2020-12-02T00:50:41,046 Created temporary directory: /tmp/pip-ephem-wheel-cache-qo3d_a9m
2020-12-02T00:50:41,049 Created temporary directory: /tmp/pip-req-tracker-_af5qklx
2020-12-02T00:50:41,050 Initialized build tracking at /tmp/pip-req-tracker-_af5qklx
2020-12-02T00:50:41,050 Created build tracker: /tmp/pip-req-tracker-_af5qklx
2020-12-02T00:50:41,050 Entered build tracker: /tmp/pip-req-tracker-_af5qklx
2020-12-02T00:50:41,051 Created temporary directory: /tmp/pip-wheel-n_uk7hjd
2020-12-02T00:50:41,062 1 location(s) to search for versions of megalodon:
2020-12-02T00:50:41,062 * https://pypi.org/simple/megalodon/
2020-12-02T00:50:41,062 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/
2020-12-02T00:50:41,063 Getting page https://pypi.org/simple/megalodon/
2020-12-02T00:50:41,064 Found index url https://pypi.org/simple
2020-12-02T00:50:41,173   Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_14_x86_64: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,173   Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0
2020-12-02T00:50:41,174   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,174   Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0
2020-12-02T00:50:41,175   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,175   Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0
2020-12-02T00:50:41,175   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,175   Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0
2020-12-02T00:50:41,176   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,176   Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1
2020-12-02T00:50:41,177   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/23/94/863df7fd77e1944284db39b53c3cc1f70e0f8fcbf6986d2a88e6f4d580e8/megalodon-2.2.2-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=0d097cc1fef40f8687647b5b2762567b845af016da396720bdd831e205ee8a17 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,177   Found link https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b (from https://pypi.org/simple/megalodon/), version: 2.2.2
2020-12-02T00:50:41,177   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/45/a6/2823df05db649df59c68dd45cf096fbfbfc329ef1d0f7ebec4f8d9f22aba/megalodon-2.2.3-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=5d0a7ac3aa6682e765b65ccf21287f19adb13136c5bbf1df2261d3977ae8477d (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,178   Found link https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz#sha256=15da8761287df96251e08960fbf4bb1d1f2acc35ed8f824923845db78e3e1d90 (from https://pypi.org/simple/megalodon/), version: 2.2.3
2020-12-02T00:50:41,178   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/68/ae/04258dc7767930aa202d1bde4b85ab85d7198e309aeac9dd87022622feb2/megalodon-2.2.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bc8f2941db875a09c831c8f9430fbef8192827ace981eb64f7dd28d3a9ee6351 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,178   Found link https://files.pythonhosted.org/packages/f2/1a/4cbec97bcedb05c100398b752bccc14078a7bb7d72e4c3dd9adf96280818/megalodon-2.2.4.tar.gz#sha256=a882b2a388c82fdcc150de46f9dc10d5253afe7e44e419896ac1c5783b50531c (from https://pypi.org/simple/megalodon/), version: 2.2.4
2020-12-02T00:50:41,179   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/19/dd/f9468b176d7205983acd0815d8e5c8c261befeac8ada2b56b1ecb993bb68/megalodon-2.2.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d5997afe79945d93c64b6d7c9e43abec8e8ea6855b46d9310e591d6b80c1a1b4 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,179   Found link https://files.pythonhosted.org/packages/16/ae/a874438ab41e90ab0cef6dd27dacfdafde85d1e53919d16a6cf7179db5a0/megalodon-2.2.5.tar.gz#sha256=2e1d518defaabc15a1e95ace2738823cee1d6394066b4208527bb4d75bcf624a (from https://pypi.org/simple/megalodon/), version: 2.2.5
2020-12-02T00:50:41,179   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/a5/62/9b0b3ea25b343f382552662ebfe57635b614f8a2377ffd5023c211936cc1/megalodon-2.2.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=b6c509cd7e3cdf1577a133d1341b21be7ca2532da296b4be037c430f99244357 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,180   Found link https://files.pythonhosted.org/packages/e5/b2/d811ca419757cbba76ddc27bfa2d6737697ff84154452b854ed45bff00cd/megalodon-2.2.6.tar.gz#sha256=771c3a3c75ed77e5ff992ee351d7ae1b9098a9f9b0d5fd802a0dc3a917ebc309 (from https://pypi.org/simple/megalodon/), version: 2.2.6
2020-12-02T00:50:41,180   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/c9/b4/f5d093c9af006cf796dabdbc11c1e35d948f0614ded7d2287c59edf176f5/megalodon-2.2.7-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=39e7f53cf7edc33b9db185ad25d710fbb146f376c9b2a18e040532f3eabf6d22 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,180   Found link https://files.pythonhosted.org/packages/8f/3a/0dddaefaafd13b422c47b29b6eb8244e063cf1913a6c93bb266f81ba28b0/megalodon-2.2.7.tar.gz#sha256=1b94f36b0832e46a357fdeaa1dd69ba8fcc12db323fec92fc82099bec561e953 (from https://pypi.org/simple/megalodon/), version: 2.2.7
2020-12-02T00:50:41,181   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/1c/e2/aac960ece82b3ee2d1bf508bbad89b0322df7ee93867bff61eb08eea7d02/megalodon-2.2.8-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=4476551ac0b3e26f30ffc672b968364a20c70ddcde7aaecf1c35b774c0cb89f8 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,181   Found link https://files.pythonhosted.org/packages/96/ff/fbca07072116bded97faa95b3e612e51699f0f2b0f6bf3f8ceb4d517eb13/megalodon-2.2.8.tar.gz#sha256=19c1cfe3b538f426f7f0a3174350ab9670e7c6e9b7ed2a2567123663349300b1 (from https://pypi.org/simple/megalodon/), version: 2.2.8
2020-12-02T00:50:41,182   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/54/36/c04e7bca80b2e6c219622a5ac59624929bdf393917c6b22afb0b20cab5a2/megalodon-2.2.9-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2f0d2ec73f279389f8fe9e24996760d63bebdff2911ea1cb478bbd80980ff5f6 (from https://pypi.org/simple/megalodon/)
2020-12-02T00:50:41,182   Found link https://files.pythonhosted.org/packages/32/34/06e3789e13ba3a53aee81ad3c8cb68b1e9356530af8525ca0f68869d02eb/megalodon-2.2.9.tar.gz#sha256=355f8e110d34ce615a5a65cdca76b92e44acd6de80ea329c557c966a041a3dcd (from https://pypi.org/simple/megalodon/), version: 2.2.9
2020-12-02T00:50:41,184 Given no hashes to check 1 links for project 'megalodon': discarding no candidates
2020-12-02T00:50:41,185 Using version 2.2.9 (newest of versions: 2.2.9)
2020-12-02T00:50:41,189 Collecting megalodon==2.2.9
2020-12-02T00:50:41,191   Created temporary directory: /tmp/pip-unpack-55sx_lmr
2020-12-02T00:50:41,302   Downloading megalodon-2.2.9.tar.gz (8.1 MB)
2020-12-02T00:50:43,178   Added megalodon==2.2.9 from https://files.pythonhosted.org/packages/32/34/06e3789e13ba3a53aee81ad3c8cb68b1e9356530af8525ca0f68869d02eb/megalodon-2.2.9.tar.gz#sha256=355f8e110d34ce615a5a65cdca76b92e44acd6de80ea329c557c966a041a3dcd to build tracker '/tmp/pip-req-tracker-_af5qklx'
2020-12-02T00:50:43,179     Running setup.py (path:/tmp/pip-wheel-n_uk7hjd/megalodon/setup.py) egg_info for package megalodon
2020-12-02T00:50:43,180     Created temporary directory: /tmp/pip-pip-egg-info-djsmm_77
2020-12-02T00:50:43,180     Running command python setup.py egg_info
2020-12-02T00:50:44,440     running egg_info
2020-12-02T00:50:44,443     creating /tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info
2020-12-02T00:50:44,444     writing /tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/PKG-INFO
2020-12-02T00:50:44,448     writing dependency_links to /tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/dependency_links.txt
2020-12-02T00:50:44,450     writing entry points to /tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/entry_points.txt
2020-12-02T00:50:44,451     writing requirements to /tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/requires.txt
2020-12-02T00:50:44,452     writing top-level names to /tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/top_level.txt
2020-12-02T00:50:44,454     writing manifest file '/tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/SOURCES.txt'
2020-12-02T00:50:44,835     reading manifest file '/tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/SOURCES.txt'
2020-12-02T00:50:44,837     reading manifest template 'MANIFEST.in'
2020-12-02T00:50:44,844     writing manifest file '/tmp/pip-pip-egg-info-djsmm_77/megalodon.egg-info/SOURCES.txt'
2020-12-02T00:50:44,945   Source in /tmp/pip-wheel-n_uk7hjd/megalodon has version 2.2.9, which satisfies requirement megalodon==2.2.9 from https://files.pythonhosted.org/packages/32/34/06e3789e13ba3a53aee81ad3c8cb68b1e9356530af8525ca0f68869d02eb/megalodon-2.2.9.tar.gz#sha256=355f8e110d34ce615a5a65cdca76b92e44acd6de80ea329c557c966a041a3dcd
2020-12-02T00:50:44,946   Removed megalodon==2.2.9 from https://files.pythonhosted.org/packages/32/34/06e3789e13ba3a53aee81ad3c8cb68b1e9356530af8525ca0f68869d02eb/megalodon-2.2.9.tar.gz#sha256=355f8e110d34ce615a5a65cdca76b92e44acd6de80ea329c557c966a041a3dcd from build tracker '/tmp/pip-req-tracker-_af5qklx'
2020-12-02T00:50:44,950 Building wheels for collected packages: megalodon
2020-12-02T00:50:44,954   Created temporary directory: /tmp/pip-wheel-ncuc8l1e
2020-12-02T00:50:44,955   Building wheel for megalodon (setup.py): started
2020-12-02T00:50:44,955   Destination directory: /tmp/pip-wheel-ncuc8l1e
2020-12-02T00:50:44,955   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-n_uk7hjd/megalodon/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-n_uk7hjd/megalodon/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ncuc8l1e
2020-12-02T00:50:46,169   running bdist_wheel
2020-12-02T00:50:46,175   running build
2020-12-02T00:50:46,176   running build_py
2020-12-02T00:50:46,303   creating build
2020-12-02T00:50:46,303   creating build/lib.linux-armv7l-3.7
2020-12-02T00:50:46,304   creating build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,305   copying megalodon/variants.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,310   copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,312   copying megalodon/mods.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,316   copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,319   copying megalodon/__init__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,320   copying megalodon/__main__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,323   copying megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,326   copying megalodon/backends.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,330   copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,333   copying megalodon/logging.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,335   copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,339   copying megalodon/_version.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,341   copying megalodon/calibration.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,344   copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,347   copying megalodon/mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-12-02T00:50:46,353   creating build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,354   copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,357   copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,359   copying megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,362   copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,364   copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,366   copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,369   copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,372   copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,374   copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,376   copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,379   copying megalodon_extras/calibrate_merge_modified_bases_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,381   copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,384   copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,386   copying megalodon_extras/modified_bases_create_motif_bed.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,388   copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,391   copying megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,393   copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,396   copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,399   copying megalodon_extras/merge_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,401   copying megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,403   copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,405   copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,408   copying megalodon_extras/modified_bases_per_site_thresholds.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,411   copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,413   copying megalodon_extras/calibrate_generate_mod_stats_from_msf.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,416   copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,418   copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,420   copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,422   copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,426   copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,428   copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,430   copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,432   copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,434   copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-12-02T00:50:46,453   creating build/lib.linux-armv7l-3.7/megalodon/model_data
2020-12-02T00:50:46,453   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-12-02T00:50:46,455   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-12-02T00:50:46,464   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-12-02T00:50:46,491   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-12-02T00:50:46,492   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-12-02T00:50:46,500   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-12-02T00:50:46,531   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg
2020-12-02T00:50:46,532   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg
2020-12-02T00:50:46,537   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg
2020-12-02T00:50:46,541   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:50:46,542   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:50:46,551   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:50:46,557   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:50:46,585   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:50:46,592   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:50:46,593   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:50:46,601   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:50:46,610   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:50:46,642   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:50:46,652   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-12-02T00:50:46,653   copying megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-12-02T00:50:46,657   copying megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-12-02T00:50:46,660   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:50:46,661   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:50:46,670   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:50:46,675   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:50:46,704   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:50:46,712   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-12-02T00:50:46,712   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-12-02T00:50:46,716   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-12-02T00:50:46,719   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-12-02T00:50:46,720   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-12-02T00:50:46,728   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-12-02T00:50:46,760   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-12-02T00:50:46,761   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-12-02T00:50:46,769   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-12-02T00:50:46,801   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:46,802   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:46,812   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:46,816   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:46,852   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:46,854   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-12-02T00:50:46,855   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-12-02T00:50:46,861   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-12-02T00:50:46,883   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:50:46,884   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:50:46,891   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:50:46,897   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:50:46,924   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:50:46,928   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-12-02T00:50:46,929   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-12-02T00:50:46,936   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-12-02T00:50:46,965   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-12-02T00:50:46,966   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-12-02T00:50:46,973   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-12-02T00:50:47,001   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-12-02T00:50:47,002   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-12-02T00:50:47,010   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-12-02T00:50:47,030   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-12-02T00:50:47,031   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-12-02T00:50:47,035   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-12-02T00:50:47,038   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:47,039   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:47,046   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:47,050   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:47,082   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:50:47,088   running build_ext
2020-12-02T00:50:47,292   cythoning megalodon/_decode.pyx to megalodon/_decode.c
2020-12-02T00:50:49,589   building 'megalodon.decode' extension
2020-12-02T00:50:49,590   creating build/temp.linux-armv7l-3.7
2020-12-02T00:50:49,590   creating build/temp.linux-armv7l-3.7/megalodon
2020-12-02T00:50:49,591   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c megalodon/_decode.c -o build/temp.linux-armv7l-3.7/megalodon/_decode.o -std=c99
2020-12-02T00:50:49,983   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-12-02T00:50:49,983                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-12-02T00:50:49,983                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-12-02T00:50:49,984                    from megalodon/_decode.c:612:
2020-12-02T00:50:49,984   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-12-02T00:50:49,984    #warning "Using deprecated NumPy API, disable it with " \
2020-12-02T00:50:49,984     ^~~~~~~
2020-12-02T00:50:59,958   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/megalodon/_decode.o -o build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so
2020-12-02T00:51:00,132   installing to build/bdist.linux-armv7l/wheel
2020-12-02T00:51:00,132   running install
2020-12-02T00:51:00,133   running install_lib
2020-12-02T00:51:00,138   creating build/bdist.linux-armv7l
2020-12-02T00:51:00,138   creating build/bdist.linux-armv7l/wheel
2020-12-02T00:51:00,141   creating build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,142   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,145   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,148   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,150   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,153   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,155   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,158   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,161   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,164   copying build/lib.linux-armv7l-3.7/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,166   copying build/lib.linux-armv7l-3.7/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,169   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,171   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,189   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,191   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_motif_bed.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,194   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,197   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,199   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,202   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,204   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,206   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,208   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,211   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,213   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_per_site_thresholds.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,216   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,218   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_mod_stats_from_msf.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,221   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,224   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,226   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,229   copying build/lib.linux-armv7l-3.7/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,233   copying build/lib.linux-armv7l-3.7/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,235   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,238   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,240   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,243   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-12-02T00:51:00,247   creating build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,248   copying build/lib.linux-armv7l-3.7/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,254   copying build/lib.linux-armv7l-3.7/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,257   copying build/lib.linux-armv7l-3.7/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,263   copying build/lib.linux-armv7l-3.7/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,265   copying build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,283   copying build/lib.linux-armv7l-3.7/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,285   copying build/lib.linux-armv7l-3.7/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,288   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,290   copying build/lib.linux-armv7l-3.7/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,295   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,299   copying build/lib.linux-armv7l-3.7/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,301   copying build/lib.linux-armv7l-3.7/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,305   copying build/lib.linux-armv7l-3.7/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,308   creating build/bdist.linux-armv7l/wheel/megalodon/model_data
2020-12-02T00:51:00,310   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-12-02T00:51:00,311   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-12-02T00:51:00,319   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-12-02T00:51:00,343   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-12-02T00:51:00,344   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-12-02T00:51:00,353   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-12-02T00:51:00,382   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg
2020-12-02T00:51:00,383   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg
2020-12-02T00:51:00,388   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg
2020-12-02T00:51:00,392   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:51:00,393   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:51:00,400   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:51:00,405   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:51:00,431   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-12-02T00:51:00,439   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:51:00,440   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:51:00,448   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:51:00,453   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:51:00,486   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-12-02T00:51:00,495   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-12-02T00:51:00,497   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-12-02T00:51:00,502   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg
2020-12-02T00:51:00,506   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:51:00,508   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:51:00,517   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:51:00,524   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:51:00,562   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-12-02T00:51:00,575   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-12-02T00:51:00,576   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-12-02T00:51:00,580   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg
2020-12-02T00:51:00,584   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-12-02T00:51:00,586   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-12-02T00:51:00,595   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-12-02T00:51:00,630   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-12-02T00:51:00,631   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-12-02T00:51:00,639   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-12-02T00:51:00,668   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,669   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,678   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,682   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,709   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,713   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-12-02T00:51:00,714   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-12-02T00:51:00,721   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-12-02T00:51:00,747   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:51:00,748   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:51:00,755   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:51:00,760   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:51:00,790   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-12-02T00:51:00,795   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-12-02T00:51:00,796   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-12-02T00:51:00,804   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-12-02T00:51:00,833   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-12-02T00:51:00,834   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-12-02T00:51:00,841   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-12-02T00:51:00,872   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-12-02T00:51:00,873   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-12-02T00:51:00,881   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-12-02T00:51:00,907   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-12-02T00:51:00,908   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-12-02T00:51:00,911   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg
2020-12-02T00:51:00,915   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,915   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,923   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,927   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,951   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-12-02T00:51:00,954   copying build/lib.linux-armv7l-3.7/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,959   copying build/lib.linux-armv7l-3.7/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,961   copying build/lib.linux-armv7l-3.7/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-12-02T00:51:00,963   running install_egg_info
2020-12-02T00:51:00,986   running egg_info
2020-12-02T00:51:00,986   writing megalodon.egg-info/PKG-INFO
2020-12-02T00:51:00,989   writing dependency_links to megalodon.egg-info/dependency_links.txt
2020-12-02T00:51:00,991   writing entry points to megalodon.egg-info/entry_points.txt
2020-12-02T00:51:00,993   writing requirements to megalodon.egg-info/requires.txt
2020-12-02T00:51:00,994   writing top-level names to megalodon.egg-info/top_level.txt
2020-12-02T00:51:01,022   reading manifest file 'megalodon.egg-info/SOURCES.txt'
2020-12-02T00:51:01,028   reading manifest template 'MANIFEST.in'
2020-12-02T00:51:01,040   writing manifest file 'megalodon.egg-info/SOURCES.txt'
2020-12-02T00:51:01,042   Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.2.9-py3.7.egg-info
2020-12-02T00:51:01,059   running install_scripts
2020-12-02T00:51:01,129   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2020-12-02T00:51:01,136   creating build/bdist.linux-armv7l/wheel/megalodon-2.2.9.dist-info/WHEEL
2020-12-02T00:51:01,139   creating '/tmp/pip-wheel-ncuc8l1e/megalodon-2.2.9-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-12-02T00:51:01,141   adding 'megalodon/__init__.py'
2020-12-02T00:51:01,144   adding 'megalodon/__main__.py'
2020-12-02T00:51:01,145   adding 'megalodon/_version.py'
2020-12-02T00:51:01,148   adding 'megalodon/aggregate.py'
2020-12-02T00:51:01,154   adding 'megalodon/backends.py'
2020-12-02T00:51:01,157   adding 'megalodon/calibration.py'
2020-12-02T00:51:01,273   adding 'megalodon/decode.cpython-37m-arm-linux-gnueabihf.so'
2020-12-02T00:51:01,279   adding 'megalodon/fast5_io.py'
2020-12-02T00:51:01,280   adding 'megalodon/logging.py'
2020-12-02T00:51:01,282   adding 'megalodon/mapping.py'
2020-12-02T00:51:01,289   adding 'megalodon/megalodon.py'
2020-12-02T00:51:01,294   adding 'megalodon/megalodon_helper.py'
2020-12-02T00:51:01,296   adding 'megalodon/megalodon_multiprocessing.py'
2020-12-02T00:51:01,307   adding 'megalodon/mods.py'
2020-12-02T00:51:01,309   adding 'megalodon/signal_mapping.py'
2020-12-02T00:51:01,319   adding 'megalodon/variants.py'
2020-12-02T00:51:01,381   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,408   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,458   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,486   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,533   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,561   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,614   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,643   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,705   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,733   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,790   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,818   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,881   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,909   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,959   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:01,987   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:01,997   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,018   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,077   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:02,106   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:02,116   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,137   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,193   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:02,222   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:02,229   adding 'megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,232   adding 'megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,238   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,242   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,287   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:02,315   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:02,324   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,345   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,399   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:02,425   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:02,436   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,440   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,445   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,448   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,493   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:02,520   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:02,525   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,528   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,532   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,535   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,578   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz'
2020-12-02T00:51:02,605   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf'
2020-12-02T00:51:02,615   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz'
2020-12-02T00:51:02,618   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.pdf'
2020-12-02T00:51:02,621   adding 'megalodon_extras/__init__.py'
2020-12-02T00:51:02,623   adding 'megalodon_extras/__main__.py'
2020-12-02T00:51:02,627   adding 'megalodon_extras/_extras_parsers.py'
2020-12-02T00:51:02,629   adding 'megalodon_extras/aggregate_run.py'
2020-12-02T00:51:02,631   adding 'megalodon_extras/calibrate_generate_mod_stats_from_msf.py'
2020-12-02T00:51:02,633   adding 'megalodon_extras/calibrate_generate_modified_base_stats.py'
2020-12-02T00:51:02,635   adding 'megalodon_extras/calibrate_generate_variant_stats.py'
2020-12-02T00:51:02,637   adding 'megalodon_extras/calibrate_merge_modified_bases.py'
2020-12-02T00:51:02,638   adding 'megalodon_extras/calibrate_merge_modified_bases_stats.py'
2020-12-02T00:51:02,640   adding 'megalodon_extras/calibrate_modified_bases.py'
2020-12-02T00:51:02,642   adding 'megalodon_extras/calibrate_variants.py'
2020-12-02T00:51:02,643   adding 'megalodon_extras/merge_aggregated_modified_bases.py'
2020-12-02T00:51:02,645   adding 'megalodon_extras/merge_modified_bases.py'
2020-12-02T00:51:02,647   adding 'megalodon_extras/merge_variants.py'
2020-12-02T00:51:02,648   adding 'megalodon_extras/modified_bases_create_ground_truth.py'
2020-12-02T00:51:02,649   adding 'megalodon_extras/modified_bases_create_motif_bed.py'
2020-12-02T00:51:02,650   adding 'megalodon_extras/modified_bases_describe_alphabet.py'
2020-12-02T00:51:02,652   adding 'megalodon_extras/modified_bases_estimate_threshold.py'
2020-12-02T00:51:02,653   adding 'megalodon_extras/modified_bases_index_database.py'
2020-12-02T00:51:02,655   adding 'megalodon_extras/modified_bases_per_site_thresholds.py'
2020-12-02T00:51:02,656   adding 'megalodon_extras/modified_bases_split_by_motif.py'
2020-12-02T00:51:02,658   adding 'megalodon_extras/modified_bases_update_database.py'
2020-12-02T00:51:02,659   adding 'megalodon_extras/per_read_text_modified_bases.py'
2020-12-02T00:51:02,660   adding 'megalodon_extras/per_read_text_variants.py'
2020-12-02T00:51:02,661   adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py'
2020-12-02T00:51:02,663   adding 'megalodon_extras/phase_variants_merge_haploid_variants.py'
2020-12-02T00:51:02,665   adding 'megalodon_extras/phase_variants_whatshap_filter.py'
2020-12-02T00:51:02,667   adding 'megalodon_extras/validate_aggregated_modified_bases.py'
2020-12-02T00:51:02,669   adding 'megalodon_extras/validate_compare_modified_bases.py'
2020-12-02T00:51:02,671   adding 'megalodon_extras/validate_results.py'
2020-12-02T00:51:02,673   adding 'megalodon_extras/variants_atomize.py'
2020-12-02T00:51:02,674   adding 'megalodon_extras/variants_heterozygous_factor.py'
2020-12-02T00:51:02,676   adding 'megalodon_extras/variants_index_database.py'
2020-12-02T00:51:02,678   adding 'megalodon_extras/variants_resolve.py'
2020-12-02T00:51:02,680   adding 'megalodon-2.2.9.dist-info/LICENCE.txt'
2020-12-02T00:51:02,682   adding 'megalodon-2.2.9.dist-info/METADATA'
2020-12-02T00:51:02,684   adding 'megalodon-2.2.9.dist-info/WHEEL'
2020-12-02T00:51:02,684   adding 'megalodon-2.2.9.dist-info/entry_points.txt'
2020-12-02T00:51:02,685   adding 'megalodon-2.2.9.dist-info/top_level.txt'
2020-12-02T00:51:02,687   adding 'megalodon-2.2.9.dist-info/RECORD'
2020-12-02T00:51:02,838   removing build/bdist.linux-armv7l/wheel
2020-12-02T00:51:03,156   Building wheel for megalodon (setup.py): finished with status 'done'
2020-12-02T00:51:03,251   Created wheel for megalodon: filename=megalodon-2.2.9-cp37-cp37m-linux_armv7l.whl size=8310952 sha256=70d874b1d6e6b81753c6ee1ff8287fd064c6ccfba54a9564c56b89b15b60b7d3
2020-12-02T00:51:03,251   Stored in directory: /tmp/pip-ephem-wheel-cache-qo3d_a9m/wheels/7c/2b/bf/bc8d09ddb74464323dc93a1f018a46d4b94d99ef969d0a3f26
2020-12-02T00:51:03,253 Successfully built megalodon
2020-12-02T00:51:03,525 Removed build tracker: '/tmp/pip-req-tracker-_af5qklx'