2020-12-01T10:08:51,313 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-12-01T10:08:52,001 Created temporary directory: /tmp/pip-ephem-wheel-cache-u5ywe8pv 2020-12-01T10:08:52,005 Created temporary directory: /tmp/pip-req-tracker-9l9jlpj0 2020-12-01T10:08:52,006 Initialized build tracking at /tmp/pip-req-tracker-9l9jlpj0 2020-12-01T10:08:52,007 Created build tracker: /tmp/pip-req-tracker-9l9jlpj0 2020-12-01T10:08:52,007 Entered build tracker: /tmp/pip-req-tracker-9l9jlpj0 2020-12-01T10:08:52,008 Created temporary directory: /tmp/pip-wheel-sk3_16gf 2020-12-01T10:08:52,028 1 location(s) to search for versions of sequana: 2020-12-01T10:08:52,028 * https://pypi.org/simple/sequana/ 2020-12-01T10:08:52,029 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2020-12-01T10:08:52,031 Getting page https://pypi.org/simple/sequana/ 2020-12-01T10:08:52,035 Found 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https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz#sha256=11c51f29d0d696451896fc56e940e059d191b6f17616776e08eb5b1c5ac5dda5 (from https://pypi.org/simple/sequana/), version: 0.8.2 2020-12-01T10:08:52,470 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz#sha256=4c47176589613a57227e742b9f31144f6714dad53078708baa4a3d1ea3a16994 (from https://pypi.org/simple/sequana/), version: 0.8.3 2020-12-01T10:08:52,471 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz#sha256=a11baec596d779f399512d3fe853ecdd582a16691880c495509d34d8cc66e2e7 (from https://pypi.org/simple/sequana/), version: 0.8.4 2020-12-01T10:08:52,472 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz#sha256=a1c0b4f766b774380d74c90cc4af7b6c222a2d1630c0be4a906fff8d796ffe08 (from https://pypi.org/simple/sequana/), version: 0.8.5 2020-12-01T10:08:52,473 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz#sha256=fa651ddd8a29046d6e5aec081ad30b8b0469b8e81fb2a59cf4d8bb20c4fe5a2f (from https://pypi.org/simple/sequana/), version: 0.8.6 2020-12-01T10:08:52,474 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 (from https://pypi.org/simple/sequana/), version: 0.9.0 2020-12-01T10:08:52,475 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2020-12-01T10:08:52,476 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2020-12-01T10:08:52,477 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2020-12-01T10:08:52,477 Found link https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 (from https://pypi.org/simple/sequana/), version: 0.9.4 2020-12-01T10:08:52,478 Found link https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff (from https://pypi.org/simple/sequana/), version: 0.9.5 2020-12-01T10:08:52,513 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2020-12-01T10:08:52,516 Using version 0.9.5 (newest of versions: 0.9.5) 2020-12-01T10:08:52,525 Collecting sequana==0.9.5 2020-12-01T10:08:52,530 Created temporary directory: /tmp/pip-unpack-vx0_5eet 2020-12-01T10:08:53,297 Downloading sequana-0.9.5.tar.gz (21.0 MB) 2020-12-01T10:09:07,993 Added sequana==0.9.5 from https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff to build tracker '/tmp/pip-req-tracker-9l9jlpj0' 2020-12-01T10:09:07,996 Running setup.py (path:/tmp/pip-wheel-sk3_16gf/sequana/setup.py) egg_info for package sequana 2020-12-01T10:09:07,997 Created temporary directory: /tmp/pip-pip-egg-info-247y9jkn 2020-12-01T10:09:07,998 Running command python setup.py egg_info 2020-12-01T10:09:10,757 running egg_info 2020-12-01T10:09:10,762 creating /tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info 2020-12-01T10:09:10,764 writing top-level names to /tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/top_level.txt 2020-12-01T10:09:10,769 writing dependency_links to /tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/dependency_links.txt 2020-12-01T10:09:10,771 writing /tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/PKG-INFO 2020-12-01T10:09:10,778 writing requirements to /tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/requires.txt 2020-12-01T10:09:10,782 writing entry points to /tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/entry_points.txt 2020-12-01T10:09:10,787 writing manifest file '/tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/SOURCES.txt' 2020-12-01T10:09:11,950 reading manifest file '/tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/SOURCES.txt' 2020-12-01T10:09:11,954 reading manifest template 'MANIFEST.in' 2020-12-01T10:09:11,961 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-12-01T10:09:11,966 warning: no previously-included files matching '*pyc' found under directory '*' 2020-12-01T10:09:12,814 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-12-01T10:09:12,817 warning: no previously-included files matching '*' found under directory 'test' 2020-12-01T10:09:12,820 warning: no previously-included files found matching 'sequana/rm2.py' 2020-12-01T10:09:12,877 writing manifest file '/tmp/pip-pip-egg-info-247y9jkn/sequana.egg-info/SOURCES.txt' 2020-12-01T10:09:13,017 Source in /tmp/pip-wheel-sk3_16gf/sequana has version 0.9.5, which satisfies requirement sequana==0.9.5 from https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff 2020-12-01T10:09:13,019 Removed sequana==0.9.5 from https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff from build tracker '/tmp/pip-req-tracker-9l9jlpj0' 2020-12-01T10:09:13,024 Building wheels for collected packages: sequana 2020-12-01T10:09:13,033 Created temporary directory: /tmp/pip-wheel-5k66wwhj 2020-12-01T10:09:13,034 Building wheel for sequana (setup.py): started 2020-12-01T10:09:13,035 Destination directory: /tmp/pip-wheel-5k66wwhj 2020-12-01T10:09:13,036 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-sk3_16gf/sequana/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-sk3_16gf/sequana/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5k66wwhj 2020-12-01T10:09:15,560 running bdist_wheel 2020-12-01T10:09:15,577 running build 2020-12-01T10:09:15,578 running build_py 2020-12-01T10:09:15,925 creating build 2020-12-01T10:09:15,926 creating build/lib 2020-12-01T10:09:15,927 creating build/lib/sequana 2020-12-01T10:09:15,930 copying sequana/demultiplex.py -> build/lib/sequana 2020-12-01T10:09:15,937 copying sequana/fasta.py -> build/lib/sequana 2020-12-01T10:09:15,943 copying sequana/kegg.py -> build/lib/sequana 2020-12-01T10:09:15,953 copying sequana/canu_scanner.py -> build/lib/sequana 2020-12-01T10:09:15,960 copying sequana/contigs.py -> build/lib/sequana 2020-12-01T10:09:15,969 copying sequana/running_median.py -> build/lib/sequana 2020-12-01T10:09:15,976 copying sequana/bedtools.py -> build/lib/sequana 2020-12-01T10:09:15,989 copying sequana/vcf_filter.py -> build/lib/sequana 2020-12-01T10:09:15,996 copying sequana/enrichment.py -> build/lib/sequana 2020-12-01T10:09:16,007 copying sequana/genbank.py -> build/lib/sequana 2020-12-01T10:09:16,014 copying sequana/expdesign.py -> build/lib/sequana 2020-12-01T10:09:16,020 copying sequana/mgi.py -> build/lib/sequana 2020-12-01T10:09:16,024 copying sequana/compare.py -> build/lib/sequana 2020-12-01T10:09:16,029 copying sequana/itol.py -> build/lib/sequana 2020-12-01T10:09:16,033 copying sequana/laa.py -> build/lib/sequana 2020-12-01T10:09:16,038 copying sequana/rnadiff.py -> build/lib/sequana 2020-12-01T10:09:16,046 copying sequana/salmon.py -> build/lib/sequana 2020-12-01T10:09:16,051 copying sequana/jsontool.py -> build/lib/sequana 2020-12-01T10:09:16,055 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2020-12-01T10:09:16,061 copying sequana/gtf.py -> build/lib/sequana 2020-12-01T10:09:16,067 copying sequana/snaketools.py -> build/lib/sequana 2020-12-01T10:09:16,080 copying sequana/kraken.py -> build/lib/sequana 2020-12-01T10:09:16,091 copying sequana/tools.py -> build/lib/sequana 2020-12-01T10:09:16,097 copying sequana/lazy.py -> build/lib/sequana 2020-12-01T10:09:16,101 copying sequana/gff3.py -> build/lib/sequana 2020-12-01T10:09:16,106 copying sequana/trf.py -> build/lib/sequana 2020-12-01T10:09:16,111 copying sequana/pipelines_common.py -> build/lib/sequana 2020-12-01T10:09:16,118 copying sequana/cnv.py -> build/lib/sequana 2020-12-01T10:09:16,124 copying sequana/kmer.py -> build/lib/sequana 2020-12-01T10:09:16,130 copying sequana/lazyimports.py -> build/lib/sequana 2020-12-01T10:09:16,136 copying sequana/errors.py -> build/lib/sequana 2020-12-01T10:09:16,141 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2020-12-01T10:09:16,148 copying sequana/coverage.py -> build/lib/sequana 2020-12-01T10:09:16,155 copying sequana/kraken_builder.py -> build/lib/sequana 2020-12-01T10:09:16,164 copying sequana/annotations.py -> build/lib/sequana 2020-12-01T10:09:16,169 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2020-12-01T10:09:16,176 copying sequana/stats.py -> build/lib/sequana 2020-12-01T10:09:16,182 copying sequana/vst.py -> build/lib/sequana 2020-12-01T10:09:16,188 copying sequana/sniffer.py -> build/lib/sequana 2020-12-01T10:09:16,193 copying sequana/bed.py -> build/lib/sequana 2020-12-01T10:09:16,200 copying sequana/taxonomy.py -> build/lib/sequana 2020-12-01T10:09:16,207 copying sequana/adapters.py -> build/lib/sequana 2020-12-01T10:09:16,216 copying sequana/criteria.py -> build/lib/sequana 2020-12-01T10:09:16,222 copying sequana/protein.py -> build/lib/sequana 2020-12-01T10:09:16,227 copying sequana/isoseq.py -> build/lib/sequana 2020-12-01T10:09:16,235 copying sequana/datatools.py -> build/lib/sequana 2020-12-01T10:09:16,241 copying sequana/busco.py -> build/lib/sequana 2020-12-01T10:09:16,247 copying sequana/misc.py -> build/lib/sequana 2020-12-01T10:09:16,251 copying sequana/__init__.py -> build/lib/sequana 2020-12-01T10:09:16,255 copying sequana/bamtools.py -> build/lib/sequana 2020-12-01T10:09:16,266 copying sequana/vcftools.py -> build/lib/sequana 2020-12-01T10:09:16,271 copying sequana/pacbio.py -> build/lib/sequana 2020-12-01T10:09:16,282 copying sequana/iuapc.py -> build/lib/sequana 2020-12-01T10:09:16,286 copying sequana/krona.py -> build/lib/sequana 2020-12-01T10:09:16,290 copying sequana/phred.py -> build/lib/sequana 2020-12-01T10:09:16,295 copying sequana/cpg_islands.py -> build/lib/sequana 2020-12-01T10:09:16,299 copying sequana/fastq.py -> build/lib/sequana 2020-12-01T10:09:16,309 copying sequana/cigar.py -> build/lib/sequana 2020-12-01T10:09:16,316 copying sequana/summary.py -> build/lib/sequana 2020-12-01T10:09:16,322 copying sequana/featurecounts.py -> build/lib/sequana 2020-12-01T10:09:16,329 copying sequana/sequence.py -> build/lib/sequana 2020-12-01T10:09:16,339 copying sequana/iem.py -> build/lib/sequana 2020-12-01T10:09:16,347 copying sequana/assembly.py -> build/lib/sequana 2020-12-01T10:09:16,355 copying sequana/snpeff.py -> build/lib/sequana 2020-12-01T10:09:16,363 copying sequana/find_motif.py -> build/lib/sequana 2020-12-01T10:09:16,369 copying sequana/fastqc.py -> build/lib/sequana 2020-12-01T10:09:16,375 copying sequana/databases.py -> build/lib/sequana 2020-12-01T10:09:16,382 copying sequana/iotools.py -> build/lib/sequana 2020-12-01T10:09:16,389 copying sequana/mixture.py -> build/lib/sequana 2020-12-01T10:09:16,396 copying sequana/mh.py -> build/lib/sequana 2020-12-01T10:09:16,407 creating build/lib/sequana/gui 2020-12-01T10:09:16,409 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2020-12-01T10:09:16,413 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2020-12-01T10:09:16,417 copying sequana/gui/about.py -> build/lib/sequana/gui 2020-12-01T10:09:16,421 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2020-12-01T10:09:16,432 copying sequana/gui/tools.py -> build/lib/sequana/gui 2020-12-01T10:09:16,439 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2020-12-01T10:09:16,446 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2020-12-01T10:09:16,452 copying sequana/gui/browser.py -> build/lib/sequana/gui 2020-12-01T10:09:16,459 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2020-12-01T10:09:16,465 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2020-12-01T10:09:16,478 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2020-12-01T10:09:16,485 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2020-12-01T10:09:16,492 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2020-12-01T10:09:16,497 copying sequana/gui/messages.py -> build/lib/sequana/gui 2020-12-01T10:09:16,502 copying sequana/gui/help.py -> build/lib/sequana/gui 2020-12-01T10:09:16,508 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2020-12-01T10:09:16,519 creating build/lib/sequana/rules 2020-12-01T10:09:16,521 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2020-12-01T10:09:16,531 creating build/lib/sequana/scripts 2020-12-01T10:09:16,534 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,540 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,545 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,550 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,556 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,562 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,570 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,577 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,583 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,589 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,596 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,604 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,611 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,617 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2020-12-01T10:09:16,625 creating build/lib/sequana/resources 2020-12-01T10:09:16,628 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2020-12-01T10:09:16,636 creating build/lib/sequana/multiqc 2020-12-01T10:09:16,639 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,646 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,652 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,656 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,661 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,666 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,671 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,676 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,683 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,690 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,695 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2020-12-01T10:09:16,705 creating build/lib/sequana/plots 2020-12-01T10:09:16,708 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2020-12-01T10:09:16,715 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2020-12-01T10:09:16,723 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2020-12-01T10:09:16,730 creating build/lib/sequana/pipelines 2020-12-01T10:09:16,732 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2020-12-01T10:09:16,743 creating build/lib/sequana/viz 2020-12-01T10:09:16,747 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2020-12-01T10:09:16,753 copying sequana/viz/mds.py -> build/lib/sequana/viz 2020-12-01T10:09:16,759 copying sequana/viz/pca.py -> build/lib/sequana/viz 2020-12-01T10:09:16,764 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2020-12-01T10:09:16,768 copying sequana/viz/venn.py -> build/lib/sequana/viz 2020-12-01T10:09:16,773 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2020-12-01T10:09:16,778 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2020-12-01T10:09:16,785 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2020-12-01T10:09:16,792 copying sequana/viz/anova.py -> build/lib/sequana/viz 2020-12-01T10:09:16,798 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2020-12-01T10:09:16,804 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2020-12-01T10:09:16,810 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2020-12-01T10:09:16,816 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2020-12-01T10:09:16,824 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2020-12-01T10:09:16,831 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2020-12-01T10:09:16,840 copying sequana/viz/core.py -> build/lib/sequana/viz 2020-12-01T10:09:16,846 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2020-12-01T10:09:16,851 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2020-12-01T10:09:16,862 creating build/lib/sequana/modules_report 2020-12-01T10:09:16,865 copying sequana/modules_report/enrichment.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,872 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,879 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,883 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,887 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,892 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,897 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,905 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,913 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,919 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,925 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,931 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,936 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,942 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,948 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,953 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,957 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,964 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2020-12-01T10:09:16,972 creating build/lib/sequana/sphinxext 2020-12-01T10:09:16,975 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2020-12-01T10:09:16,981 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2020-12-01T10:09:16,986 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2020-12-01T10:09:16,994 creating build/lib/sequana/utils 2020-12-01T10:09:16,996 copying sequana/utils/config.py -> build/lib/sequana/utils 2020-12-01T10:09:17,001 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2020-12-01T10:09:17,005 copying sequana/utils/tree.py -> build/lib/sequana/utils 2020-12-01T10:09:17,010 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2020-12-01T10:09:17,016 creating build/lib/sequana/rules/Taxonomy 2020-12-01T10:09:17,018 copying sequana/rules/Taxonomy/__init__.py -> build/lib/sequana/rules/Taxonomy 2020-12-01T10:09:17,024 creating build/lib/sequana/rules/Adapters 2020-12-01T10:09:17,027 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2020-12-01T10:09:17,033 creating build/lib/sequana/rules/codecs 2020-12-01T10:09:17,036 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2020-12-01T10:09:17,041 creating build/lib/sequana/rules/Assembly 2020-12-01T10:09:17,043 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2020-12-01T10:09:17,048 creating build/lib/sequana/rules/Pacbio 2020-12-01T10:09:17,049 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2020-12-01T10:09:17,054 creating build/lib/sequana/rules/SnpEff 2020-12-01T10:09:17,056 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2020-12-01T10:09:17,062 creating build/lib/sequana/rules/deeptools 2020-12-01T10:09:17,064 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2020-12-01T10:09:17,071 creating build/lib/sequana/rules/picard-tools 2020-12-01T10:09:17,073 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2020-12-01T10:09:17,080 creating build/lib/sequana/rules/sambamba 2020-12-01T10:09:17,083 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2020-12-01T10:09:17,090 creating build/lib/sequana/rules/Variant_caller 2020-12-01T10:09:17,092 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2020-12-01T10:09:17,099 creating build/lib/sequana/rules/idr 2020-12-01T10:09:17,101 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2020-12-01T10:09:17,106 creating build/lib/sequana/rules/Utils 2020-12-01T10:09:17,107 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2020-12-01T10:09:17,112 creating build/lib/sequana/resources/css 2020-12-01T10:09:17,114 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2020-12-01T10:09:17,119 creating build/lib/sequana/resources/data 2020-12-01T10:09:17,120 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2020-12-01T10:09:17,127 creating build/lib/sequana/resources/testing 2020-12-01T10:09:17,129 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2020-12-01T10:09:17,133 creating build/lib/sequana/resources/js 2020-12-01T10:09:17,135 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2020-12-01T10:09:17,139 creating build/lib/sequana/resources/snpeff 2020-12-01T10:09:17,141 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2020-12-01T10:09:17,148 creating build/lib/sequana/resources/images 2020-12-01T10:09:17,150 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2020-12-01T10:09:17,157 creating build/lib/sequana/resources/canvas 2020-12-01T10:09:17,159 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2020-12-01T10:09:17,164 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2020-12-01T10:09:17,169 creating build/lib/sequana/resources/busco 2020-12-01T10:09:17,170 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2020-12-01T10:09:17,175 creating build/lib/sequana/resources/templates 2020-12-01T10:09:17,177 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2020-12-01T10:09:17,182 creating build/lib/sequana/resources/data/adapters 2020-12-01T10:09:17,184 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:17,191 creating build/lib/sequana/resources/testing/rnadiff 2020-12-01T10:09:17,193 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2020-12-01T10:09:17,882 copying sequana/rules/README.rst -> build/lib/sequana/rules 2020-12-01T10:09:17,887 creating build/lib/sequana/rules/bwa_bam_to_fastq 2020-12-01T10:09:17,888 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2020-12-01T10:09:17,894 creating build/lib/sequana/rules/tophat_mapping 2020-12-01T10:09:17,896 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2020-12-01T10:09:17,901 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-12-01T10:09:17,903 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-12-01T10:09:17,909 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-12-01T10:09:17,911 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-12-01T10:09:17,918 creating build/lib/sequana/rules/igvtools 2020-12-01T10:09:17,921 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2020-12-01T10:09:17,928 creating build/lib/sequana/rules/bowtie2_index_dynamic 2020-12-01T10:09:17,931 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2020-12-01T10:09:17,938 creating build/lib/sequana/rules/quast 2020-12-01T10:09:17,940 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2020-12-01T10:09:17,948 creating build/lib/sequana/rules/SARTools 2020-12-01T10:09:17,950 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2020-12-01T10:09:17,957 creating build/lib/sequana/rules/preSARTools 2020-12-01T10:09:17,959 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2020-12-01T10:09:17,965 creating build/lib/sequana/rules/dag 2020-12-01T10:09:17,967 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2020-12-01T10:09:17,972 creating build/lib/sequana/rules/format_contigs 2020-12-01T10:09:17,975 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2020-12-01T10:09:17,982 creating build/lib/sequana/rules/fastqc_dynamic 2020-12-01T10:09:17,985 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2020-12-01T10:09:17,992 creating build/lib/sequana/rules/bwa_index 2020-12-01T10:09:17,995 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2020-12-01T10:09:17,1000 creating build/lib/sequana/rules/extract_fasta_from_bed 2020-12-01T10:09:18,002 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2020-12-01T10:09:18,007 creating build/lib/sequana/rules/feature_counts_dynamic 2020-12-01T10:09:18,009 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2020-12-01T10:09:18,015 creating build/lib/sequana/rules/indel_realigner 2020-12-01T10:09:18,018 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2020-12-01T10:09:18,025 creating build/lib/sequana/rules/multiqc2 2020-12-01T10:09:18,027 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2020-12-01T10:09:18,035 creating build/lib/sequana/rules/salmon_mapping 2020-12-01T10:09:18,037 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2020-12-01T10:09:18,042 creating build/lib/sequana/rules/bwa_mem_dynamic 2020-12-01T10:09:18,044 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2020-12-01T10:09:18,050 creating build/lib/sequana/rules/copy_multiple_files 2020-12-01T10:09:18,051 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2020-12-01T10:09:18,058 creating build/lib/sequana/rules/multiqc 2020-12-01T10:09:18,061 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2020-12-01T10:09:18,069 creating build/lib/sequana/rules/falco_dynamic 2020-12-01T10:09:18,071 copying sequana/rules/falco_dynamic/falco_dynamic.rules -> build/lib/sequana/rules/falco_dynamic 2020-12-01T10:09:18,078 creating build/lib/sequana/rules/bowtie1_index_dynamic 2020-12-01T10:09:18,081 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2020-12-01T10:09:18,088 creating build/lib/sequana/rules/miRNA_count_dynamic 2020-12-01T10:09:18,090 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2020-12-01T10:09:18,097 creating build/lib/sequana/rules/spikes_counting 2020-12-01T10:09:18,099 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2020-12-01T10:09:18,104 creating build/lib/sequana/rules/fastq_sampling 2020-12-01T10:09:18,106 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2020-12-01T10:09:18,112 creating build/lib/sequana/rules/prokka 2020-12-01T10:09:18,113 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2020-12-01T10:09:18,120 creating build/lib/sequana/rules/rnaseqc 2020-12-01T10:09:18,123 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2020-12-01T10:09:18,130 creating build/lib/sequana/rules/feature_counts 2020-12-01T10:09:18,133 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2020-12-01T10:09:18,140 creating build/lib/sequana/rules/sequana_coverage 2020-12-01T10:09:18,143 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2020-12-01T10:09:18,151 creating build/lib/sequana/rules/samtools_sort 2020-12-01T10:09:18,153 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2020-12-01T10:09:18,159 creating build/lib/sequana/rules/DupRadar 2020-12-01T10:09:18,161 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2020-12-01T10:09:18,167 creating build/lib/sequana/rules/bam_quality_filter 2020-12-01T10:09:18,169 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2020-12-01T10:09:18,174 creating build/lib/sequana/rules/rulegraph 2020-12-01T10:09:18,176 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2020-12-01T10:09:18,183 creating build/lib/sequana/rules/bed_to_gff 2020-12-01T10:09:18,186 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2020-12-01T10:09:18,192 creating build/lib/sequana/rules/digital_normalisation 2020-12-01T10:09:18,195 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2020-12-01T10:09:18,201 creating build/lib/sequana/rules/star_mapping 2020-12-01T10:09:18,202 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2020-12-01T10:09:18,208 creating build/lib/sequana/rules/mapping_analysis 2020-12-01T10:09:18,210 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2020-12-01T10:09:18,215 creating build/lib/sequana/rules/conda 2020-12-01T10:09:18,217 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2020-12-01T10:09:18,224 creating build/lib/sequana/rules/salmon_index 2020-12-01T10:09:18,227 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2020-12-01T10:09:18,234 creating build/lib/sequana/rules/chipuanar 2020-12-01T10:09:18,237 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2020-12-01T10:09:18,242 creating build/lib/sequana/rules/spp 2020-12-01T10:09:18,244 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2020-12-01T10:09:18,249 creating build/lib/sequana/rules/pacbio_quality 2020-12-01T10:09:18,251 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2020-12-01T10:09:18,256 creating build/lib/sequana/rules/star_index 2020-12-01T10:09:18,258 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2020-12-01T10:09:18,266 creating build/lib/sequana/rules/samtools_depth 2020-12-01T10:09:18,268 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2020-12-01T10:09:18,275 creating build/lib/sequana/rules/bam_analysis 2020-12-01T10:09:18,278 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2020-12-01T10:09:18,283 creating build/lib/sequana/rules/summary_pipeline 2020-12-01T10:09:18,285 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2020-12-01T10:09:18,290 creating build/lib/sequana/rules/fastq_stats_dynamic 2020-12-01T10:09:18,292 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2020-12-01T10:09:18,297 creating build/lib/sequana/rules/revcomp_rule 2020-12-01T10:09:18,299 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2020-12-01T10:09:18,306 creating build/lib/sequana/rules/remove_blacklist 2020-12-01T10:09:18,309 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2020-12-01T10:09:18,316 creating build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-12-01T10:09:18,318 copying sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-12-01T10:09:18,324 creating build/lib/sequana/rules/Taxonomy/fastq_screen 2020-12-01T10:09:18,326 copying sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen 2020-12-01T10:09:18,331 creating build/lib/sequana/rules/Adapters/identify_adapters 2020-12-01T10:09:18,333 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2020-12-01T10:09:18,338 creating build/lib/sequana/rules/Adapters/alien_trimmer 2020-12-01T10:09:18,341 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2020-12-01T10:09:18,348 creating build/lib/sequana/rules/Adapters/cutadapt 2020-12-01T10:09:18,350 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2020-12-01T10:09:18,359 creating build/lib/sequana/rules/Adapters/adapter_removal 2020-12-01T10:09:18,361 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2020-12-01T10:09:18,366 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2020-12-01T10:09:18,368 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2020-12-01T10:09:18,374 creating build/lib/sequana/rules/codecs/gz_to_bz2 2020-12-01T10:09:18,376 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2020-12-01T10:09:18,382 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-12-01T10:09:18,384 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-12-01T10:09:18,392 creating build/lib/sequana/rules/codecs/gz_to_fastq 2020-12-01T10:09:18,394 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2020-12-01T10:09:18,401 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-12-01T10:09:18,403 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-12-01T10:09:18,408 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-12-01T10:09:18,410 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-12-01T10:09:18,415 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2020-12-01T10:09:18,417 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2020-12-01T10:09:18,423 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-12-01T10:09:18,426 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-12-01T10:09:18,433 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2020-12-01T10:09:18,435 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2020-12-01T10:09:18,442 creating build/lib/sequana/rules/codecs/bam_to_fasta 2020-12-01T10:09:18,444 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2020-12-01T10:09:18,449 creating build/lib/sequana/rules/codecs/bz2_to_gz 2020-12-01T10:09:18,451 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2020-12-01T10:09:18,456 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2020-12-01T10:09:18,458 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2020-12-01T10:09:18,465 creating build/lib/sequana/rules/codecs/fastq_to_gz 2020-12-01T10:09:18,467 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2020-12-01T10:09:18,474 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2020-12-01T10:09:18,477 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2020-12-01T10:09:18,483 creating build/lib/sequana/rules/Assembly/busco_analysis 2020-12-01T10:09:18,486 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2020-12-01T10:09:18,491 creating build/lib/sequana/rules/Assembly/canu 2020-12-01T10:09:18,493 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2020-12-01T10:09:18,498 creating build/lib/sequana/rules/Assembly/busco 2020-12-01T10:09:18,500 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2020-12-01T10:09:18,507 creating build/lib/sequana/rules/Assembly/spades 2020-12-01T10:09:18,510 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2020-12-01T10:09:18,517 creating build/lib/sequana/rules/peak_calling 2020-12-01T10:09:18,518 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-12-01T10:09:18,522 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-12-01T10:09:18,528 creating build/lib/sequana/rules/multiqc/2.0 2020-12-01T10:09:18,529 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2020-12-01T10:09:18,535 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-12-01T10:09:18,537 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-12-01T10:09:18,542 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-12-01T10:09:18,545 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-12-01T10:09:18,552 creating build/lib/sequana/rules/deeptools/bamCoverage 2020-12-01T10:09:18,554 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2020-12-01T10:09:18,562 creating build/lib/sequana/rules/deeptools/plotCorrelation 2020-12-01T10:09:18,565 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2020-12-01T10:09:18,571 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-12-01T10:09:18,573 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-12-01T10:09:18,579 creating build/lib/sequana/rules/deeptools/multiBamSummary 2020-12-01T10:09:18,581 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2020-12-01T10:09:18,587 creating build/lib/sequana/rules/deeptools/plotCoverage 2020-12-01T10:09:18,590 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2020-12-01T10:09:18,597 creating build/lib/sequana/rules/picard-tools/add_read_group 2020-12-01T10:09:18,600 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2020-12-01T10:09:18,606 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-01T10:09:18,608 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-01T10:09:18,613 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-01T10:09:18,615 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-01T10:09:18,621 creating build/lib/sequana/rules/picard-tools/reorderSam 2020-12-01T10:09:18,623 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2020-12-01T10:09:18,630 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-01T10:09:18,633 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-01T10:09:18,640 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2020-12-01T10:09:18,642 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2020-12-01T10:09:18,649 creating build/lib/sequana/rules/sambamba/sambamba_filter 2020-12-01T10:09:18,651 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2020-12-01T10:09:18,657 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-01T10:09:18,660 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-01T10:09:18,667 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-01T10:09:18,669 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-01T10:09:18,677 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-01T10:09:18,679 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-01T10:09:18,687 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-12-01T10:09:18,689 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-12-01T10:09:18,694 creating build/lib/sequana/rules/Variant_caller/freebayes 2020-12-01T10:09:18,696 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2020-12-01T10:09:18,701 creating build/lib/sequana/rules/idr/preIDR_dynamic 2020-12-01T10:09:18,703 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2020-12-01T10:09:18,711 creating build/lib/sequana/rules/idr/stats_peakCalling 2020-12-01T10:09:18,713 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2020-12-01T10:09:18,721 creating build/lib/sequana/rules/idr/metrics_peaks 2020-12-01T10:09:18,724 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2020-12-01T10:09:18,730 creating build/lib/sequana/rules/idr/select_peaks 2020-12-01T10:09:18,732 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2020-12-01T10:09:18,737 creating build/lib/sequana/rules/idr/intersectionApproach 2020-12-01T10:09:18,739 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2020-12-01T10:09:18,745 creating build/lib/sequana/rules/idr/compute_idr 2020-12-01T10:09:18,747 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2020-12-01T10:09:18,754 creating build/lib/sequana/rules/idr/union_peaks 2020-12-01T10:09:18,756 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2020-12-01T10:09:18,763 creating build/lib/sequana/rules/Utils/dynamic_copy 2020-12-01T10:09:18,766 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2020-12-01T10:09:18,772 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-01T10:09:18,774 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-01T10:09:18,779 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2020-12-01T10:09:18,781 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2020-12-01T10:09:18,786 creating build/lib/sequana/rules/Taxonomy/kraken 2020-12-01T10:09:18,787 creating build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-12-01T10:09:18,791 copying sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-12-01T10:09:18,799 creating build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-12-01T10:09:18,802 copying sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-12-01T10:09:18,810 creating build/lib/sequana/rules/SnpEff/snpeff 2020-12-01T10:09:18,811 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-12-01T10:09:18,815 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-12-01T10:09:18,822 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-12-01T10:09:18,826 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-12-01T10:09:18,832 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-12-01T10:09:18,833 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-01T10:09:18,836 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-01T10:09:18,842 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-01T10:09:18,844 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-01T10:09:18,850 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2020-12-01T10:09:18,858 creating build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,861 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,869 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,875 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,880 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,888 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,895 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,902 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2020-12-01T10:09:18,909 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2020-12-01T10:09:18,917 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2020-12-01T10:09:18,935 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2020-12-01T10:09:18,942 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2020-12-01T10:09:18,951 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2020-12-01T10:09:18,958 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2020-12-01T10:09:18,963 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2020-12-01T10:09:18,970 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2020-12-01T10:09:18,985 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2020-12-01T10:09:18,993 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2020-12-01T10:09:19,003 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-01T10:09:19,021 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2020-12-01T10:09:19,029 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2020-12-01T10:09:19,116 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2020-12-01T10:09:19,145 copying sequana/resources/data/phiX174.fa.sa -> build/lib/sequana/resources/data 2020-12-01T10:09:19,153 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2020-12-01T10:09:19,160 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2020-12-01T10:09:19,169 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2020-12-01T10:09:19,174 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2020-12-01T10:09:19,183 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2020-12-01T10:09:19,190 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2020-12-01T10:09:19,197 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-01T10:09:19,642 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2020-12-01T10:09:19,698 copying sequana/resources/data/phiX174.fa.ann -> build/lib/sequana/resources/data 2020-12-01T10:09:19,705 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2020-12-01T10:09:19,712 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2020-12-01T10:09:19,718 copying sequana/resources/data/phiX174.fa.amb -> build/lib/sequana/resources/data 2020-12-01T10:09:19,724 copying sequana/resources/data/measles.fa.fai -> build/lib/sequana/resources/data 2020-12-01T10:09:19,731 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-01T10:09:19,749 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2020-12-01T10:09:19,757 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2020-12-01T10:09:19,763 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-01T10:09:20,218 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2020-12-01T10:09:20,256 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2020-12-01T10:09:20,271 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2020-12-01T10:09:20,316 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2020-12-01T10:09:20,327 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-01T10:09:20,347 copying sequana/resources/data/phiX174.fa.bwt -> build/lib/sequana/resources/data 2020-12-01T10:09:20,355 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2020-12-01T10:09:20,366 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2020-12-01T10:09:20,373 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2020-12-01T10:09:20,380 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2020-12-01T10:09:20,437 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-01T10:09:20,457 copying sequana/resources/data/phiX174.fa.pac -> build/lib/sequana/resources/data 2020-12-01T10:09:20,464 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2020-12-01T10:09:20,473 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,479 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,486 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,493 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,500 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,507 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,514 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,520 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,528 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,533 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,541 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,550 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,559 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,569 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,577 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,584 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,606 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,612 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,620 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,629 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,636 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,644 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,652 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,695 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,704 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,711 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,719 copying sequana/resources/testing/test_measles.bam.bai -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,726 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,734 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,745 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,752 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,759 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,773 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,787 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,798 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,839 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,848 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,857 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,865 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,873 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,881 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,889 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,897 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,906 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,922 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,929 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,939 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,946 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,982 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,988 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:20,996 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,007 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,018 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,033 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,041 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,052 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,061 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,080 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,086 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,129 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,136 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,142 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,149 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,154 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,159 copying sequana/resources/testing/test.fasta.fai -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,169 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,178 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,187 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,194 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,201 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,207 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,224 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,252 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,261 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,268 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,276 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,283 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,290 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,298 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,305 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,313 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,320 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,331 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,338 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,358 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,399 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,406 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,584 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,592 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,600 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,607 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,619 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,628 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2020-12-01T10:09:21,644 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,660 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,668 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,697 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,707 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,716 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,724 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,734 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,750 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,760 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,792 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,798 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,816 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2020-12-01T10:09:21,833 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2020-12-01T10:09:21,841 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2020-12-01T10:09:21,851 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2020-12-01T10:09:21,865 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2020-12-01T10:09:21,875 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2020-12-01T10:09:21,884 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2020-12-01T10:09:21,891 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2020-12-01T10:09:21,898 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2020-12-01T10:09:21,905 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2020-12-01T10:09:21,913 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,921 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,928 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,936 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,943 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,951 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,959 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,967 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,974 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,982 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,991 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:21,999 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,006 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,014 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,021 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,029 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,037 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,045 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,052 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,060 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,069 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,076 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,084 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,093 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,100 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,108 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,117 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,123 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,129 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,136 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,144 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-01T10:09:22,153 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-12-01T10:09:22,155 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-01T10:09:22,158 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-01T10:09:22,827 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-01T10:09:24,498 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-12-01T10:09:24,499 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-01T10:09:24,502 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-01T10:09:24,599 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-12-01T10:09:24,600 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-01T10:09:24,603 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-01T10:09:24,611 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-01T10:09:24,620 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-12-01T10:09:24,621 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-01T10:09:24,627 copying sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-01T10:09:24,905 installing to build/bdist.linux-armv7l/wheel 2020-12-01T10:09:24,906 running install 2020-12-01T10:09:24,910 running install_lib 2020-12-01T10:09:24,921 creating build/bdist.linux-armv7l 2020-12-01T10:09:24,921 creating build/bdist.linux-armv7l/wheel 2020-12-01T10:09:24,929 creating build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:24,931 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:24,938 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:24,947 creating build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,949 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,955 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,961 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,967 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,978 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,986 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,993 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:24,1000 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,006 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,012 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,025 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,031 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,037 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,041 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,047 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,053 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-01T10:09:25,060 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:25,070 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:25,075 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:25,081 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:25,088 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:25,101 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:25,107 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:25,122 creating build/bdist.linux-armv7l/wheel/sequana/rules 2020-12-01T10:09:25,126 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-12-01T10:09:25,130 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-12-01T10:09:25,139 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-12-01T10:09:25,143 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-12-01T10:09:25,145 copying build/lib/sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-12-01T10:09:25,151 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-12-01T10:09:25,153 copying build/lib/sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-12-01T10:09:25,159 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken 2020-12-01T10:09:25,162 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-12-01T10:09:25,166 copying build/lib/sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-12-01T10:09:25,174 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-12-01T10:09:25,176 copying build/lib/sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-12-01T10:09:25,183 copying build/lib/sequana/rules/Taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-12-01T10:09:25,189 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-12-01T10:09:25,193 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-12-01T10:09:25,197 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-12-01T10:09:25,204 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-12-01T10:09:25,206 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-12-01T10:09:25,210 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-12-01T10:09:25,215 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-12-01T10:09:25,217 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-12-01T10:09:25,224 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-12-01T10:09:25,227 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-12-01T10:09:25,235 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-12-01T10:09:25,238 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-12-01T10:09:25,244 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-12-01T10:09:25,246 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-12-01T10:09:25,252 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-12-01T10:09:25,254 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-12-01T10:09:25,261 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-12-01T10:09:25,265 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-12-01T10:09:25,268 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-12-01T10:09:25,276 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-12-01T10:09:25,278 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-12-01T10:09:25,285 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-12-01T10:09:25,287 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-12-01T10:09:25,293 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-12-01T10:09:25,295 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-12-01T10:09:25,301 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-12-01T10:09:25,303 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-12-01T10:09:25,311 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-12-01T10:09:25,314 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-12-01T10:09:25,323 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-12-01T10:09:25,325 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-12-01T10:09:25,331 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-12-01T10:09:25,333 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-12-01T10:09:25,339 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-12-01T10:09:25,340 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-12-01T10:09:25,348 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-12-01T10:09:25,350 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-12-01T10:09:25,358 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-12-01T10:09:25,361 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-12-01T10:09:25,366 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-12-01T10:09:25,371 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-12-01T10:09:25,373 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-12-01T10:09:25,379 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-12-01T10:09:25,381 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-12-01T10:09:25,388 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-12-01T10:09:25,390 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-12-01T10:09:25,398 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-12-01T10:09:25,401 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-12-01T10:09:25,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-12-01T10:09:25,409 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-12-01T10:09:25,415 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-12-01T10:09:25,417 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-12-01T10:09:25,424 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-12-01T10:09:25,426 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-12-01T10:09:25,434 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-12-01T10:09:25,437 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-12-01T10:09:25,445 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-12-01T10:09:25,447 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-12-01T10:09:25,453 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-12-01T10:09:25,455 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-12-01T10:09:25,461 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-12-01T10:09:25,464 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-12-01T10:09:25,468 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-12-01T10:09:25,475 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-12-01T10:09:25,478 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-12-01T10:09:25,487 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-12-01T10:09:25,488 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-12-01T10:09:25,494 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-12-01T10:09:25,496 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-12-01T10:09:25,501 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-12-01T10:09:25,507 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-12-01T10:09:25,509 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-12-01T10:09:25,518 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-12-01T10:09:25,520 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-12-01T10:09:25,527 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-12-01T10:09:25,529 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-12-01T10:09:25,535 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-12-01T10:09:25,537 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-12-01T10:09:25,544 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-12-01T10:09:25,545 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-12-01T10:09:25,553 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-12-01T10:09:25,557 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-12-01T10:09:25,566 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-12-01T10:09:25,569 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-12-01T10:09:25,576 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-12-01T10:09:25,578 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-12-01T10:09:25,584 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-12-01T10:09:25,586 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-12-01T10:09:25,593 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2020-12-01T10:09:25,597 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-12-01T10:09:25,600 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-12-01T10:09:25,608 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-12-01T10:09:25,610 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-12-01T10:09:25,616 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-12-01T10:09:25,618 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-12-01T10:09:25,624 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-12-01T10:09:25,625 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-12-01T10:09:25,633 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-12-01T10:09:25,638 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-12-01T10:09:25,641 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-12-01T10:09:25,649 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-12-01T10:09:25,650 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-12-01T10:09:25,656 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2020-12-01T10:09:25,659 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-12-01T10:09:25,662 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-12-01T10:09:25,668 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-12-01T10:09:25,670 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-12-01T10:09:25,677 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-12-01T10:09:25,684 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-12-01T10:09:25,689 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-01T10:09:25,692 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-01T10:09:25,699 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-01T10:09:25,701 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-01T10:09:25,708 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2020-12-01T10:09:25,710 copying build/lib/sequana/rules/falco_dynamic/falco_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2020-12-01T10:09:25,719 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-12-01T10:09:25,722 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-12-01T10:09:25,730 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-12-01T10:09:25,732 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-12-01T10:09:25,737 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-12-01T10:09:25,740 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-12-01T10:09:25,743 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-12-01T10:09:25,748 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-12-01T10:09:25,751 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-12-01T10:09:25,757 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-12-01T10:09:25,765 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-12-01T10:09:25,768 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-12-01T10:09:25,777 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-12-01T10:09:25,779 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-12-01T10:09:25,785 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-12-01T10:09:25,787 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-12-01T10:09:25,794 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-12-01T10:09:25,798 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-12-01T10:09:25,802 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-12-01T10:09:25,810 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-01T10:09:25,813 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-01T10:09:25,818 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-12-01T10:09:25,824 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-01T10:09:25,827 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-01T10:09:25,835 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-12-01T10:09:25,838 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-12-01T10:09:25,846 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-01T10:09:25,849 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-01T10:09:25,855 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-12-01T10:09:25,857 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-12-01T10:09:25,863 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-12-01T10:09:25,865 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-12-01T10:09:25,871 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-12-01T10:09:25,873 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-12-01T10:09:25,881 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-12-01T10:09:25,884 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-12-01T10:09:25,892 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-12-01T10:09:25,894 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-12-01T10:09:25,900 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-12-01T10:09:25,902 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-12-01T10:09:25,908 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-12-01T10:09:25,910 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-12-01T10:09:25,917 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-12-01T10:09:25,922 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-12-01T10:09:25,925 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-12-01T10:09:25,933 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-12-01T10:09:25,935 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-12-01T10:09:25,940 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-12-01T10:09:25,945 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-12-01T10:09:25,947 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-12-01T10:09:25,953 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-12-01T10:09:25,955 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-12-01T10:09:25,963 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-12-01T10:09:25,966 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-12-01T10:09:25,974 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-12-01T10:09:25,976 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-12-01T10:09:25,981 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-12-01T10:09:25,984 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-01T10:09:25,987 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-01T10:09:25,993 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-01T10:09:25,995 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-01T10:09:26,003 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-01T10:09:26,006 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-01T10:09:26,014 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-12-01T10:09:26,017 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-12-01T10:09:26,023 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-12-01T10:09:26,024 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-12-01T10:09:26,029 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-12-01T10:09:26,033 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-12-01T10:09:26,038 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-12-01T10:09:26,041 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-12-01T10:09:26,049 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-12-01T10:09:26,051 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-12-01T10:09:26,059 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-12-01T10:09:26,060 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-12-01T10:09:26,067 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-12-01T10:09:26,069 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-12-01T10:09:26,075 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-12-01T10:09:26,077 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-12-01T10:09:26,085 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-12-01T10:09:26,089 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-12-01T10:09:26,092 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-12-01T10:09:26,101 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-12-01T10:09:26,103 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-12-01T10:09:26,109 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-12-01T10:09:26,110 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-12-01T10:09:26,117 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-12-01T10:09:26,120 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-12-01T10:09:26,128 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-12-01T10:09:26,130 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-12-01T10:09:26,137 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-12-01T10:09:26,140 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-12-01T10:09:26,146 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-12-01T10:09:26,150 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-12-01T10:09:26,152 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-12-01T10:09:26,159 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-12-01T10:09:26,161 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-12-01T10:09:26,169 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-12-01T10:09:26,172 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-12-01T10:09:26,179 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2020-12-01T10:09:26,181 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2020-12-01T10:09:26,187 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-12-01T10:09:26,189 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-12-01T10:09:26,195 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-12-01T10:09:26,197 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-12-01T10:09:26,203 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-12-01T10:09:26,211 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-12-01T10:09:26,213 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-12-01T10:09:26,220 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-12-01T10:09:26,223 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-12-01T10:09:26,226 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-12-01T10:09:26,232 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-01T10:09:26,233 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-01T10:09:26,240 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-12-01T10:09:26,243 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-12-01T10:09:26,249 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-12-01T10:09:26,255 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-12-01T10:09:26,258 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-12-01T10:09:26,264 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-12-01T10:09:26,266 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-12-01T10:09:26,272 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-12-01T10:09:26,274 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-12-01T10:09:26,279 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-12-01T10:09:26,282 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-12-01T10:09:26,288 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,295 copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,302 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,306 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,312 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,316 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,322 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,332 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,340 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,342 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,347 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,352 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,356 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,361 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,367 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,374 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,381 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,386 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,389 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,395 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,401 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,408 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,413 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-01T10:09:26,420 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,425 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,430 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,435 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,447 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,459 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:26,469 creating build/bdist.linux-armv7l/wheel/sequana/resources 2020-12-01T10:09:26,473 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-01T10:09:26,476 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-01T10:09:26,483 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-01T10:09:26,502 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-01T10:09:26,508 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-01T10:09:26,515 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-01T10:09:26,522 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-01T10:09:26,530 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,533 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,541 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,551 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,568 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,574 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,660 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,689 copying build/lib/sequana/resources/data/phiX174.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,695 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,702 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,714 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,717 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,723 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,729 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,736 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,741 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,748 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,754 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,760 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,767 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,774 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,781 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,787 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,793 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,799 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,805 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,811 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,817 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,823 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,830 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,837 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,844 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,851 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,858 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,863 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,869 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,876 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,883 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,889 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,896 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,903 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,910 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,918 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-01T10:09:26,923 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,929 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,936 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,942 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:26,948 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,394 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,448 copying build/lib/sequana/resources/data/phiX174.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,454 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,461 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,468 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,481 copying build/lib/sequana/resources/data/phiX174.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,487 copying build/lib/sequana/resources/data/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,493 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,511 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,520 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,526 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:27,967 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,000 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,010 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,050 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,058 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,075 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,081 copying build/lib/sequana/resources/data/phiX174.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,087 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,096 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,101 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,108 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,114 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,167 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,183 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,189 copying build/lib/sequana/resources/data/phiX174.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,195 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-01T10:09:28,209 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,211 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,217 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,223 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,230 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,238 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,245 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,253 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,259 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,264 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,285 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,291 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,298 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,305 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,313 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,318 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,324 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,331 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,336 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,377 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,383 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,389 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,394 copying build/lib/sequana/resources/testing/test_measles.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,400 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,406 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,414 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,420 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,426 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,438 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,452 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,464 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,504 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,510 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,517 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,525 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,532 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,538 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,545 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,552 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,558 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,573 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,579 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,586 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,596 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,627 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,631 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:28,637 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-12-01T10:09:28,640 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-12-01T10:09:28,644 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-01T10:09:28,648 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-01T10:09:29,426 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-01T10:09:31,095 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-12-01T10:09:31,098 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-01T10:09:31,100 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-01T10:09:31,196 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-12-01T10:09:31,199 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-01T10:09:31,201 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-01T10:09:31,209 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-01T10:09:31,220 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-12-01T10:09:31,224 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-01T10:09:31,227 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-01T10:09:31,303 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-12-01T10:09:31,307 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,317 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,327 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,341 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,347 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,357 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,365 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,385 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,392 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,399 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,406 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,449 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,456 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,463 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,471 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,477 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,482 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,487 copying build/lib/sequana/resources/testing/test.fasta.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,492 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,499 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,508 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,515 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,520 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,525 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,530 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,549 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,572 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,577 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,583 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,589 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,595 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,600 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,606 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,612 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,618 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,625 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,631 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,640 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,646 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,664 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,704 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,710 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,780 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,786 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,792 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,799 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,804 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,815 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,823 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-01T10:09:31,840 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,843 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,858 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,865 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,894 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,903 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,910 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,915 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,922 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,937 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,945 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,975 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,981 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:31,986 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:32,000 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-01T10:09:32,018 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-12-01T10:09:32,021 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-12-01T10:09:32,030 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-12-01T10:09:32,037 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-01T10:09:32,039 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-01T10:09:32,047 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-01T10:09:32,052 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-01T10:09:32,062 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-01T10:09:32,070 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-12-01T10:09:32,073 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-12-01T10:09:32,079 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-12-01T10:09:32,086 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-12-01T10:09:32,089 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-12-01T10:09:32,095 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-12-01T10:09:32,100 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2020-12-01T10:09:32,107 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-01T10:09:32,109 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-01T10:09:32,116 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-01T10:09:32,121 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-01T10:09:32,126 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-01T10:09:32,132 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-01T10:09:32,139 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,145 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,153 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,160 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,170 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,176 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,183 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,190 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,196 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,203 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,210 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,218 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,220 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,226 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,233 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,239 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,245 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,252 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,259 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,265 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,271 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,277 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,282 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,286 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-01T10:09:32,294 copying build/lib/sequana/annotations.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,300 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,308 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,314 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,321 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,327 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,334 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,343 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,352 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,357 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,362 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,370 creating build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-01T10:09:32,373 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-01T10:09:32,380 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-01T10:09:32,387 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-01T10:09:32,393 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-12-01T10:09:32,396 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,398 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,403 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,408 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,413 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,421 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,427 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,432 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-01T10:09:32,436 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-12-01T10:09:32,440 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,445 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,450 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,457 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,463 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,474 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,478 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,487 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,493 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,499 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,506 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,512 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,521 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,527 creating build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,529 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,534 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,540 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,547 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,552 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,557 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,561 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,566 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,571 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,576 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,583 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,588 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,594 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,600 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,605 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,611 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,616 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,622 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-01T10:09:32,628 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,636 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,642 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,644 copying build/lib/sequana/modules_report/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,650 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,655 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,661 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,667 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,674 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,679 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,687 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,692 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,697 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,703 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,710 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,714 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,721 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,727 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,732 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,737 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,743 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-01T10:09:32,751 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-01T10:09:32,753 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-01T10:09:32,759 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-01T10:09:32,764 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-01T10:09:32,772 creating build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-01T10:09:32,774 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-01T10:09:32,780 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-01T10:09:32,785 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-01T10:09:32,791 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-01T10:09:32,799 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,809 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,816 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,822 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,828 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,834 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,839 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,847 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,853 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,861 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-01T10:09:32,867 running install_egg_info 2020-12-01T10:09:32,914 running egg_info 2020-12-01T10:09:32,917 writing entry points to sequana.egg-info/entry_points.txt 2020-12-01T10:09:32,920 writing top-level names to sequana.egg-info/top_level.txt 2020-12-01T10:09:32,922 writing sequana.egg-info/PKG-INFO 2020-12-01T10:09:32,927 writing dependency_links to sequana.egg-info/dependency_links.txt 2020-12-01T10:09:32,930 writing requirements to sequana.egg-info/requires.txt 2020-12-01T10:09:33,216 reading manifest file 'sequana.egg-info/SOURCES.txt' 2020-12-01T10:09:33,252 reading manifest template 'MANIFEST.in' 2020-12-01T10:09:33,261 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-12-01T10:09:33,269 warning: no previously-included files matching '*pyc' found under directory '*' 2020-12-01T10:09:35,928 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-12-01T10:09:35,934 warning: no previously-included files matching '*' found under directory 'test' 2020-12-01T10:09:35,940 warning: no previously-included files found matching 'sequana/rm2.py' 2020-12-01T10:09:36,032 writing manifest file 'sequana.egg-info/SOURCES.txt' 2020-12-01T10:09:36,038 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.9.5-py3.5.egg-info 2020-12-01T10:09:36,082 running install_scripts 2020-12-01T10:09:36,411 creating build/bdist.linux-armv7l/wheel/sequana-0.9.5.dist-info/WHEEL 2020-12-01T10:09:55,151 Building wheel for sequana (setup.py): finished with status 'done' 2020-12-01T10:09:55,508 Created wheel for sequana: filename=sequana-0.9.5-py3-none-any.whl size=21305451 sha256=a7b054c071f59f03ce6d4e5659c452cb60656f0398728417544674bcf915672f 2020-12-01T10:09:55,509 Stored in directory: /tmp/pip-ephem-wheel-cache-u5ywe8pv/wheels/6c/98/0e/3b136ac9d9bf0de2e8284987e5340511354f28f205db591758 2020-12-01T10:09:55,513 Successfully built sequana 2020-12-01T10:09:59,215 Removed build tracker: '/tmp/pip-req-tracker-9l9jlpj0'