2020-11-29T08:00:25,893 Created temporary directory: /tmp/pip-ephem-wheel-cache-xjaqtjkc 2020-11-29T08:00:25,896 Created temporary directory: /tmp/pip-req-tracker-bjxcxuwm 2020-11-29T08:00:25,896 Initialized build tracking at /tmp/pip-req-tracker-bjxcxuwm 2020-11-29T08:00:25,896 Created build tracker: /tmp/pip-req-tracker-bjxcxuwm 2020-11-29T08:00:25,897 Entered build tracker: /tmp/pip-req-tracker-bjxcxuwm 2020-11-29T08:00:25,897 Created temporary directory: /tmp/pip-wheel-enc6wa3u 2020-11-29T08:00:25,908 1 location(s) to search for versions of jcvi: 2020-11-29T08:00:25,908 * https://pypi.org/simple/jcvi/ 2020-11-29T08:00:25,909 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2020-11-29T08:00:25,909 Getting page https://pypi.org/simple/jcvi/ 2020-11-29T08:00:25,911 Found index url https://pypi.org/simple 2020-11-29T08:00:26,027 Found link 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https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10 2020-11-29T08:00:26,028 Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12 2020-11-29T08:00:26,029 Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1 2020-11-29T08:00:26,029 Found link 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https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9 2020-11-29T08:00:26,031 Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1 2020-11-29T08:00:26,032 Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2 2020-11-29T08:00:26,032 Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6 2020-11-29T08:00:26,032 Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9 2020-11-29T08:00:26,032 Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1 2020-11-29T08:00:26,033 Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3 2020-11-29T08:00:26,033 Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4 2020-11-29T08:00:26,033 Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5 2020-11-29T08:00:26,034 Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6 2020-11-29T08:00:26,034 Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7 2020-11-29T08:00:26,034 Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4 2020-11-29T08:00:26,035 Found link 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https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10 2020-11-29T08:00:26,036 Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11 2020-11-29T08:00:26,036 Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12 2020-11-29T08:00:26,037 Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13 2020-11-29T08:00:26,037 Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14 2020-11-29T08:00:26,037 Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1 2020-11-29T08:00:26,037 Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2020-11-29T08:00:26,038 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2020-11-29T08:00:26,038 Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4 2020-11-29T08:00:26,038 Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2020-11-29T08:00:26,039 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2020-11-29T08:00:26,039 Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7 2020-11-29T08:00:26,039 Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8 2020-11-29T08:00:26,040 Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9 2020-11-29T08:00:26,040 Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10 2020-11-29T08:00:26,040 Found link https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 (from https://pypi.org/simple/jcvi/), version: 1.0.11 2020-11-29T08:00:26,040 Found link https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd (from https://pypi.org/simple/jcvi/), version: 1.0.12 2020-11-29T08:00:26,041 Found link https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 (from https://pypi.org/simple/jcvi/), version: 1.0.13 2020-11-29T08:00:26,052 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2020-11-29T08:00:26,052 Using version 1.0.13 (newest of versions: 1.0.13) 2020-11-29T08:00:26,056 Collecting jcvi==1.0.13 2020-11-29T08:00:26,058 Created temporary directory: /tmp/pip-unpack-8ni2lprl 2020-11-29T08:00:26,125 Downloading jcvi-1.0.13.tar.gz (849 kB) 2020-11-29T08:00:26,933 Added jcvi==1.0.13 from https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 to build tracker '/tmp/pip-req-tracker-bjxcxuwm' 2020-11-29T08:00:26,934 Running setup.py (path:/tmp/pip-wheel-enc6wa3u/jcvi/setup.py) egg_info for package jcvi 2020-11-29T08:00:26,935 Created temporary directory: /tmp/pip-pip-egg-info-osoq1f4e 2020-11-29T08:00:26,936 Running command python setup.py egg_info 2020-11-29T08:00:29,624 running egg_info 2020-11-29T08:00:29,626 creating /tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info 2020-11-29T08:00:29,627 writing /tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info/PKG-INFO 2020-11-29T08:00:29,631 writing dependency_links to /tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info/dependency_links.txt 2020-11-29T08:00:29,633 writing requirements to /tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info/requires.txt 2020-11-29T08:00:29,634 writing top-level names to /tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info/top_level.txt 2020-11-29T08:00:29,636 writing manifest file '/tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info/SOURCES.txt' 2020-11-29T08:00:29,661 reading manifest file '/tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info/SOURCES.txt' 2020-11-29T08:00:29,662 reading manifest template 'MANIFEST.in' 2020-11-29T08:00:29,675 writing manifest file '/tmp/pip-pip-egg-info-osoq1f4e/jcvi.egg-info/SOURCES.txt' 2020-11-29T08:00:29,676 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.13' to '1.0.13' 2020-11-29T08:00:29,677 warnings.warn(tmpl.format(**locals())) 2020-11-29T08:00:29,775 Source in /tmp/pip-wheel-enc6wa3u/jcvi has version 1.0.13, which satisfies requirement jcvi==1.0.13 from https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 2020-11-29T08:00:29,776 Removed jcvi==1.0.13 from https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 from build tracker '/tmp/pip-req-tracker-bjxcxuwm' 2020-11-29T08:00:29,779 Building wheels for collected packages: jcvi 2020-11-29T08:00:29,784 Created temporary directory: /tmp/pip-wheel-ygkvqnz8 2020-11-29T08:00:29,785 Building wheel for jcvi (setup.py): started 2020-11-29T08:00:29,785 Destination directory: /tmp/pip-wheel-ygkvqnz8 2020-11-29T08:00:29,786 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-enc6wa3u/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-enc6wa3u/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ygkvqnz8 2020-11-29T08:00:31,204 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.13' to '1.0.13' 2020-11-29T08:00:31,205 warnings.warn(tmpl.format(**locals())) 2020-11-29T08:00:31,262 running bdist_wheel 2020-11-29T08:00:31,267 running build 2020-11-29T08:00:31,267 running build_py 2020-11-29T08:00:31,273 creating build 2020-11-29T08:00:31,273 creating build/lib.linux-armv7l-3.7 2020-11-29T08:00:31,274 creating build/lib.linux-armv7l-3.7/jcvi 2020-11-29T08:00:31,275 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2020-11-29T08:00:31,277 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2020-11-29T08:00:31,281 creating build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,282 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,285 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,289 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,292 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,293 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,296 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,298 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,301 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,303 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,305 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,307 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,310 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,313 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,315 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,318 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,321 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,324 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,327 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,329 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,332 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,335 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,337 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,340 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,342 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,345 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,348 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,351 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,354 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-11-29T08:00:31,359 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,360 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,363 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,365 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,368 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,371 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,373 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,377 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,380 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,383 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,385 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,389 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,393 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-11-29T08:00:31,398 creating build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,399 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,403 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,405 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,408 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,411 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,414 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,417 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,420 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,423 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,425 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,428 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,430 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,433 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,438 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,441 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,445 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,448 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-11-29T08:00:31,452 creating build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,453 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,455 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,458 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,461 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,463 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,466 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,470 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,473 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,476 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,478 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,481 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-11-29T08:00:31,487 creating build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,488 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,490 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,493 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,496 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,499 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,502 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,504 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,507 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,511 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,514 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-11-29T08:00:31,519 creating build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,520 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,523 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,525 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,528 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,530 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,533 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,537 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,540 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,542 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,545 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,547 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,551 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,555 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,557 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,560 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,564 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,566 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-11-29T08:00:31,570 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,571 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,573 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,576 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,579 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,582 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,584 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,587 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,589 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,592 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,594 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,597 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,600 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-11-29T08:00:31,605 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,606 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,611 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,613 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,616 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,620 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,622 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,624 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,627 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,631 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,635 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,638 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,640 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,644 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,647 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,650 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,653 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,656 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,659 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,662 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,664 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,667 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,670 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,674 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,677 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,679 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,682 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,685 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,690 creating build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,691 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,694 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,697 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,700 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,702 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,705 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,707 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,710 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,713 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,716 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,718 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,722 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,724 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,727 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,732 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,735 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,738 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,743 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,745 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,752 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,754 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,757 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,759 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,762 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,765 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,768 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,773 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,777 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,780 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,782 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,787 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,788 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,791 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,793 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,796 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,799 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,802 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,805 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,808 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,811 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,813 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,816 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,819 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,822 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,824 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,826 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,829 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,832 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,835 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,839 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,842 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,844 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,847 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,850 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-11-29T08:00:31,853 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,854 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,856 running egg_info 2020-11-29T08:00:31,867 writing jcvi.egg-info/PKG-INFO 2020-11-29T08:00:31,870 writing dependency_links to jcvi.egg-info/dependency_links.txt 2020-11-29T08:00:31,872 writing requirements to jcvi.egg-info/requires.txt 2020-11-29T08:00:31,873 writing top-level names to jcvi.egg-info/top_level.txt 2020-11-29T08:00:31,895 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-29T08:00:31,902 reading manifest template 'MANIFEST.in' 2020-11-29T08:00:31,917 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2020-11-29T08:00:31,924 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:31,926 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:31,929 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,931 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,938 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,942 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,946 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,949 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,951 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,954 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,957 copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,963 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,966 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,970 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,973 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-11-29T08:00:31,994 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2020-11-29T08:00:31,996 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.13' 2020-11-29T08:00:31,996 running build_ext 2020-11-29T08:00:32,083 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2020-11-29T08:00:32,908 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-enc6wa3u/jcvi/jcvi/assembly/chic.pyx 2020-11-29T08:00:32,909 tree = Parsing.p_module(s, pxd, full_module_name) 2020-11-29T08:00:34,713 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2020-11-29T08:00:35,363 building 'jcvi.assembly.chic' extension 2020-11-29T08:00:35,364 creating build/temp.linux-armv7l-3.7 2020-11-29T08:00:35,365 creating build/temp.linux-armv7l-3.7/jcvi 2020-11-29T08:00:35,366 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2020-11-29T08:00:35,367 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2020-11-29T08:00:36,659 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-11-29T08:00:36,659 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-11-29T08:00:36,659 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-11-29T08:00:36,660 from jcvi/assembly/chic.c:610: 2020-11-29T08:00:36,660 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-11-29T08:00:36,660 #warning "Using deprecated NumPy API, disable it with " \ 2020-11-29T08:00:36,661 ^~~~~~~ 2020-11-29T08:00:40,483 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2020-11-29T08:00:40,690 building 'jcvi.formats.cblast' extension 2020-11-29T08:00:40,691 creating build/temp.linux-armv7l-3.7/jcvi/formats 2020-11-29T08:00:40,695 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2020-11-29T08:00:47,770 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2020-11-29T08:00:47,937 installing to build/bdist.linux-armv7l/wheel 2020-11-29T08:00:47,938 running install 2020-11-29T08:00:47,939 running install_lib 2020-11-29T08:00:47,944 creating build/bdist.linux-armv7l 2020-11-29T08:00:47,944 creating build/bdist.linux-armv7l/wheel 2020-11-29T08:00:47,946 creating build/bdist.linux-armv7l/wheel/jcvi 2020-11-29T08:00:47,948 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-29T08:00:47,951 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,952 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,956 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,960 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,963 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,965 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,968 copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,970 copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,973 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,975 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,977 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,980 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,983 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,985 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,988 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,991 copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,993 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,997 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:47,1000 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,002 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,005 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,007 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,009 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,012 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,014 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,018 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,022 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,025 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,028 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-11-29T08:00:48,032 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,033 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,036 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,038 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,041 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,044 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,046 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,050 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,053 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,056 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,058 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,061 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,064 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-11-29T08:00:48,068 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,069 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,072 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,074 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,078 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,080 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,083 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,086 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,089 copying build/lib.linux-armv7l-3.7/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,092 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,094 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,097 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,099 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,103 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,107 copying build/lib.linux-armv7l-3.7/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,110 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,113 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,116 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-11-29T08:00:48,120 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,121 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,124 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,127 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,129 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,132 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,135 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,138 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,141 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,143 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,146 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,148 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-11-29T08:00:48,154 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-11-29T08:00:48,157 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,158 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,160 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,162 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,165 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,168 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,171 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,173 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,176 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,180 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,183 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-11-29T08:00:48,187 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,188 copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,191 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,193 copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,197 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,198 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,200 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,202 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,204 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,207 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,210 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,213 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,216 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,222 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,224 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,230 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,232 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,235 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,239 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-11-29T08:00:48,243 copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,246 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,248 copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,252 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,255 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,258 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,261 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,263 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,266 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,270 copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,273 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,276 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,279 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,282 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-11-29T08:00:48,286 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,287 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,289 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,292 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,295 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,298 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,300 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,304 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,307 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,309 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,312 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,316 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,319 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-11-29T08:00:48,323 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,324 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,329 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,332 copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,335 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,339 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,341 copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,343 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,347 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,350 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,355 copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,358 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,361 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,364 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,368 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,372 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,375 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,378 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,388 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,392 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,395 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,397 copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,400 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,403 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,407 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,410 copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,413 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,415 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,418 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,421 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-11-29T08:00:48,425 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,426 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,429 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,432 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,436 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,438 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,441 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,443 copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,446 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,448 copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,451 copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,454 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,458 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,460 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,463 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,469 copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,472 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,476 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,480 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,496 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,498 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,504 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,506 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,508 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,511 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,514 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,517 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,520 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,523 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,528 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,532 copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,534 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,537 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-11-29T08:00:48,542 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,543 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,547 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,549 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,552 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,555 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,558 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,561 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,565 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,568 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,570 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,574 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,576 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,579 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,581 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,584 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,588 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,590 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,593 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,596 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,598 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,601 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,604 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,606 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-11-29T08:00:48,609 running install_egg_info 2020-11-29T08:00:48,628 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.13-py3.7.egg-info 2020-11-29T08:00:48,645 running install_scripts 2020-11-29T08:00:48,712 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-11-29T08:00:48,719 creating build/bdist.linux-armv7l/wheel/jcvi-1.0.13.dist-info/WHEEL 2020-11-29T08:00:48,722 creating '/tmp/pip-wheel-ygkvqnz8/jcvi-1.0.13-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-11-29T08:00:48,725 adding 'jcvi/__init__.py' 2020-11-29T08:00:48,727 adding 'jcvi/_version.py' 2020-11-29T08:00:48,729 adding 'jcvi/algorithms/__init__.py' 2020-11-29T08:00:48,730 adding 'jcvi/algorithms/__main__.py' 2020-11-29T08:00:48,732 adding 'jcvi/algorithms/ec.py' 2020-11-29T08:00:48,734 adding 'jcvi/algorithms/formula.py' 2020-11-29T08:00:48,737 adding 'jcvi/algorithms/graph.py' 2020-11-29T08:00:48,739 adding 'jcvi/algorithms/lis.py' 2020-11-29T08:00:48,742 adding 'jcvi/algorithms/lpsolve.py' 2020-11-29T08:00:48,744 adding 'jcvi/algorithms/matrix.py' 2020-11-29T08:00:48,745 adding 'jcvi/algorithms/maxsum.py' 2020-11-29T08:00:48,747 adding 'jcvi/algorithms/ml.py' 2020-11-29T08:00:48,748 adding 'jcvi/algorithms/supermap.py' 2020-11-29T08:00:48,750 adding 'jcvi/algorithms/tsp.py' 2020-11-29T08:00:48,753 adding 'jcvi/annotation/__init__.py' 2020-11-29T08:00:48,754 adding 'jcvi/annotation/__main__.py' 2020-11-29T08:00:48,757 adding 'jcvi/annotation/ahrd.py' 2020-11-29T08:00:48,759 adding 'jcvi/annotation/automaton.py' 2020-11-29T08:00:48,761 adding 'jcvi/annotation/depth.py' 2020-11-29T08:00:48,763 adding 'jcvi/annotation/evm.py' 2020-11-29T08:00:48,765 adding 'jcvi/annotation/maker.py' 2020-11-29T08:00:48,768 adding 'jcvi/annotation/pasa.py' 2020-11-29T08:00:48,770 adding 'jcvi/annotation/qc.py' 2020-11-29T08:00:48,776 adding 'jcvi/annotation/reformat.py' 2020-11-29T08:00:48,779 adding 'jcvi/annotation/stats.py' 2020-11-29T08:00:48,781 adding 'jcvi/annotation/train.py' 2020-11-29T08:00:48,783 adding 'jcvi/apps/__init__.py' 2020-11-29T08:00:48,784 adding 'jcvi/apps/__main__.py' 2020-11-29T08:00:48,787 adding 'jcvi/apps/align.py' 2020-11-29T08:00:48,796 adding 'jcvi/apps/base.py' 2020-11-29T08:00:48,798 adding 'jcvi/apps/biomart.py' 2020-11-29T08:00:48,800 adding 'jcvi/apps/blastplus.py' 2020-11-29T08:00:48,801 adding 'jcvi/apps/bowtie.py' 2020-11-29T08:00:48,803 adding 'jcvi/apps/bwa.py' 2020-11-29T08:00:48,805 adding 'jcvi/apps/cap3.py' 2020-11-29T08:00:48,807 adding 'jcvi/apps/cdhit.py' 2020-11-29T08:00:48,809 adding 'jcvi/apps/console.py' 2020-11-29T08:00:48,810 adding 'jcvi/apps/emboss.py' 2020-11-29T08:00:48,813 adding 'jcvi/apps/fetch.py' 2020-11-29T08:00:48,816 adding 'jcvi/apps/gbsubmit.py' 2020-11-29T08:00:48,818 adding 'jcvi/apps/gmap.py' 2020-11-29T08:00:48,820 adding 'jcvi/apps/grid.py' 2020-11-29T08:00:48,825 adding 'jcvi/apps/ks.py' 2020-11-29T08:00:48,827 adding 'jcvi/apps/lastz.py' 2020-11-29T08:00:48,828 adding 'jcvi/apps/mask.py' 2020-11-29T08:00:48,833 adding 'jcvi/apps/phylo.py' 2020-11-29T08:00:48,835 adding 'jcvi/apps/r.py' 2020-11-29T08:00:48,836 adding 'jcvi/apps/restriction.py' 2020-11-29T08:00:48,838 adding 'jcvi/apps/script.py' 2020-11-29T08:00:48,839 adding 'jcvi/apps/softlink.py' 2020-11-29T08:00:48,841 adding 'jcvi/apps/tesseract.py' 2020-11-29T08:00:48,846 adding 'jcvi/apps/uclust.py' 2020-11-29T08:00:48,847 adding 'jcvi/apps/uniprot.py' 2020-11-29T08:00:48,849 adding 'jcvi/apps/vecscreen.py' 2020-11-29T08:00:48,851 adding 'jcvi/assembly/__init__.py' 2020-11-29T08:00:48,852 adding 'jcvi/assembly/__main__.py' 2020-11-29T08:00:48,862 adding 'jcvi/assembly/allmaps.py' 2020-11-29T08:00:48,865 adding 'jcvi/assembly/allpaths.py' 2020-11-29T08:00:48,867 adding 'jcvi/assembly/amos.py' 2020-11-29T08:00:48,869 adding 'jcvi/assembly/automaton.py' 2020-11-29T08:00:48,870 adding 'jcvi/assembly/bambus.py' 2020-11-29T08:00:48,872 adding 'jcvi/assembly/base.py' 2020-11-29T08:00:48,877 adding 'jcvi/assembly/ca.py' 2020-11-29T08:00:48,926 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2020-11-29T08:00:48,929 adding 'jcvi/assembly/chic.pyx' 2020-11-29T08:00:48,931 adding 'jcvi/assembly/coverage.py' 2020-11-29T08:00:48,933 adding 'jcvi/assembly/gaps.py' 2020-11-29T08:00:48,936 adding 'jcvi/assembly/geneticmap.py' 2020-11-29T08:00:48,940 adding 'jcvi/assembly/goldenpath.py' 2020-11-29T08:00:48,948 adding 'jcvi/assembly/hic.py' 2020-11-29T08:00:48,954 adding 'jcvi/assembly/kmer.py' 2020-11-29T08:00:48,955 adding 'jcvi/assembly/meraculous.py' 2020-11-29T08:00:48,957 adding 'jcvi/assembly/opticalmap.py' 2020-11-29T08:00:48,962 adding 'jcvi/assembly/patch.py' 2020-11-29T08:00:48,964 adding 'jcvi/assembly/pbjelly.py' 2020-11-29T08:00:48,967 adding 'jcvi/assembly/postprocess.py' 2020-11-29T08:00:48,970 adding 'jcvi/assembly/preprocess.py' 2020-11-29T08:00:48,972 adding 'jcvi/assembly/sim.py' 2020-11-29T08:00:48,974 adding 'jcvi/assembly/soap.py' 2020-11-29T08:00:48,976 adding 'jcvi/assembly/sspace.py' 2020-11-29T08:00:48,978 adding 'jcvi/assembly/syntenypath.py' 2020-11-29T08:00:48,980 adding 'jcvi/assembly/trinity.py' 2020-11-29T08:00:48,982 adding 'jcvi/assembly/unitig.py' 2020-11-29T08:00:48,984 adding 'jcvi/compara/__init__.py' 2020-11-29T08:00:48,985 adding 'jcvi/compara/__main__.py' 2020-11-29T08:00:48,987 adding 'jcvi/compara/blastfilter.py' 2020-11-29T08:00:48,991 adding 'jcvi/compara/catalog.py' 2020-11-29T08:00:48,995 adding 'jcvi/compara/fractionation.py' 2020-11-29T08:00:48,997 adding 'jcvi/compara/pad.py' 2020-11-29T08:00:48,998 adding 'jcvi/compara/phylogeny.py' 2020-11-29T08:00:49,000 adding 'jcvi/compara/quota.py' 2020-11-29T08:00:49,003 adding 'jcvi/compara/reconstruct.py' 2020-11-29T08:00:49,004 adding 'jcvi/compara/synfind.py' 2020-11-29T08:00:49,013 adding 'jcvi/compara/synteny.py' 2020-11-29T08:00:49,016 adding 'jcvi/formats/__init__.py' 2020-11-29T08:00:49,017 adding 'jcvi/formats/__main__.py' 2020-11-29T08:00:49,018 adding 'jcvi/formats/ace.py' 2020-11-29T08:00:49,026 adding 'jcvi/formats/agp.py' 2020-11-29T08:00:49,031 adding 'jcvi/formats/base.py' 2020-11-29T08:00:49,041 adding 'jcvi/formats/bed.py' 2020-11-29T08:00:49,047 adding 'jcvi/formats/blast.py' 2020-11-29T08:00:49,049 adding 'jcvi/formats/btab.py' 2020-11-29T08:00:49,154 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2020-11-29T08:00:49,158 adding 'jcvi/formats/cblast.pyx' 2020-11-29T08:00:49,160 adding 'jcvi/formats/cdt.py' 2020-11-29T08:00:49,161 adding 'jcvi/formats/chain.py' 2020-11-29T08:00:49,163 adding 'jcvi/formats/contig.py' 2020-11-29T08:00:49,165 adding 'jcvi/formats/coords.py' 2020-11-29T08:00:49,167 adding 'jcvi/formats/excel.py' 2020-11-29T08:00:49,178 adding 'jcvi/formats/fasta.py' 2020-11-29T08:00:49,182 adding 'jcvi/formats/fastq.py' 2020-11-29T08:00:49,184 adding 'jcvi/formats/fpc.py' 2020-11-29T08:00:49,186 adding 'jcvi/formats/genbank.py' 2020-11-29T08:00:49,201 adding 'jcvi/formats/gff.py' 2020-11-29T08:00:49,204 adding 'jcvi/formats/html.py' 2020-11-29T08:00:49,205 adding 'jcvi/formats/maf.py' 2020-11-29T08:00:49,207 adding 'jcvi/formats/obo.py' 2020-11-29T08:00:49,208 adding 'jcvi/formats/paf.py' 2020-11-29T08:00:49,209 adding 'jcvi/formats/pdf.py' 2020-11-29T08:00:49,211 adding 'jcvi/formats/posmap.py' 2020-11-29T08:00:49,213 adding 'jcvi/formats/psl.py' 2020-11-29T08:00:49,214 adding 'jcvi/formats/pyblast.py' 2020-11-29T08:00:49,218 adding 'jcvi/formats/sam.py' 2020-11-29T08:00:49,220 adding 'jcvi/formats/sbt.py' 2020-11-29T08:00:49,222 adding 'jcvi/formats/sizes.py' 2020-11-29T08:00:49,225 adding 'jcvi/formats/vcf.py' 2020-11-29T08:00:49,228 adding 'jcvi/graphics/__init__.py' 2020-11-29T08:00:49,229 adding 'jcvi/graphics/__main__.py' 2020-11-29T08:00:49,232 adding 'jcvi/graphics/align.py' 2020-11-29T08:00:49,235 adding 'jcvi/graphics/assembly.py' 2020-11-29T08:00:49,238 adding 'jcvi/graphics/base.py' 2020-11-29T08:00:49,240 adding 'jcvi/graphics/blastplot.py' 2020-11-29T08:00:49,244 adding 'jcvi/graphics/chromosome.py' 2020-11-29T08:00:49,246 adding 'jcvi/graphics/coverage.py' 2020-11-29T08:00:49,249 adding 'jcvi/graphics/dotplot.py' 2020-11-29T08:00:49,252 adding 'jcvi/graphics/glyph.py' 2020-11-29T08:00:49,255 adding 'jcvi/graphics/grabseeds.py' 2020-11-29T08:00:49,257 adding 'jcvi/graphics/graph.py' 2020-11-29T08:00:49,258 adding 'jcvi/graphics/heatmap.py' 2020-11-29T08:00:49,260 adding 'jcvi/graphics/histogram.py' 2020-11-29T08:00:49,263 adding 'jcvi/graphics/karyotype.py' 2020-11-29T08:00:49,267 adding 'jcvi/graphics/landscape.py' 2020-11-29T08:00:49,269 adding 'jcvi/graphics/logo.py' 2020-11-29T08:00:49,270 adding 'jcvi/graphics/mummerplot.py' 2020-11-29T08:00:49,273 adding 'jcvi/graphics/synteny.py' 2020-11-29T08:00:49,275 adding 'jcvi/graphics/table.py' 2020-11-29T08:00:49,278 adding 'jcvi/graphics/tree.py' 2020-11-29T08:00:49,279 adding 'jcvi/graphics/wheel.py' 2020-11-29T08:00:49,281 adding 'jcvi/graphics/whisker.py' 2020-11-29T08:00:49,283 adding 'jcvi/projects/__init__.py' 2020-11-29T08:00:49,284 adding 'jcvi/projects/__main__.py' 2020-11-29T08:00:49,287 adding 'jcvi/projects/age.py' 2020-11-29T08:00:49,288 adding 'jcvi/projects/alfalfa.py' 2020-11-29T08:00:49,291 adding 'jcvi/projects/allmaps.py' 2020-11-29T08:00:49,293 adding 'jcvi/projects/bites.py' 2020-11-29T08:00:49,295 adding 'jcvi/projects/heterosis.py' 2020-11-29T08:00:49,297 adding 'jcvi/projects/ies.py' 2020-11-29T08:00:49,300 adding 'jcvi/projects/misc.py' 2020-11-29T08:00:49,304 adding 'jcvi/projects/napus.py' 2020-11-29T08:00:49,307 adding 'jcvi/projects/pineapple.py' 2020-11-29T08:00:49,308 adding 'jcvi/projects/pistachio.py' 2020-11-29T08:00:49,317 adding 'jcvi/projects/str.py' 2020-11-29T08:00:49,320 adding 'jcvi/projects/sugarcane.py' 2020-11-29T08:00:49,323 adding 'jcvi/projects/synfind.py' 2020-11-29T08:00:49,326 adding 'jcvi/projects/tgbs.py' 2020-11-29T08:00:49,329 adding 'jcvi/projects/vanilla.py' 2020-11-29T08:00:49,331 adding 'jcvi/utils/__init__.py' 2020-11-29T08:00:49,332 adding 'jcvi/utils/__main__.py' 2020-11-29T08:00:49,335 adding 'jcvi/utils/aws.py' 2020-11-29T08:00:49,337 adding 'jcvi/utils/brewer2mpl.py' 2020-11-29T08:00:49,340 adding 'jcvi/utils/cbook.py' 2020-11-29T08:00:49,342 adding 'jcvi/utils/counter.py' 2020-11-29T08:00:49,344 adding 'jcvi/utils/db.py' 2020-11-29T08:00:49,346 adding 'jcvi/utils/ez_setup.py' 2020-11-29T08:00:49,347 adding 'jcvi/utils/grouper.py' 2020-11-29T08:00:49,349 adding 'jcvi/utils/iter.py' 2020-11-29T08:00:49,351 adding 'jcvi/utils/natsort.py' 2020-11-29T08:00:49,353 adding 'jcvi/utils/orderedcollections.py' 2020-11-29T08:00:49,357 adding 'jcvi/utils/progressbar.py' 2020-11-29T08:00:49,360 adding 'jcvi/utils/range.py' 2020-11-29T08:00:49,361 adding 'jcvi/utils/table.py' 2020-11-29T08:00:49,363 adding 'jcvi/utils/taxonomy.py' 2020-11-29T08:00:49,367 adding 'jcvi/utils/webcolors.py' 2020-11-29T08:00:49,371 adding 'jcvi/utils/data/Airswing.ttf' 2020-11-29T08:00:49,388 adding 'jcvi/utils/data/Collegia.ttf' 2020-11-29T08:00:49,392 adding 'jcvi/utils/data/HookedUp.ttf' 2020-11-29T08:00:49,397 adding 'jcvi/utils/data/Humor-Sans.ttf' 2020-11-29T08:00:49,401 adding 'jcvi/utils/data/TREDs.meta.csv' 2020-11-29T08:00:49,402 adding 'jcvi/utils/data/__init__.py' 2020-11-29T08:00:49,403 adding 'jcvi/utils/data/adapters.fasta' 2020-11-29T08:00:49,405 adding 'jcvi/utils/data/blosum80.mat' 2020-11-29T08:00:49,407 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2020-11-29T08:00:49,412 adding 'jcvi/utils/data/colorbrewer_all_schemes.json' 2020-11-29T08:00:49,414 adding 'jcvi/utils/data/colorchecker.txt' 2020-11-29T08:00:49,420 adding 'jcvi/utils/data/hg38.band.txt' 2020-11-29T08:00:49,423 adding 'jcvi/utils/data/hg38.chrom.sizes' 2020-11-29T08:00:49,424 adding 'jcvi/utils/data/instance.json' 2020-11-29T08:00:49,426 adding 'jcvi/variation/__init__.py' 2020-11-29T08:00:49,427 adding 'jcvi/variation/__main__.py' 2020-11-29T08:00:49,432 adding 'jcvi/variation/cnv.py' 2020-11-29T08:00:49,434 adding 'jcvi/variation/deconvolute.py' 2020-11-29T08:00:49,436 adding 'jcvi/variation/delly.py' 2020-11-29T08:00:49,438 adding 'jcvi/variation/impute.py' 2020-11-29T08:00:49,440 adding 'jcvi/variation/phase.py' 2020-11-29T08:00:49,441 adding 'jcvi/variation/snp.py' 2020-11-29T08:00:49,448 adding 'jcvi/variation/str.py' 2020-11-29T08:00:49,450 adding 'jcvi/variation/tassel.py' 2020-11-29T08:00:49,452 adding 'jcvi-1.0.13.dist-info/LICENSE' 2020-11-29T08:00:49,454 adding 'jcvi-1.0.13.dist-info/METADATA' 2020-11-29T08:00:49,455 adding 'jcvi-1.0.13.dist-info/WHEEL' 2020-11-29T08:00:49,456 adding 'jcvi-1.0.13.dist-info/top_level.txt' 2020-11-29T08:00:49,458 adding 'jcvi-1.0.13.dist-info/RECORD' 2020-11-29T08:00:49,485 removing build/bdist.linux-armv7l/wheel 2020-11-29T08:00:49,810 Building wheel for jcvi (setup.py): finished with status 'done' 2020-11-29T08:00:49,828 Created wheel for jcvi: filename=jcvi-1.0.13-cp37-cp37m-linux_armv7l.whl size=1217228 sha256=f9dcc866e6a7285d9786e9678f2b433151002a638613ff9d2d09daf04949100a 2020-11-29T08:00:49,828 Stored in directory: /tmp/pip-ephem-wheel-cache-xjaqtjkc/wheels/ca/c3/36/b6d590cd1eff2e46666b4a458d384f0c4b9a15dc0573b2ac6b 2020-11-29T08:00:49,831 Successfully built jcvi 2020-11-29T08:00:49,880 Removed build tracker: '/tmp/pip-req-tracker-bjxcxuwm'