-25T22:45:46,351 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-11-25T22:45:46,354 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-11-25T22:45:46,356 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-11-25T22:45:46,363 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-11-25T22:45:46,369 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-25T22:45:46,372 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-11-25T22:45:46,380 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-25T22:45:46,382 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-11-25T22:45:46,388 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-11-25T22:45:46,390 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-11-25T22:45:46,396 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-25T22:45:46,399 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-11-25T22:45:46,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-11-25T22:45:46,409 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-11-25T22:45:46,416 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-11-25T22:45:46,423 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-11-25T22:45:46,428 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-11-25T22:45:46,431 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-11-25T22:45:46,437 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-11-25T22:45:46,443 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-11-25T22:45:46,446 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-11-25T22:45:46,455 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-11-25T22:45:46,457 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-11-25T22:45:46,465 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-11-25T22:45:46,468 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-11-25T22:45:46,476 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-11-25T22:45:46,478 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-11-25T22:45:46,486 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-11-25T22:45:46,490 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-11-25T22:45:46,494 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-11-25T22:45:46,500 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-11-25T22:45:46,506 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-11-25T22:45:46,509 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-11-25T22:45:46,516 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-11-25T22:45:46,519 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-11-25T22:45:46,527 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-11-25T22:45:46,529 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-11-25T22:45:46,537 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-11-25T22:45:46,539 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-11-25T22:45:46,547 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-11-25T22:45:46,549 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-11-25T22:45:46,557 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-11-25T22:45:46,560 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-11-25T22:45:46,567 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-11-25T22:45:46,570 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-11-25T22:45:46,577 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-11-25T22:45:46,579 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-11-25T22:45:46,587 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-11-25T22:45:46,589 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-11-25T22:45:46,597 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-11-25T22:45:46,600 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-11-25T22:45:46,607 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-11-25T22:45:46,611 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-11-25T22:45:46,614 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-11-25T22:45:46,622 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-11-25T22:45:46,625 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-11-25T22:45:46,632 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-11-25T22:45:46,635 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-11-25T22:45:46,642 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-11-25T22:45:46,645 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-11-25T22:45:46,652 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-11-25T22:45:46,655 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-11-25T22:45:46,663 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-11-25T22:45:46,665 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-11-25T22:45:46,671 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-11-25T22:45:46,678 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-11-25T22:45:46,680 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-11-25T22:45:46,688 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-11-25T22:45:46,691 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-11-25T22:45:46,699 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-11-25T22:45:46,701 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-11-25T22:45:46,709 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-11-25T22:45:46,712 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-11-25T22:45:46,720 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-11-25T22:45:46,722 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-11-25T22:45:46,730 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-11-25T22:45:46,733 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-11-25T22:45:46,740 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-11-25T22:45:46,743 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-11-25T22:45:46,751 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-11-25T22:45:46,753 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-11-25T22:45:46,761 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-11-25T22:45:46,764 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-11-25T22:45:46,771 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-11-25T22:45:46,774 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-11-25T22:45:46,782 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-11-25T22:45:46,785 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-11-25T22:45:46,791 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,797 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,808 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,814 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,819 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,825 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,832 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,838 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,846 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,852 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,859 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,865 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,872 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,885 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,898 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,904 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,911 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,918 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,925 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,932 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:46,940 creating build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,943 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,948 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,959 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,966 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,972 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,978 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,983 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,989 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,993 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:46,998 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:47,003 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:47,010 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:47,016 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:47,023 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:47,029 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:47,039 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-11-25T22:45:47,043 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,048 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,056 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,063 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,071 creating build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-25T22:45:47,074 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-25T22:45:47,081 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-25T22:45:47,086 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-11-25T22:45:47,091 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,097 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,102 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,108 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:47,122 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,125 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,131 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,136 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,143 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,148 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,155 copying build/lib/sequana/modules_report/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,163 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,169 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,175 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,180 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,184 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,188 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,193 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,199 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,203 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,208 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,214 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,222 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-11-25T22:45:47,227 creating build/bdist.linux-armv7l/wheel/sequana/resources 2020-11-25T22:45:47,233 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,236 copying build/lib/sequana/resources/data/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,242 copying build/lib/sequana/resources/data/phiX174.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,248 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,258 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,309 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,348 copying build/lib/sequana/resources/data/phiX174.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,353 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,361 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,367 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,810 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,827 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,835 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:47,844 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,846 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,852 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,856 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,863 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,870 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,877 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,881 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,886 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,891 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,896 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,902 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,908 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,914 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,919 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,924 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,930 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,933 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,937 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,944 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,949 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,956 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,963 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,970 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,976 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,982 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,988 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:47,995 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:48,000 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:48,007 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:48,014 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:48,020 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:48,026 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-11-25T22:45:48,032 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,049 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,061 copying build/lib/sequana/resources/data/phiX174.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,068 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,075 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,080 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,087 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,537 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,543 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,548 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,554 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,561 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,569 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,575 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,593 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,607 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,661 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,695 copying build/lib/sequana/resources/data/phiX174.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,699 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,782 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,790 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,796 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,802 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,811 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,816 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,832 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,860 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,867 copying build/lib/sequana/resources/data/phiX174.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,871 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-11-25T22:45:48,879 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,882 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,893 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,901 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,907 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,913 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,928 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,958 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,961 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,974 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,980 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:48,988 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:49,002 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:49,031 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:49,038 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-11-25T22:45:49,055 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-25T22:45:49,058 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-25T22:45:49,064 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-25T22:45:49,070 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-25T22:45:49,075 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-25T22:45:49,080 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-11-25T22:45:49,086 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-11-25T22:45:49,088 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-11-25T22:45:49,095 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-11-25T22:45:49,100 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2020-11-25T22:45:49,106 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-11-25T22:45:49,109 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-11-25T22:45:49,115 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-11-25T22:45:49,121 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-25T22:45:49,123 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-25T22:45:49,129 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-25T22:45:49,135 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-25T22:45:49,139 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-25T22:45:49,146 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-25T22:45:49,164 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-11-25T22:45:49,170 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-25T22:45:49,173 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-25T22:45:49,184 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-25T22:45:49,190 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-25T22:45:49,199 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-11-25T22:45:49,206 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-11-25T22:45:49,209 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-11-25T22:45:49,214 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-11-25T22:45:49,226 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,230 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,238 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,252 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,258 copying build/lib/sequana/resources/testing/test_measles.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,263 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,269 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,275 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,280 copying build/lib/sequana/resources/testing/testxxx.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,299 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,304 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,316 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,323 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,329 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,339 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,346 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,354 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,361 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,367 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,385 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,390 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,398 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,404 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,416 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,422 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,428 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,461 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,476 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,516 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,535 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,542 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,557 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,561 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,568 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:49,578 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-11-25T22:45:49,583 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-11-25T22:45:49,587 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-25T22:45:49,591 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-25T22:45:49,600 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-11-25T22:45:49,610 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-11-25T22:45:49,614 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-25T22:45:49,617 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-25T22:45:51,277 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-11-25T22:45:51,846 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-11-25T22:45:51,853 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-11-25T22:45:51,857 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-25T22:45:51,860 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-11-25T22:45:51,943 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-11-25T22:45:51,947 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-25T22:45:51,951 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-11-25T22:45:52,050 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,057 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,061 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,066 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,071 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,075 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,084 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,092 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,098 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,113 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,126 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,137 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,144 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,151 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,160 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,165 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,173 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,179 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,185 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,255 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,276 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,313 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,324 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,333 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,337 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,341 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,346 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,350 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,354 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,394 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,400 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,407 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,414 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,422 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,428 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,433 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,439 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,454 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,462 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,471 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,514 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,521 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,529 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,536 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,542 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,548 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,553 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,570 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,576 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,582 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,588 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,595 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,601 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,608 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,613 copying build/lib/sequana/resources/testing/test.fasta.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,619 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,625 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,648 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,656 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,662 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,668 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,674 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,680 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,684 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,689 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,693 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-11-25T22:45:52,698 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,707 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-25T22:45:52,709 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-25T22:45:52,716 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-25T22:45:52,721 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-11-25T22:45:52,727 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-11-25T22:45:52,729 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-11-25T22:45:52,734 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,736 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,743 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,749 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,754 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,760 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,765 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,769 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-11-25T22:45:52,774 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,783 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,791 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,798 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,805 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,815 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,820 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,827 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,833 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2020-11-25T22:45:52,839 running install_egg_info 2020-11-25T22:45:52,889 running egg_info 2020-11-25T22:45:52,890 writing top-level names to sequana.egg-info/top_level.txt 2020-11-25T22:45:52,893 writing requirements to sequana.egg-info/requires.txt 2020-11-25T22:45:52,896 writing sequana.egg-info/PKG-INFO 2020-11-25T22:45:52,902 writing entry points to sequana.egg-info/entry_points.txt 2020-11-25T22:45:52,906 writing dependency_links to sequana.egg-info/dependency_links.txt 2020-11-25T22:45:53,168 reading manifest file 'sequana.egg-info/SOURCES.txt' 2020-11-25T22:45:53,208 reading manifest template 'MANIFEST.in' 2020-11-25T22:45:53,218 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-11-25T22:45:53,225 warning: no previously-included files matching '*pyc' found under directory '*' 2020-11-25T22:45:55,914 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-11-25T22:45:55,919 warning: no previously-included files matching '*' found under directory 'test' 2020-11-25T22:45:55,925 warning: no previously-included files found matching 'sequana/rm2.py' 2020-11-25T22:45:56,014 writing manifest file 'sequana.egg-info/SOURCES.txt' 2020-11-25T22:45:56,020 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.9.4-py3.5.egg-info 2020-11-25T22:45:56,065 running install_scripts 2020-11-25T22:45:56,378 creating build/bdist.linux-armv7l/wheel/sequana-0.9.4.dist-info/WHEEL 2020-11-25T22:46:14,972 Building wheel for sequana (setup.py): finished with status 'done' 2020-11-25T22:46:15,329 Created wheel for sequana: filename=sequana-0.9.4-py3-none-any.whl size=21366606 sha256=178e6af188bbfa96b5e54a4f0d33b5c5ba607e74cbc67cf85a8aa588e629502c 2020-11-25T22:46:15,330 Stored in directory: /tmp/pip-ephem-wheel-cache-q0rd6w93/wheels/aa/f8/bd/2810bdbe5a3599ef2040acda1879eaee032d34690dfa703d2a 2020-11-25T22:46:15,334 Successfully built sequana 2020-11-25T22:46:19,151 Removed build tracker: '/tmp/pip-req-tracker-y62ge1vy'