2020-12-01T23:11:57,613 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-12-01T23:11:58,274 Created temporary directory: /tmp/pip-ephem-wheel-cache-w4pkaeyg
2020-12-01T23:11:58,278 Created temporary directory: /tmp/pip-req-tracker-zpoi28mk
2020-12-01T23:11:58,279 Initialized build tracking at /tmp/pip-req-tracker-zpoi28mk
2020-12-01T23:11:58,279 Created build tracker: /tmp/pip-req-tracker-zpoi28mk
2020-12-01T23:11:58,280 Entered build tracker: /tmp/pip-req-tracker-zpoi28mk
2020-12-01T23:11:58,281 Created temporary directory: /tmp/pip-wheel-hgq7x5w6
2020-12-01T23:11:58,294 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-12-01T23:11:58,297 2 location(s) to search for versions of novartis-pisces:
2020-12-01T23:11:58,297 * https://pypi.org/simple/novartis-pisces/
2020-12-01T23:11:58,297 * https://pypi.ngc.nvidia.com/novartis-pisces/
2020-12-01T23:11:58,298 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2020-12-01T23:11:58,299 Getting page https://pypi.org/simple/novartis-pisces/
2020-12-01T23:11:58,303 Found index url https://pypi.org/simple
2020-12-01T23:11:58,588   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2020-12-01T23:11:58,588 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/novartis-pisces/
2020-12-01T23:11:58,589 Getting page https://pypi.ngc.nvidia.com/novartis-pisces/
2020-12-01T23:11:58,592 Found index url https://pypi.ngc.nvidia.com
2020-12-01T23:11:59,582 Could not fetch URL https://pypi.ngc.nvidia.com/novartis-pisces/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/novartis-pisces/ - skipping
2020-12-01T23:11:59,598 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2020-12-01T23:11:59,601 Using version 0.1.1 (newest of versions: 0.1.1)
2020-12-01T23:11:59,609 Collecting novartis-pisces==0.1.1
2020-12-01T23:11:59,613   Created temporary directory: /tmp/pip-unpack-oi3m1_aw
2020-12-01T23:11:59,826   Downloading novartis-pisces-0.1.1.tar.gz (47 kB)
2020-12-01T23:11:59,974   Added novartis-pisces==0.1.1 from https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 to build tracker '/tmp/pip-req-tracker-zpoi28mk'
2020-12-01T23:11:59,976     Running setup.py (path:/tmp/pip-wheel-hgq7x5w6/novartis-pisces/setup.py) egg_info for package novartis-pisces
2020-12-01T23:11:59,978     Created temporary directory: /tmp/pip-pip-egg-info-ngsfw7u2
2020-12-01T23:11:59,978     Running command python setup.py egg_info
2020-12-01T23:12:02,364     running egg_info
2020-12-01T23:12:02,372     creating /tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info
2020-12-01T23:12:02,375     writing top-level names to /tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/top_level.txt
2020-12-01T23:12:02,376     writing /tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/PKG-INFO
2020-12-01T23:12:02,380     writing dependency_links to /tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/dependency_links.txt
2020-12-01T23:12:02,381     writing entry points to /tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/entry_points.txt
2020-12-01T23:12:02,384     writing requirements to /tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/requires.txt
2020-12-01T23:12:02,388     writing manifest file '/tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/SOURCES.txt'
2020-12-01T23:12:02,674     reading manifest file '/tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/SOURCES.txt'
2020-12-01T23:12:02,677     reading manifest template 'MANIFEST.in'
2020-12-01T23:12:02,692     writing manifest file '/tmp/pip-pip-egg-info-ngsfw7u2/novartis_pisces.egg-info/SOURCES.txt'
2020-12-01T23:12:02,836   Source in /tmp/pip-wheel-hgq7x5w6/novartis-pisces has version 0.1.1, which satisfies requirement novartis-pisces==0.1.1 from https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460
2020-12-01T23:12:02,838   Removed novartis-pisces==0.1.1 from https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 from build tracker '/tmp/pip-req-tracker-zpoi28mk'
2020-12-01T23:12:02,841 Building wheels for collected packages: novartis-pisces
2020-12-01T23:12:02,847   Created temporary directory: /tmp/pip-wheel-jabczksn
2020-12-01T23:12:02,848   Building wheel for novartis-pisces (setup.py): started
2020-12-01T23:12:02,849   Destination directory: /tmp/pip-wheel-jabczksn
2020-12-01T23:12:02,850   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hgq7x5w6/novartis-pisces/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hgq7x5w6/novartis-pisces/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jabczksn
2020-12-01T23:12:05,126   running bdist_wheel
2020-12-01T23:12:05,135   running build
2020-12-01T23:12:05,136   running build_py
2020-12-01T23:12:05,410   creating build
2020-12-01T23:12:05,411   creating build/lib
2020-12-01T23:12:05,413   creating build/lib/pisces
2020-12-01T23:12:05,416   copying pisces/index.py -> build/lib/pisces
2020-12-01T23:12:05,421   copying pisces/__init__.py -> build/lib/pisces
2020-12-01T23:12:05,426   copying pisces/run.py -> build/lib/pisces
2020-12-01T23:12:05,430   copying pisces/qc.py -> build/lib/pisces
2020-12-01T23:12:05,435   copying pisces/fastq.py -> build/lib/pisces
2020-12-01T23:12:05,439   copying pisces/cli.py -> build/lib/pisces
2020-12-01T23:12:05,444   copying pisces/submit.py -> build/lib/pisces
2020-12-01T23:12:05,448   running egg_info
2020-12-01T23:12:05,456   writing requirements to novartis_pisces.egg-info/requires.txt
2020-12-01T23:12:05,459   writing entry points to novartis_pisces.egg-info/entry_points.txt
2020-12-01T23:12:05,461   writing top-level names to novartis_pisces.egg-info/top_level.txt
2020-12-01T23:12:05,465   writing novartis_pisces.egg-info/PKG-INFO
2020-12-01T23:12:05,469   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2020-12-01T23:12:05,478   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2020-12-01T23:12:05,483   reading manifest template 'MANIFEST.in'
2020-12-01T23:12:05,499   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2020-12-01T23:12:05,504   copying pisces/config.json -> build/lib/pisces
2020-12-01T23:12:05,508   creating build/lib/pisces/R
2020-12-01T23:12:05,511   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2020-12-01T23:12:05,517   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2020-12-01T23:12:05,521   creating build/lib/pisces/data
2020-12-01T23:12:05,524   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2020-12-01T23:12:05,530   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2020-12-01T23:12:05,536   creating build/lib/pisces/scripts
2020-12-01T23:12:05,539   copying pisces/scripts/.DS_Store -> build/lib/pisces/scripts
2020-12-01T23:12:05,544   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2020-12-01T23:12:05,550   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2020-12-01T23:12:05,558   installing to build/bdist.linux-armv7l/wheel
2020-12-01T23:12:05,558   running install
2020-12-01T23:12:05,562   running install_lib
2020-12-01T23:12:05,570   creating build/bdist.linux-armv7l
2020-12-01T23:12:05,572   creating build/bdist.linux-armv7l/wheel
2020-12-01T23:12:05,575   creating build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,578   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,583   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,587   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,592   creating build/bdist.linux-armv7l/wheel/pisces/data
2020-12-01T23:12:05,595   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2020-12-01T23:12:05,600   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2020-12-01T23:12:05,607   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-01T23:12:05,609   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-01T23:12:05,615   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-01T23:12:05,620   copying build/lib/pisces/scripts/.DS_Store -> build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-01T23:12:05,625   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,629   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,634   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,639   creating build/bdist.linux-armv7l/wheel/pisces/R
2020-12-01T23:12:05,642   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2020-12-01T23:12:05,647   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2020-12-01T23:12:05,651   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,656   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-01T23:12:05,660   running install_egg_info
2020-12-01T23:12:05,666   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.1-py3.5.egg-info
2020-12-01T23:12:05,687   running install_scripts
2020-12-01T23:12:06,761   Installing salmon
2020-12-01T23:12:31,143   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.1.dist-info/WHEEL
2020-12-01T23:12:31,431   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2020-12-01T23:12:31,435   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.1-py3-none-any.whl size=52464 sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4
2020-12-01T23:12:31,436   Stored in directory: /tmp/pip-ephem-wheel-cache-w4pkaeyg/wheels/10/bc/07/146f3f7a3504b30cce855ab15013b6b4f66d578f29053d517e
2020-12-01T23:12:31,439 Successfully built novartis-pisces
2020-12-01T23:12:31,451 Removed build tracker: '/tmp/pip-req-tracker-zpoi28mk'