2020-12-08T21:33:36,169 Created temporary directory: /tmp/pip-ephem-wheel-cache-xe4avzkv
2020-12-08T21:33:36,172 Created temporary directory: /tmp/pip-req-tracker-5g3yh5hd
2020-12-08T21:33:36,172 Initialized build tracking at /tmp/pip-req-tracker-5g3yh5hd
2020-12-08T21:33:36,172 Created build tracker: /tmp/pip-req-tracker-5g3yh5hd
2020-12-08T21:33:36,173 Entered build tracker: /tmp/pip-req-tracker-5g3yh5hd
2020-12-08T21:33:36,173 Created temporary directory: /tmp/pip-wheel-_8fpond5
2020-12-08T21:33:36,185 1 location(s) to search for versions of novartis-pisces:
2020-12-08T21:33:36,185 * https://pypi.org/simple/novartis-pisces/
2020-12-08T21:33:36,185 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2020-12-08T21:33:36,186 Getting page https://pypi.org/simple/novartis-pisces/
2020-12-08T21:33:36,187 Found index url https://pypi.org/simple
2020-12-08T21:33:36,551   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2020-12-08T21:33:36,552   Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2
2020-12-08T21:33:36,556 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2020-12-08T21:33:36,557 Using version 0.1.2 (newest of versions: 0.1.2)
2020-12-08T21:33:36,560 Collecting novartis-pisces==0.1.2
2020-12-08T21:33:36,562   Created temporary directory: /tmp/pip-unpack-a7qdj4p6
2020-12-08T21:33:36,602   Downloading novartis-pisces-0.1.2.tar.gz (18.4 MB)
2020-12-08T21:33:39,338   Added novartis-pisces==0.1.2 from https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 to build tracker '/tmp/pip-req-tracker-5g3yh5hd'
2020-12-08T21:33:39,339     Running setup.py (path:/tmp/pip-wheel-_8fpond5/novartis-pisces/setup.py) egg_info for package novartis-pisces
2020-12-08T21:33:39,340     Created temporary directory: /tmp/pip-pip-egg-info-x07e2tmv
2020-12-08T21:33:39,340     Running command python setup.py egg_info
2020-12-08T21:33:43,133     running egg_info
2020-12-08T21:33:43,135     creating /tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info
2020-12-08T21:33:43,136     writing /tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/PKG-INFO
2020-12-08T21:33:43,138     writing dependency_links to /tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/dependency_links.txt
2020-12-08T21:33:43,139     writing entry points to /tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/entry_points.txt
2020-12-08T21:33:43,141     writing requirements to /tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/requires.txt
2020-12-08T21:33:43,142     writing top-level names to /tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/top_level.txt
2020-12-08T21:33:43,143     writing manifest file '/tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/SOURCES.txt'
2020-12-08T21:33:43,310     reading manifest file '/tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/SOURCES.txt'
2020-12-08T21:33:43,313     reading manifest template 'MANIFEST.in'
2020-12-08T21:33:43,326     writing manifest file '/tmp/pip-pip-egg-info-x07e2tmv/novartis_pisces.egg-info/SOURCES.txt'
2020-12-08T21:33:43,405   Source in /tmp/pip-wheel-_8fpond5/novartis-pisces has version 0.1.2, which satisfies requirement novartis-pisces==0.1.2 from https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00
2020-12-08T21:33:43,406   Removed novartis-pisces==0.1.2 from https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 from build tracker '/tmp/pip-req-tracker-5g3yh5hd'
2020-12-08T21:33:43,408 Building wheels for collected packages: novartis-pisces
2020-12-08T21:33:43,413   Created temporary directory: /tmp/pip-wheel-7qq42def
2020-12-08T21:33:43,414   Building wheel for novartis-pisces (setup.py): started
2020-12-08T21:33:43,414   Destination directory: /tmp/pip-wheel-7qq42def
2020-12-08T21:33:43,414   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_8fpond5/novartis-pisces/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_8fpond5/novartis-pisces/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7qq42def
2020-12-08T21:33:44,744   running bdist_wheel
2020-12-08T21:33:44,747   running build
2020-12-08T21:33:44,747   running build_py
2020-12-08T21:33:44,869   creating build
2020-12-08T21:33:44,870   creating build/lib
2020-12-08T21:33:44,870   creating build/lib/pisces
2020-12-08T21:33:44,872   copying pisces/submit.py -> build/lib/pisces
2020-12-08T21:33:44,874   copying pisces/index.py -> build/lib/pisces
2020-12-08T21:33:44,877   copying pisces/__init__.py -> build/lib/pisces
2020-12-08T21:33:44,879   copying pisces/qc.py -> build/lib/pisces
2020-12-08T21:33:44,882   copying pisces/run.py -> build/lib/pisces
2020-12-08T21:33:44,884   copying pisces/cli.py -> build/lib/pisces
2020-12-08T21:33:44,887   copying pisces/fastq.py -> build/lib/pisces
2020-12-08T21:33:44,889   running egg_info
2020-12-08T21:33:44,892   writing novartis_pisces.egg-info/PKG-INFO
2020-12-08T21:33:44,894   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2020-12-08T21:33:44,896   writing entry points to novartis_pisces.egg-info/entry_points.txt
2020-12-08T21:33:44,898   writing requirements to novartis_pisces.egg-info/requires.txt
2020-12-08T21:33:44,899   writing top-level names to novartis_pisces.egg-info/top_level.txt
2020-12-08T21:33:44,935   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2020-12-08T21:33:44,952   reading manifest template 'MANIFEST.in'
2020-12-08T21:33:44,966   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2020-12-08T21:33:44,972   copying pisces/.DS_Store -> build/lib/pisces
2020-12-08T21:33:44,975   copying pisces/config.json -> build/lib/pisces
2020-12-08T21:33:44,978   creating build/lib/pisces/R
2020-12-08T21:33:44,979   copying pisces/R/.DS_Store -> build/lib/pisces/R
2020-12-08T21:33:44,982   copying pisces/R/.Rprofile -> build/lib/pisces/R
2020-12-08T21:33:44,984   copying pisces/R/.gitignore -> build/lib/pisces/R
2020-12-08T21:33:44,987   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2020-12-08T21:33:44,990   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2020-12-08T21:33:44,993   creating build/lib/pisces/R/renv
2020-12-08T21:33:44,994   copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv
2020-12-08T21:33:44,997   creating build/lib/pisces/data
2020-12-08T21:33:44,998   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2020-12-08T21:33:45,002   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2020-12-08T21:33:45,006   creating build/lib/pisces/scripts
2020-12-08T21:33:45,007   copying pisces/scripts/.DS_Store -> build/lib/pisces/scripts
2020-12-08T21:33:45,010   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2020-12-08T21:33:45,014   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2020-12-08T21:33:45,018   creating build/lib/pisces/tests
2020-12-08T21:33:45,019   copying pisces/tests/test_cli.py -> build/lib/pisces/tests
2020-12-08T21:33:45,023   installing to build/bdist.linux-armv7l/wheel
2020-12-08T21:33:45,024   running install
2020-12-08T21:33:45,025   running install_lib
2020-12-08T21:33:45,030   creating build/bdist.linux-armv7l
2020-12-08T21:33:45,031   creating build/bdist.linux-armv7l/wheel
2020-12-08T21:33:45,033   creating build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,034   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,038   creating build/bdist.linux-armv7l/wheel/pisces/tests
2020-12-08T21:33:45,039   copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests
2020-12-08T21:33:45,042   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,046   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,049   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,052   copying build/lib/pisces/.DS_Store -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,055   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-08T21:33:45,056   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-08T21:33:45,060   copying build/lib/pisces/scripts/.DS_Store -> build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-08T21:33:45,062   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2020-12-08T21:33:45,065   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,069   creating build/bdist.linux-armv7l/wheel/pisces/R
2020-12-08T21:33:45,070   copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R
2020-12-08T21:33:45,072   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2020-12-08T21:33:45,077   creating build/bdist.linux-armv7l/wheel/pisces/R/renv
2020-12-08T21:33:45,078   copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv
2020-12-08T21:33:45,081   copying build/lib/pisces/R/.DS_Store -> build/bdist.linux-armv7l/wheel/pisces/R
2020-12-08T21:33:45,084   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2020-12-08T21:33:45,086   copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R
2020-12-08T21:33:45,088   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,091   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,094   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2020-12-08T21:33:45,097   creating build/bdist.linux-armv7l/wheel/pisces/data
2020-12-08T21:33:45,098   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2020-12-08T21:33:45,102   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2020-12-08T21:33:45,105   running install_egg_info
2020-12-08T21:33:45,108   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.2-py3.7.egg-info
2020-12-08T21:33:45,124   running install_scripts
2020-12-08T21:33:45,616   Installing salmon
2020-12-08T21:33:51,115   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2020-12-08T21:33:51,122   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.2.dist-info/WHEEL
2020-12-08T21:33:51,125   creating '/tmp/pip-wheel-7qq42def/novartis_pisces-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-12-08T21:33:51,131   adding 'pisces/.DS_Store'
2020-12-08T21:33:51,133   adding 'pisces/__init__.py'
2020-12-08T21:33:51,135   adding 'pisces/cli.py'
2020-12-08T21:33:51,137   adding 'pisces/config.json'
2020-12-08T21:33:51,139   adding 'pisces/fastq.py'
2020-12-08T21:33:51,142   adding 'pisces/index.py'
2020-12-08T21:33:51,144   adding 'pisces/qc.py'
2020-12-08T21:33:51,145   adding 'pisces/run.py'
2020-12-08T21:33:51,148   adding 'pisces/submit.py'
2020-12-08T21:33:51,150   adding 'pisces/R/.DS_Store'
2020-12-08T21:33:51,152   adding 'pisces/R/.Rprofile'
2020-12-08T21:33:51,153   adding 'pisces/R/.gitignore'
2020-12-08T21:33:51,156   adding 'pisces/R/make_expression_matrix.R'
2020-12-08T21:33:51,158   adding 'pisces/R/set_up_dependencies.R'
2020-12-08T21:33:51,161   adding 'pisces/R/renv/activate.R'
2020-12-08T21:33:51,173   adding 'pisces/data/fp_kmers.txt'
2020-12-08T21:33:51,182   adding 'pisces/data/fp_kmers_col1.txt'
2020-12-08T21:33:51,184   adding 'pisces/scripts/.DS_Store'
2020-12-08T21:33:51,188   adding 'pisces/scripts/create_sample_sets_stripped.py'
2020-12-08T21:33:51,190   adding 'pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py'
2020-12-08T21:33:51,192   adding 'pisces/tests/test_cli.py'
2020-12-08T21:33:51,193   adding 'novartis_pisces-0.1.2.dist-info/LICENSE'
2020-12-08T21:33:51,195   adding 'novartis_pisces-0.1.2.dist-info/METADATA'
2020-12-08T21:33:51,196   adding 'novartis_pisces-0.1.2.dist-info/WHEEL'
2020-12-08T21:33:51,196   adding 'novartis_pisces-0.1.2.dist-info/entry_points.txt'
2020-12-08T21:33:51,197   adding 'novartis_pisces-0.1.2.dist-info/top_level.txt'
2020-12-08T21:33:51,198   adding 'novartis_pisces-0.1.2.dist-info/RECORD'
2020-12-08T21:33:51,200   removing build/bdist.linux-armv7l/wheel
2020-12-08T21:33:51,298   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2020-12-08T21:33:51,301   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.2-py3-none-any.whl size=61852 sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b
2020-12-08T21:33:51,302   Stored in directory: /tmp/pip-ephem-wheel-cache-xe4avzkv/wheels/48/80/98/25a7e2c14986084b4373b42594af3784546277c68f0f9e2f0d
2020-12-08T21:33:51,304 Successfully built novartis-pisces
2020-12-08T21:33:51,310 Removed build tracker: '/tmp/pip-req-tracker-5g3yh5hd'