2020-11-26T23:24:34,212 Created temporary directory: /tmp/pip-ephem-wheel-cache-_9r3thj1
2020-11-26T23:24:34,214 Created temporary directory: /tmp/pip-req-tracker-xxat2ok9
2020-11-26T23:24:34,215 Initialized build tracking at /tmp/pip-req-tracker-xxat2ok9
2020-11-26T23:24:34,215 Created build tracker: /tmp/pip-req-tracker-xxat2ok9
2020-11-26T23:24:34,215 Entered build tracker: /tmp/pip-req-tracker-xxat2ok9
2020-11-26T23:24:34,216 Created temporary directory: /tmp/pip-wheel-ecofr3bs
2020-11-26T23:24:34,227 1 location(s) to search for versions of megalodon:
2020-11-26T23:24:34,227 * https://pypi.org/simple/megalodon/
2020-11-26T23:24:34,227 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/
2020-11-26T23:24:34,228 Getting page https://pypi.org/simple/megalodon/
2020-11-26T23:24:34,229 Found index url https://pypi.org/simple
2020-11-26T23:24:34,336   Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_14_x86_64: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,337   Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0
2020-11-26T23:24:34,337   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,337   Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0
2020-11-26T23:24:34,338   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,338   Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0
2020-11-26T23:24:34,339   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,339   Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0
2020-11-26T23:24:34,339   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,339   Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1
2020-11-26T23:24:34,340   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/23/94/863df7fd77e1944284db39b53c3cc1f70e0f8fcbf6986d2a88e6f4d580e8/megalodon-2.2.2-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=0d097cc1fef40f8687647b5b2762567b845af016da396720bdd831e205ee8a17 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,340   Found link https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b (from https://pypi.org/simple/megalodon/), version: 2.2.2
2020-11-26T23:24:34,341   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/45/a6/2823df05db649df59c68dd45cf096fbfbfc329ef1d0f7ebec4f8d9f22aba/megalodon-2.2.3-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=5d0a7ac3aa6682e765b65ccf21287f19adb13136c5bbf1df2261d3977ae8477d (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,341   Found link https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz#sha256=15da8761287df96251e08960fbf4bb1d1f2acc35ed8f824923845db78e3e1d90 (from https://pypi.org/simple/megalodon/), version: 2.2.3
2020-11-26T23:24:34,341   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/68/ae/04258dc7767930aa202d1bde4b85ab85d7198e309aeac9dd87022622feb2/megalodon-2.2.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bc8f2941db875a09c831c8f9430fbef8192827ace981eb64f7dd28d3a9ee6351 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,341   Found link https://files.pythonhosted.org/packages/f2/1a/4cbec97bcedb05c100398b752bccc14078a7bb7d72e4c3dd9adf96280818/megalodon-2.2.4.tar.gz#sha256=a882b2a388c82fdcc150de46f9dc10d5253afe7e44e419896ac1c5783b50531c (from https://pypi.org/simple/megalodon/), version: 2.2.4
2020-11-26T23:24:34,342   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/19/dd/f9468b176d7205983acd0815d8e5c8c261befeac8ada2b56b1ecb993bb68/megalodon-2.2.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d5997afe79945d93c64b6d7c9e43abec8e8ea6855b46d9310e591d6b80c1a1b4 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,342   Found link https://files.pythonhosted.org/packages/16/ae/a874438ab41e90ab0cef6dd27dacfdafde85d1e53919d16a6cf7179db5a0/megalodon-2.2.5.tar.gz#sha256=2e1d518defaabc15a1e95ace2738823cee1d6394066b4208527bb4d75bcf624a (from https://pypi.org/simple/megalodon/), version: 2.2.5
2020-11-26T23:24:34,343   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/a5/62/9b0b3ea25b343f382552662ebfe57635b614f8a2377ffd5023c211936cc1/megalodon-2.2.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=b6c509cd7e3cdf1577a133d1341b21be7ca2532da296b4be037c430f99244357 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,343   Found link https://files.pythonhosted.org/packages/e5/b2/d811ca419757cbba76ddc27bfa2d6737697ff84154452b854ed45bff00cd/megalodon-2.2.6.tar.gz#sha256=771c3a3c75ed77e5ff992ee351d7ae1b9098a9f9b0d5fd802a0dc3a917ebc309 (from https://pypi.org/simple/megalodon/), version: 2.2.6
2020-11-26T23:24:34,343   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/c9/b4/f5d093c9af006cf796dabdbc11c1e35d948f0614ded7d2287c59edf176f5/megalodon-2.2.7-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=39e7f53cf7edc33b9db185ad25d710fbb146f376c9b2a18e040532f3eabf6d22 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,343   Found link https://files.pythonhosted.org/packages/8f/3a/0dddaefaafd13b422c47b29b6eb8244e063cf1913a6c93bb266f81ba28b0/megalodon-2.2.7.tar.gz#sha256=1b94f36b0832e46a357fdeaa1dd69ba8fcc12db323fec92fc82099bec561e953 (from https://pypi.org/simple/megalodon/), version: 2.2.7
2020-11-26T23:24:34,344   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/1c/e2/aac960ece82b3ee2d1bf508bbad89b0322df7ee93867bff61eb08eea7d02/megalodon-2.2.8-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=4476551ac0b3e26f30ffc672b968364a20c70ddcde7aaecf1c35b774c0cb89f8 (from https://pypi.org/simple/megalodon/)
2020-11-26T23:24:34,344   Found link https://files.pythonhosted.org/packages/96/ff/fbca07072116bded97faa95b3e612e51699f0f2b0f6bf3f8ceb4d517eb13/megalodon-2.2.8.tar.gz#sha256=19c1cfe3b538f426f7f0a3174350ab9670e7c6e9b7ed2a2567123663349300b1 (from https://pypi.org/simple/megalodon/), version: 2.2.8
2020-11-26T23:24:34,347 Given no hashes to check 1 links for project 'megalodon': discarding no candidates
2020-11-26T23:24:34,347 Using version 2.2.8 (newest of versions: 2.2.8)
2020-11-26T23:24:34,351 Collecting megalodon==2.2.8
2020-11-26T23:24:34,353   Created temporary directory: /tmp/pip-unpack-ghj6pooc
2020-11-26T23:24:34,410   Downloading megalodon-2.2.8.tar.gz (8.0 MB)
2020-11-26T23:24:36,185   Added megalodon==2.2.8 from https://files.pythonhosted.org/packages/96/ff/fbca07072116bded97faa95b3e612e51699f0f2b0f6bf3f8ceb4d517eb13/megalodon-2.2.8.tar.gz#sha256=19c1cfe3b538f426f7f0a3174350ab9670e7c6e9b7ed2a2567123663349300b1 to build tracker '/tmp/pip-req-tracker-xxat2ok9'
2020-11-26T23:24:36,186     Running setup.py (path:/tmp/pip-wheel-ecofr3bs/megalodon/setup.py) egg_info for package megalodon
2020-11-26T23:24:36,187     Created temporary directory: /tmp/pip-pip-egg-info-_06azqbp
2020-11-26T23:24:36,187     Running command python setup.py egg_info
2020-11-26T23:24:37,447     running egg_info
2020-11-26T23:24:37,449     creating /tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info
2020-11-26T23:24:37,450     writing /tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/PKG-INFO
2020-11-26T23:24:37,453     writing dependency_links to /tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/dependency_links.txt
2020-11-26T23:24:37,455     writing entry points to /tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/entry_points.txt
2020-11-26T23:24:37,457     writing requirements to /tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/requires.txt
2020-11-26T23:24:37,458     writing top-level names to /tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/top_level.txt
2020-11-26T23:24:37,460     writing manifest file '/tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/SOURCES.txt'
2020-11-26T23:24:37,840     reading manifest file '/tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/SOURCES.txt'
2020-11-26T23:24:37,842     reading manifest template 'MANIFEST.in'
2020-11-26T23:24:37,849     writing manifest file '/tmp/pip-pip-egg-info-_06azqbp/megalodon.egg-info/SOURCES.txt'
2020-11-26T23:24:37,949   Source in /tmp/pip-wheel-ecofr3bs/megalodon has version 2.2.8, which satisfies requirement megalodon==2.2.8 from https://files.pythonhosted.org/packages/96/ff/fbca07072116bded97faa95b3e612e51699f0f2b0f6bf3f8ceb4d517eb13/megalodon-2.2.8.tar.gz#sha256=19c1cfe3b538f426f7f0a3174350ab9670e7c6e9b7ed2a2567123663349300b1
2020-11-26T23:24:37,950   Removed megalodon==2.2.8 from https://files.pythonhosted.org/packages/96/ff/fbca07072116bded97faa95b3e612e51699f0f2b0f6bf3f8ceb4d517eb13/megalodon-2.2.8.tar.gz#sha256=19c1cfe3b538f426f7f0a3174350ab9670e7c6e9b7ed2a2567123663349300b1 from build tracker '/tmp/pip-req-tracker-xxat2ok9'
2020-11-26T23:24:37,953 Building wheels for collected packages: megalodon
2020-11-26T23:24:37,958   Created temporary directory: /tmp/pip-wheel-bv095br6
2020-11-26T23:24:37,958   Building wheel for megalodon (setup.py): started
2020-11-26T23:24:37,959   Destination directory: /tmp/pip-wheel-bv095br6
2020-11-26T23:24:37,959   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ecofr3bs/megalodon/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ecofr3bs/megalodon/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bv095br6
2020-11-26T23:24:39,160   running bdist_wheel
2020-11-26T23:24:39,166   running build
2020-11-26T23:24:39,166   running build_py
2020-11-26T23:24:39,292   creating build
2020-11-26T23:24:39,292   creating build/lib.linux-armv7l-3.7
2020-11-26T23:24:39,293   creating build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,294   copying megalodon/variants.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,298   copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,300   copying megalodon/mods.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,304   copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,305   copying megalodon/__init__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,307   copying megalodon/__main__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,310   copying megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,312   copying megalodon/backends.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,316   copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,319   copying megalodon/logging.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,321   copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,325   copying megalodon/_version.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,327   copying megalodon/calibration.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,330   copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,332   copying megalodon/mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-11-26T23:24:39,338   creating build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,339   copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,341   copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,344   copying megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,346   copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,349   copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,351   copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,353   copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,356   copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,359   copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,361   copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,363   copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,366   copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,368   copying megalodon_extras/modified_bases_create_motif_bed.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,370   copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,373   copying megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,375   copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,379   copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,381   copying megalodon_extras/merge_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,384   copying megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,386   copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,388   copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,390   copying megalodon_extras/modified_bases_per_site_thresholds.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,393   copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,395   copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,397   copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,400   copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,402   copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,406   copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,408   copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,410   copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,413   copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,415   copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-11-26T23:24:39,434   creating build/lib.linux-armv7l-3.7/megalodon/model_data
2020-11-26T23:24:39,434   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-11-26T23:24:39,436   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-11-26T23:24:39,444   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-11-26T23:24:39,474   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-11-26T23:24:39,475   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-11-26T23:24:39,483   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-11-26T23:24:39,510   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:39,511   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:39,520   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:39,526   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:39,556   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:39,564   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:39,565   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:39,573   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:39,577   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:39,610   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:39,618   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:39,619   copying megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:39,623   copying megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:39,627   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:39,627   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:39,636   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:39,642   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:39,677   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:39,684   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-11-26T23:24:39,685   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-11-26T23:24:39,689   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-11-26T23:24:39,692   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-11-26T23:24:39,693   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-11-26T23:24:39,703   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-11-26T23:24:39,737   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-11-26T23:24:39,738   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-11-26T23:24:39,745   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-11-26T23:24:39,774   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:39,775   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:39,784   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:39,787   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:39,816   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:39,820   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-11-26T23:24:39,821   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-11-26T23:24:39,828   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-11-26T23:24:39,859   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:39,860   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:39,869   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:39,874   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:39,908   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:39,912   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-11-26T23:24:39,913   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-11-26T23:24:39,922   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-11-26T23:24:39,960   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-11-26T23:24:39,962   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-11-26T23:24:39,971   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-11-26T23:24:39,999   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-11-26T23:24:40,001   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-11-26T23:24:40,009   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-11-26T23:24:40,037   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:40,038   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:40,042   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:40,046   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:40,047   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:40,055   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:40,059   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:40,088   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:40,094   running build_ext
2020-11-26T23:24:40,297   cythoning megalodon/_decode.pyx to megalodon/_decode.c
2020-11-26T23:24:42,546   building 'megalodon.decode' extension
2020-11-26T23:24:42,547   creating build/temp.linux-armv7l-3.7
2020-11-26T23:24:42,548   creating build/temp.linux-armv7l-3.7/megalodon
2020-11-26T23:24:42,549   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c megalodon/_decode.c -o build/temp.linux-armv7l-3.7/megalodon/_decode.o -std=c99
2020-11-26T23:24:42,938   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-11-26T23:24:42,938                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-11-26T23:24:42,939                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-11-26T23:24:42,939                    from megalodon/_decode.c:612:
2020-11-26T23:24:42,939   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-11-26T23:24:42,939    #warning "Using deprecated NumPy API, disable it with " \
2020-11-26T23:24:42,940     ^~~~~~~
2020-11-26T23:24:52,875   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/megalodon/_decode.o -o build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so
2020-11-26T23:24:53,042   installing to build/bdist.linux-armv7l/wheel
2020-11-26T23:24:53,042   running install
2020-11-26T23:24:53,044   running install_lib
2020-11-26T23:24:53,049   creating build/bdist.linux-armv7l
2020-11-26T23:24:53,050   creating build/bdist.linux-armv7l/wheel
2020-11-26T23:24:53,053   creating build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,054   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,058   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,060   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,063   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,066   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,069   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,072   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,076   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,079   copying build/lib.linux-armv7l-3.7/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,081   copying build/lib.linux-armv7l-3.7/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,084   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,088   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,091   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_motif_bed.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,094   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,097   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,099   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,103   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,106   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,108   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,111   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,114   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,116   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_per_site_thresholds.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,120   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,122   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,125   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,128   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,131   copying build/lib.linux-armv7l-3.7/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,135   copying build/lib.linux-armv7l-3.7/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,137   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,140   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,142   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,145   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-11-26T23:24:53,149   creating build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,150   copying build/lib.linux-armv7l-3.7/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,155   copying build/lib.linux-armv7l-3.7/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,159   copying build/lib.linux-armv7l-3.7/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,164   copying build/lib.linux-armv7l-3.7/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,167   copying build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,182   copying build/lib.linux-armv7l-3.7/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,185   copying build/lib.linux-armv7l-3.7/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,188   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,191   copying build/lib.linux-armv7l-3.7/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,196   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,200   copying build/lib.linux-armv7l-3.7/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,202   copying build/lib.linux-armv7l-3.7/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,207   copying build/lib.linux-armv7l-3.7/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:53,210   creating build/bdist.linux-armv7l/wheel/megalodon/model_data
2020-11-26T23:24:53,212   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-11-26T23:24:53,214   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-11-26T23:24:53,223   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-11-26T23:24:53,256   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-11-26T23:24:53,258   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-11-26T23:24:53,264   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-11-26T23:24:53,290   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:53,291   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:53,300   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:53,305   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:53,334   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-11-26T23:24:53,720   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:53,723   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:53,737   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:53,743   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:53,769   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-11-26T23:24:53,777   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:53,778   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:53,782   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:53,785   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:53,786   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:53,794   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:53,799   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:53,828   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-11-26T23:24:53,836   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-11-26T23:24:53,837   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-11-26T23:24:53,841   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-11-26T23:24:53,844   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-11-26T23:24:53,845   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-11-26T23:24:53,852   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-11-26T23:24:53,880   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-11-26T23:24:53,881   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-11-26T23:24:53,888   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-11-26T23:24:53,914   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:53,915   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:53,923   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:53,926   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:53,951   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:53,954   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-11-26T23:24:53,955   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-11-26T23:24:53,964   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-11-26T23:24:53,993   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:53,994   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:54,004   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:54,009   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:54,038   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-11-26T23:24:54,042   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-11-26T23:24:54,043   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-11-26T23:24:54,051   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-11-26T23:24:54,078   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-11-26T23:24:54,079   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-11-26T23:24:54,087   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-11-26T23:24:54,113   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-11-26T23:24:54,114   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-11-26T23:24:54,122   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-11-26T23:24:54,149   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:54,150   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:54,153   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-11-26T23:24:54,158   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:54,158   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:54,169   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:54,174   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:54,204   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-11-26T23:24:54,207   copying build/lib.linux-armv7l-3.7/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:54,210   copying build/lib.linux-armv7l-3.7/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:54,212   copying build/lib.linux-armv7l-3.7/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-11-26T23:24:54,215   running install_egg_info
2020-11-26T23:24:54,239   running egg_info
2020-11-26T23:24:54,239   writing megalodon.egg-info/PKG-INFO
2020-11-26T23:24:54,243   writing dependency_links to megalodon.egg-info/dependency_links.txt
2020-11-26T23:24:54,245   writing entry points to megalodon.egg-info/entry_points.txt
2020-11-26T23:24:54,247   writing requirements to megalodon.egg-info/requires.txt
2020-11-26T23:24:54,248   writing top-level names to megalodon.egg-info/top_level.txt
2020-11-26T23:24:54,276   reading manifest file 'megalodon.egg-info/SOURCES.txt'
2020-11-26T23:24:54,282   reading manifest template 'MANIFEST.in'
2020-11-26T23:24:54,292   writing manifest file 'megalodon.egg-info/SOURCES.txt'
2020-11-26T23:24:54,294   Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.2.8-py3.7.egg-info
2020-11-26T23:24:54,314   running install_scripts
2020-11-26T23:24:54,387   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2020-11-26T23:24:54,395   creating build/bdist.linux-armv7l/wheel/megalodon-2.2.8.dist-info/WHEEL
2020-11-26T23:24:54,398   creating '/tmp/pip-wheel-bv095br6/megalodon-2.2.8-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-11-26T23:24:54,401   adding 'megalodon/__init__.py'
2020-11-26T23:24:54,405   adding 'megalodon/__main__.py'
2020-11-26T23:24:54,406   adding 'megalodon/_version.py'
2020-11-26T23:24:54,409   adding 'megalodon/aggregate.py'
2020-11-26T23:24:54,417   adding 'megalodon/backends.py'
2020-11-26T23:24:54,420   adding 'megalodon/calibration.py'
2020-11-26T23:24:54,537   adding 'megalodon/decode.cpython-37m-arm-linux-gnueabihf.so'
2020-11-26T23:24:54,542   adding 'megalodon/fast5_io.py'
2020-11-26T23:24:54,544   adding 'megalodon/logging.py'
2020-11-26T23:24:54,546   adding 'megalodon/mapping.py'
2020-11-26T23:24:54,553   adding 'megalodon/megalodon.py'
2020-11-26T23:24:54,558   adding 'megalodon/megalodon_helper.py'
2020-11-26T23:24:54,560   adding 'megalodon/megalodon_multiprocessing.py'
2020-11-26T23:24:54,571   adding 'megalodon/mods.py'
2020-11-26T23:24:54,573   adding 'megalodon/signal_mapping.py'
2020-11-26T23:24:54,585   adding 'megalodon/variants.py'
2020-11-26T23:24:54,649   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:54,675   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:54,725   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:54,753   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:54,801   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:54,829   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:54,880   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:54,907   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:54,970   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:54,996   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,052   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,079   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,139   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,166   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,217   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,245   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,254   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,275   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,334   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,363   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,373   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,395   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,450   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,479   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,486   adding 'megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,489   adding 'megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,496   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,500   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,547   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,575   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,584   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,605   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,659   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,685   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,691   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,694   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,741   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,768   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,773   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,776   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,780   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,783   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,826   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz'
2020-11-26T23:24:55,854   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf'
2020-11-26T23:24:55,860   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz'
2020-11-26T23:24:55,863   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf'
2020-11-26T23:24:55,867   adding 'megalodon_extras/__init__.py'
2020-11-26T23:24:55,868   adding 'megalodon_extras/__main__.py'
2020-11-26T23:24:55,872   adding 'megalodon_extras/_extras_parsers.py'
2020-11-26T23:24:55,874   adding 'megalodon_extras/aggregate_run.py'
2020-11-26T23:24:55,875   adding 'megalodon_extras/calibrate_generate_modified_base_stats.py'
2020-11-26T23:24:55,878   adding 'megalodon_extras/calibrate_generate_variant_stats.py'
2020-11-26T23:24:55,880   adding 'megalodon_extras/calibrate_merge_modified_bases.py'
2020-11-26T23:24:55,881   adding 'megalodon_extras/calibrate_modified_bases.py'
2020-11-26T23:24:55,883   adding 'megalodon_extras/calibrate_variants.py'
2020-11-26T23:24:55,884   adding 'megalodon_extras/merge_aggregated_modified_bases.py'
2020-11-26T23:24:55,886   adding 'megalodon_extras/merge_modified_bases.py'
2020-11-26T23:24:55,887   adding 'megalodon_extras/merge_variants.py'
2020-11-26T23:24:55,889   adding 'megalodon_extras/modified_bases_create_ground_truth.py'
2020-11-26T23:24:55,890   adding 'megalodon_extras/modified_bases_create_motif_bed.py'
2020-11-26T23:24:55,891   adding 'megalodon_extras/modified_bases_describe_alphabet.py'
2020-11-26T23:24:55,892   adding 'megalodon_extras/modified_bases_estimate_threshold.py'
2020-11-26T23:24:55,893   adding 'megalodon_extras/modified_bases_index_database.py'
2020-11-26T23:24:55,895   adding 'megalodon_extras/modified_bases_per_site_thresholds.py'
2020-11-26T23:24:55,897   adding 'megalodon_extras/modified_bases_split_by_motif.py'
2020-11-26T23:24:55,898   adding 'megalodon_extras/modified_bases_update_database.py'
2020-11-26T23:24:55,900   adding 'megalodon_extras/per_read_text_modified_bases.py'
2020-11-26T23:24:55,901   adding 'megalodon_extras/per_read_text_variants.py'
2020-11-26T23:24:55,902   adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py'
2020-11-26T23:24:55,904   adding 'megalodon_extras/phase_variants_merge_haploid_variants.py'
2020-11-26T23:24:55,905   adding 'megalodon_extras/phase_variants_whatshap_filter.py'
2020-11-26T23:24:55,907   adding 'megalodon_extras/validate_aggregated_modified_bases.py'
2020-11-26T23:24:55,909   adding 'megalodon_extras/validate_compare_modified_bases.py'
2020-11-26T23:24:55,912   adding 'megalodon_extras/validate_results.py'
2020-11-26T23:24:55,914   adding 'megalodon_extras/variants_atomize.py'
2020-11-26T23:24:55,915   adding 'megalodon_extras/variants_heterozygous_factor.py'
2020-11-26T23:24:55,916   adding 'megalodon_extras/variants_index_database.py'
2020-11-26T23:24:55,918   adding 'megalodon_extras/variants_resolve.py'
2020-11-26T23:24:55,921   adding 'megalodon-2.2.8.dist-info/LICENCE.txt'
2020-11-26T23:24:55,923   adding 'megalodon-2.2.8.dist-info/METADATA'
2020-11-26T23:24:55,924   adding 'megalodon-2.2.8.dist-info/WHEEL'
2020-11-26T23:24:55,925   adding 'megalodon-2.2.8.dist-info/entry_points.txt'
2020-11-26T23:24:55,926   adding 'megalodon-2.2.8.dist-info/top_level.txt'
2020-11-26T23:24:55,928   adding 'megalodon-2.2.8.dist-info/RECORD'
2020-11-26T23:24:56,087   removing build/bdist.linux-armv7l/wheel
2020-11-26T23:24:56,403   Building wheel for megalodon (setup.py): finished with status 'done'
2020-11-26T23:24:56,491   Created wheel for megalodon: filename=megalodon-2.2.8-cp37-cp37m-linux_armv7l.whl size=8207957 sha256=2ce2ee0bda4a8fb760fee567cd75c0c8024e9a13bdb8afe8abbec784f0e5ee82
2020-11-26T23:24:56,491   Stored in directory: /tmp/pip-ephem-wheel-cache-_9r3thj1/wheels/d1/8b/af/1d2782dfc238cd63990cf19870a751097f43f033d2ae9a1ec0
2020-11-26T23:24:56,493 Successfully built megalodon
2020-11-26T23:24:56,789 Removed build tracker: '/tmp/pip-req-tracker-xxat2ok9'