2020-11-29T07:57:32,527 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-11-29T07:57:33,205 Created temporary directory: /tmp/pip-ephem-wheel-cache-ja2j4z6o 2020-11-29T07:57:33,210 Created temporary directory: /tmp/pip-req-tracker-2ak1aa5n 2020-11-29T07:57:33,211 Initialized build tracking at /tmp/pip-req-tracker-2ak1aa5n 2020-11-29T07:57:33,211 Created build tracker: /tmp/pip-req-tracker-2ak1aa5n 2020-11-29T07:57:33,212 Entered build tracker: /tmp/pip-req-tracker-2ak1aa5n 2020-11-29T07:57:33,213 Created temporary directory: /tmp/pip-wheel-dsyw2zyq 2020-11-29T07:57:33,233 1 location(s) to search for versions of jcvi: 2020-11-29T07:57:33,233 * https://pypi.org/simple/jcvi/ 2020-11-29T07:57:33,234 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2020-11-29T07:57:33,236 Getting page https://pypi.org/simple/jcvi/ 2020-11-29T07:57:33,240 Found index url 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https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2020-11-29T07:57:33,652 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2020-11-29T07:57:33,653 Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4 2020-11-29T07:57:33,654 Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2020-11-29T07:57:33,655 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2020-11-29T07:57:33,656 Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7 2020-11-29T07:57:33,657 Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8 2020-11-29T07:57:33,658 Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9 2020-11-29T07:57:33,659 Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10 2020-11-29T07:57:33,659 Found link https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 (from https://pypi.org/simple/jcvi/), version: 1.0.11 2020-11-29T07:57:33,660 Found link https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd (from https://pypi.org/simple/jcvi/), version: 1.0.12 2020-11-29T07:57:33,661 Found link https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 (from https://pypi.org/simple/jcvi/), version: 1.0.13 2020-11-29T07:57:33,691 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2020-11-29T07:57:33,693 Using version 1.0.13 (newest of versions: 1.0.13) 2020-11-29T07:57:33,702 Collecting jcvi==1.0.13 2020-11-29T07:57:33,707 Created temporary directory: /tmp/pip-unpack-tsng48jx 2020-11-29T07:57:33,985 Downloading jcvi-1.0.13.tar.gz (849 kB) 2020-11-29T07:57:35,987 Added jcvi==1.0.13 from https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 to build tracker '/tmp/pip-req-tracker-2ak1aa5n' 2020-11-29T07:57:35,989 Running setup.py (path:/tmp/pip-wheel-dsyw2zyq/jcvi/setup.py) egg_info for package jcvi 2020-11-29T07:57:35,990 Created temporary directory: /tmp/pip-pip-egg-info-k0qlldrq 2020-11-29T07:57:35,991 Running command python setup.py egg_info 2020-11-29T07:57:39,761 running egg_info 2020-11-29T07:57:39,768 creating /tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info 2020-11-29T07:57:39,771 writing top-level names to /tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info/top_level.txt 2020-11-29T07:57:39,774 writing dependency_links to /tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info/dependency_links.txt 2020-11-29T07:57:39,776 writing requirements to /tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info/requires.txt 2020-11-29T07:57:39,778 writing /tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info/PKG-INFO 2020-11-29T07:57:39,791 writing manifest file '/tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info/SOURCES.txt' 2020-11-29T07:57:39,847 reading manifest file '/tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info/SOURCES.txt' 2020-11-29T07:57:39,850 reading manifest template 'MANIFEST.in' 2020-11-29T07:57:39,879 writing manifest file '/tmp/pip-pip-egg-info-k0qlldrq/jcvi.egg-info/SOURCES.txt' 2020-11-29T07:57:39,882 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.13' to '1.0.13' 2020-11-29T07:57:39,883 warnings.warn(tmpl.format(**locals())) 2020-11-29T07:57:40,106 Source in /tmp/pip-wheel-dsyw2zyq/jcvi has version 1.0.13, which satisfies requirement jcvi==1.0.13 from https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 2020-11-29T07:57:40,108 Removed jcvi==1.0.13 from https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 from build tracker '/tmp/pip-req-tracker-2ak1aa5n' 2020-11-29T07:57:40,115 Building wheels for collected packages: jcvi 2020-11-29T07:57:40,124 Created temporary directory: /tmp/pip-wheel-xu3cbmth 2020-11-29T07:57:40,125 Building wheel for jcvi (setup.py): started 2020-11-29T07:57:40,126 Destination directory: /tmp/pip-wheel-xu3cbmth 2020-11-29T07:57:40,127 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dsyw2zyq/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dsyw2zyq/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xu3cbmth 2020-11-29T07:57:43,537 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.13' to '1.0.13' 2020-11-29T07:57:43,538 warnings.warn(tmpl.format(**locals())) 2020-11-29T07:57:43,700 running bdist_wheel 2020-11-29T07:57:43,712 running build 2020-11-29T07:57:43,713 running build_py 2020-11-29T07:57:43,725 creating build 2020-11-29T07:57:43,725 creating build/lib.linux-armv7l-3.5 2020-11-29T07:57:43,727 creating build/lib.linux-armv7l-3.5/jcvi 2020-11-29T07:57:43,730 copying jcvi/_version.py -> build/lib.linux-armv7l-3.5/jcvi 2020-11-29T07:57:43,734 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.5/jcvi 2020-11-29T07:57:43,741 creating build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,743 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,748 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,759 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,768 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,774 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,782 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,789 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,794 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,800 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,810 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,816 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,822 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,829 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,835 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,844 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,857 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,863 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,880 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,886 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,893 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,900 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,904 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,917 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,922 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,928 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,937 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,943 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,949 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,955 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,964 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:43,974 creating build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:43,977 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:43,989 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:43,998 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,005 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,010 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,017 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,024 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,030 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,035 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,040 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,049 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-11-29T07:57:44,061 creating build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,064 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,071 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,076 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,081 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,087 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,094 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,100 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,105 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,114 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,122 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,128 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,135 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,141 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,145 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,153 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,158 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,164 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,170 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,179 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,187 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,194 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,201 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,209 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-11-29T07:57:44,223 creating build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,225 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,232 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,238 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,244 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,249 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,256 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,265 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,273 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,279 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,286 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,292 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,298 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,306 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,312 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,322 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,329 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,336 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,341 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,347 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,355 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,364 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,369 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,382 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,387 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,394 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,400 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,412 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:44,427 creating build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,429 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,438 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,444 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,448 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,455 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,461 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,468 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,474 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,481 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,487 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,493 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,499 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,509 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,514 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,524 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,530 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,537 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,544 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,552 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,558 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,562 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,565 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,569 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,574 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,580 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,586 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,594 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,606 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-11-29T07:57:44,616 creating build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,618 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,627 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,634 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,640 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,651 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,657 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,663 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,669 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,674 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,681 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,689 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,694 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-11-29T07:57:44,701 creating build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,703 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,709 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,717 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,724 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,730 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,736 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,740 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,746 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,750 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,755 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-11-29T07:57:44,767 creating build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,768 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,776 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,781 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,786 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,790 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,797 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,805 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,813 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,821 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,826 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,832 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,838 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,841 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,847 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,851 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,857 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,861 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-11-29T07:57:44,874 creating build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,876 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,882 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,888 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,893 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,897 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,903 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,909 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,915 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,920 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,925 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,931 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,938 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-11-29T07:57:44,948 creating build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,950 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,958 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,964 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,972 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,979 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,986 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,990 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:44,996 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,001 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,006 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,013 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,020 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,027 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,030 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,034 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,040 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,045 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-11-29T07:57:45,054 creating build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,056 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,061 running egg_info 2020-11-29T07:57:45,082 writing jcvi.egg-info/PKG-INFO 2020-11-29T07:57:45,087 writing top-level names to jcvi.egg-info/top_level.txt 2020-11-29T07:57:45,090 writing dependency_links to jcvi.egg-info/dependency_links.txt 2020-11-29T07:57:45,093 writing requirements to jcvi.egg-info/requires.txt 2020-11-29T07:57:45,141 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-29T07:57:45,156 reading manifest template 'MANIFEST.in' 2020-11-29T07:57:45,194 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-29T07:57:45,210 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:57:45,216 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:45,221 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,228 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,244 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,253 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,263 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,272 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,278 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,283 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,289 copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,306 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,313 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,324 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,331 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-11-29T07:57:45,381 UPDATING build/lib.linux-armv7l-3.5/jcvi/_version.py 2020-11-29T07:57:45,384 set build/lib.linux-armv7l-3.5/jcvi/_version.py to 'v1.0.13' 2020-11-29T07:57:45,385 running build_ext 2020-11-29T07:57:45,578 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2020-11-29T07:57:47,370 /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dsyw2zyq/jcvi/jcvi/assembly/chic.pyx 2020-11-29T07:57:47,372 tree = Parsing.p_module(s, pxd, full_module_name) 2020-11-29T07:57:52,044 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2020-11-29T07:57:53,746 building 'jcvi.assembly.chic' extension 2020-11-29T07:57:53,748 creating build/temp.linux-armv7l-3.5 2020-11-29T07:57:53,749 creating build/temp.linux-armv7l-3.5/jcvi 2020-11-29T07:57:53,751 creating build/temp.linux-armv7l-3.5/jcvi/assembly 2020-11-29T07:57:53,753 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -O3 2020-11-29T07:57:54,392 In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, 2020-11-29T07:57:54,393 from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-11-29T07:57:54,394 from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-11-29T07:57:54,394 from jcvi/assembly/chic.c:610: 2020-11-29T07:57:54,395 /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-11-29T07:57:54,396 #warning "Using deprecated NumPy API, disable it with " \ 2020-11-29T07:57:54,396 ^~~~~~~ 2020-11-29T07:58:01,600 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so 2020-11-29T07:58:01,827 building 'jcvi.formats.cblast' extension 2020-11-29T07:58:01,829 creating build/temp.linux-armv7l-3.5/jcvi/formats 2020-11-29T07:58:01,831 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -O3 2020-11-29T07:58:14,983 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so 2020-11-29T07:58:15,264 installing to build/bdist.linux-armv7l/wheel 2020-11-29T07:58:15,265 running install 2020-11-29T07:58:15,267 running install_lib 2020-11-29T07:58:15,275 creating build/bdist.linux-armv7l 2020-11-29T07:58:15,276 creating build/bdist.linux-armv7l/wheel 2020-11-29T07:58:15,280 creating build/bdist.linux-armv7l/wheel/jcvi 2020-11-29T07:58:15,285 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,287 copying build/lib.linux-armv7l-3.5/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,292 copying build/lib.linux-armv7l-3.5/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,304 copying build/lib.linux-armv7l-3.5/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,313 copying build/lib.linux-armv7l-3.5/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,320 copying build/lib.linux-armv7l-3.5/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,328 copying build/lib.linux-armv7l-3.5/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,335 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,342 copying build/lib.linux-armv7l-3.5/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,348 copying build/lib.linux-armv7l-3.5/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,354 copying build/lib.linux-armv7l-3.5/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,364 copying build/lib.linux-armv7l-3.5/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,370 copying build/lib.linux-armv7l-3.5/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,377 copying build/lib.linux-armv7l-3.5/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,384 copying build/lib.linux-armv7l-3.5/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,391 copying build/lib.linux-armv7l-3.5/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,399 copying build/lib.linux-armv7l-3.5/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,411 copying build/lib.linux-armv7l-3.5/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,416 copying build/lib.linux-armv7l-3.5/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,432 copying build/lib.linux-armv7l-3.5/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,438 copying build/lib.linux-armv7l-3.5/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,446 copying build/lib.linux-armv7l-3.5/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,453 copying build/lib.linux-armv7l-3.5/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,458 copying build/lib.linux-armv7l-3.5/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,471 copying build/lib.linux-armv7l-3.5/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,476 copying build/lib.linux-armv7l-3.5/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,483 copying build/lib.linux-armv7l-3.5/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,493 copying build/lib.linux-armv7l-3.5/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,499 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,545 copying build/lib.linux-armv7l-3.5/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,552 copying build/lib.linux-armv7l-3.5/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,558 copying build/lib.linux-armv7l-3.5/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,567 copying build/lib.linux-armv7l-3.5/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T07:58:15,574 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,577 copying build/lib.linux-armv7l-3.5/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,587 copying build/lib.linux-armv7l-3.5/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,596 copying build/lib.linux-armv7l-3.5/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,603 copying build/lib.linux-armv7l-3.5/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,609 copying build/lib.linux-armv7l-3.5/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,617 copying build/lib.linux-armv7l-3.5/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,624 copying build/lib.linux-armv7l-3.5/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,631 copying build/lib.linux-armv7l-3.5/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,636 copying build/lib.linux-armv7l-3.5/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,641 copying build/lib.linux-armv7l-3.5/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,650 copying build/lib.linux-armv7l-3.5/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T07:58:15,663 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,665 copying build/lib.linux-armv7l-3.5/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,674 copying build/lib.linux-armv7l-3.5/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,681 copying build/lib.linux-armv7l-3.5/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,688 copying build/lib.linux-armv7l-3.5/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,697 copying build/lib.linux-armv7l-3.5/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,704 copying build/lib.linux-armv7l-3.5/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,710 copying build/lib.linux-armv7l-3.5/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,716 copying build/lib.linux-armv7l-3.5/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,725 copying build/lib.linux-armv7l-3.5/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,734 copying build/lib.linux-armv7l-3.5/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,740 copying build/lib.linux-armv7l-3.5/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,747 copying build/lib.linux-armv7l-3.5/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,753 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,758 copying build/lib.linux-armv7l-3.5/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,765 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,771 copying build/lib.linux-armv7l-3.5/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,778 copying build/lib.linux-armv7l-3.5/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,784 copying build/lib.linux-armv7l-3.5/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,791 copying build/lib.linux-armv7l-3.5/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,800 copying build/lib.linux-armv7l-3.5/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,808 copying build/lib.linux-armv7l-3.5/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,814 copying build/lib.linux-armv7l-3.5/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,821 copying build/lib.linux-armv7l-3.5/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T07:58:15,829 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,831 copying build/lib.linux-armv7l-3.5/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,839 copying build/lib.linux-armv7l-3.5/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,847 copying build/lib.linux-armv7l-3.5/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,854 copying build/lib.linux-armv7l-3.5/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,862 copying build/lib.linux-armv7l-3.5/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,869 copying build/lib.linux-armv7l-3.5/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,877 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,882 copying build/lib.linux-armv7l-3.5/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,888 copying build/lib.linux-armv7l-3.5/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,894 copying build/lib.linux-armv7l-3.5/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,902 copying build/lib.linux-armv7l-3.5/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,908 copying build/lib.linux-armv7l-3.5/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,914 copying build/lib.linux-armv7l-3.5/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,922 copying build/lib.linux-armv7l-3.5/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,928 copying build/lib.linux-armv7l-3.5/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,938 copying build/lib.linux-armv7l-3.5/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,945 copying build/lib.linux-armv7l-3.5/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,953 copying build/lib.linux-armv7l-3.5/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,960 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,968 copying build/lib.linux-armv7l-3.5/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,977 copying build/lib.linux-armv7l-3.5/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:15,987 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,013 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,017 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,030 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,036 copying build/lib.linux-armv7l-3.5/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,043 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,049 copying build/lib.linux-armv7l-3.5/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,062 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T07:58:16,072 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,075 copying build/lib.linux-armv7l-3.5/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,085 copying build/lib.linux-armv7l-3.5/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,093 copying build/lib.linux-armv7l-3.5/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,099 copying build/lib.linux-armv7l-3.5/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,107 copying build/lib.linux-armv7l-3.5/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,114 copying build/lib.linux-armv7l-3.5/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,121 copying build/lib.linux-armv7l-3.5/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,128 copying build/lib.linux-armv7l-3.5/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,135 copying build/lib.linux-armv7l-3.5/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,141 copying build/lib.linux-armv7l-3.5/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,147 copying build/lib.linux-armv7l-3.5/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,154 copying build/lib.linux-armv7l-3.5/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,162 copying build/lib.linux-armv7l-3.5/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,167 copying build/lib.linux-armv7l-3.5/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,174 copying build/lib.linux-armv7l-3.5/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,180 copying build/lib.linux-armv7l-3.5/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,187 copying build/lib.linux-armv7l-3.5/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,194 copying build/lib.linux-armv7l-3.5/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,202 copying build/lib.linux-armv7l-3.5/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,209 copying build/lib.linux-armv7l-3.5/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,214 copying build/lib.linux-armv7l-3.5/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,219 copying build/lib.linux-armv7l-3.5/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,225 copying build/lib.linux-armv7l-3.5/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,232 copying build/lib.linux-armv7l-3.5/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,239 copying build/lib.linux-armv7l-3.5/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,245 copying build/lib.linux-armv7l-3.5/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,252 copying build/lib.linux-armv7l-3.5/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,265 copying build/lib.linux-armv7l-3.5/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T07:58:16,271 copying build/lib.linux-armv7l-3.5/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-29T07:58:16,279 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,281 copying build/lib.linux-armv7l-3.5/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,290 copying build/lib.linux-armv7l-3.5/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,297 copying build/lib.linux-armv7l-3.5/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,304 copying build/lib.linux-armv7l-3.5/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,314 copying build/lib.linux-armv7l-3.5/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,321 copying build/lib.linux-armv7l-3.5/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,328 copying build/lib.linux-armv7l-3.5/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,336 copying build/lib.linux-armv7l-3.5/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,343 copying build/lib.linux-armv7l-3.5/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,350 copying build/lib.linux-armv7l-3.5/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,359 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,363 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T07:58:16,369 copying build/lib.linux-armv7l-3.5/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-29T07:58:16,376 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,379 copying build/lib.linux-armv7l-3.5/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,386 copying build/lib.linux-armv7l-3.5/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,393 copying build/lib.linux-armv7l-3.5/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,399 copying build/lib.linux-armv7l-3.5/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,404 copying build/lib.linux-armv7l-3.5/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,409 copying build/lib.linux-armv7l-3.5/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,414 copying build/lib.linux-armv7l-3.5/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,421 copying build/lib.linux-armv7l-3.5/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,427 copying build/lib.linux-armv7l-3.5/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,433 copying build/lib.linux-armv7l-3.5/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T07:58:16,445 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,447 copying build/lib.linux-armv7l-3.5/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,454 copying build/lib.linux-armv7l-3.5/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,459 copying build/lib.linux-armv7l-3.5/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,465 copying build/lib.linux-armv7l-3.5/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,471 copying build/lib.linux-armv7l-3.5/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,479 copying build/lib.linux-armv7l-3.5/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,486 copying build/lib.linux-armv7l-3.5/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,493 copying build/lib.linux-armv7l-3.5/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,499 copying build/lib.linux-armv7l-3.5/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,504 copying build/lib.linux-armv7l-3.5/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,512 copying build/lib.linux-armv7l-3.5/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,520 copying build/lib.linux-armv7l-3.5/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,525 copying build/lib.linux-armv7l-3.5/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,532 copying build/lib.linux-armv7l-3.5/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,538 copying build/lib.linux-armv7l-3.5/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,545 copying build/lib.linux-armv7l-3.5/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,551 copying build/lib.linux-armv7l-3.5/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T07:58:16,566 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,569 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,576 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,584 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,590 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,596 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,603 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,609 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,615 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,620 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,625 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,632 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,638 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T07:58:16,647 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,650 copying build/lib.linux-armv7l-3.5/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,659 copying build/lib.linux-armv7l-3.5/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,667 copying build/lib.linux-armv7l-3.5/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,676 copying build/lib.linux-armv7l-3.5/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,684 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,687 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,693 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,710 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,718 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,727 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,737 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,743 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,749 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,756 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,762 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,768 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,777 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,785 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,801 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T07:58:16,806 copying build/lib.linux-armv7l-3.5/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,813 copying build/lib.linux-armv7l-3.5/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,819 copying build/lib.linux-armv7l-3.5/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,826 copying build/lib.linux-armv7l-3.5/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,834 copying build/lib.linux-armv7l-3.5/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,840 copying build/lib.linux-armv7l-3.5/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,847 copying build/lib.linux-armv7l-3.5/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,853 copying build/lib.linux-armv7l-3.5/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,860 copying build/lib.linux-armv7l-3.5/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,865 copying build/lib.linux-armv7l-3.5/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,871 copying build/lib.linux-armv7l-3.5/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,878 copying build/lib.linux-armv7l-3.5/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,885 copying build/lib.linux-armv7l-3.5/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T07:58:16,891 running install_egg_info 2020-11-29T07:58:16,931 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.13-py3.5.egg-info 2020-11-29T07:58:16,968 running install_scripts 2020-11-29T07:58:17,136 creating build/bdist.linux-armv7l/wheel/jcvi-1.0.13.dist-info/WHEEL 2020-11-29T07:58:19,420 Building wheel for jcvi (setup.py): finished with status 'done' 2020-11-29T07:58:19,446 Created wheel for jcvi: filename=jcvi-1.0.13-cp35-cp35m-linux_armv7l.whl size=1177876 sha256=3aa1199699d03b32ddb910b8ee7fb6b02bd9c40e09b611b1f1a299ac312b13a1 2020-11-29T07:58:19,447 Stored in directory: /tmp/pip-ephem-wheel-cache-ja2j4z6o/wheels/a3/c6/95/d487f7f5e7daf90e2c9e14387b6afc5fbc8c64c9b8970fb4b2 2020-11-29T07:58:19,451 Successfully built jcvi 2020-11-29T07:58:19,663 Removed build tracker: '/tmp/pip-req-tracker-2ak1aa5n'