2020-12-09T16:47:49,445 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-12-09T16:47:50,132 Created temporary directory: /tmp/pip-ephem-wheel-cache-qcleb2jt 2020-12-09T16:47:50,137 Created temporary directory: /tmp/pip-req-tracker-pqfxiqg1 2020-12-09T16:47:50,138 Initialized build tracking at /tmp/pip-req-tracker-pqfxiqg1 2020-12-09T16:47:50,138 Created build tracker: /tmp/pip-req-tracker-pqfxiqg1 2020-12-09T16:47:50,138 Entered build tracker: /tmp/pip-req-tracker-pqfxiqg1 2020-12-09T16:47:50,140 Created temporary directory: /tmp/pip-wheel-3dr473z8 2020-12-09T16:47:50,160 1 location(s) to search for versions of sequana: 2020-12-09T16:47:50,160 * https://pypi.org/simple/sequana/ 2020-12-09T16:47:50,160 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2020-12-09T16:47:50,163 Getting page https://pypi.org/simple/sequana/ 2020-12-09T16:47:50,167 Found 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https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz#sha256=11c51f29d0d696451896fc56e940e059d191b6f17616776e08eb5b1c5ac5dda5 (from https://pypi.org/simple/sequana/), version: 0.8.2 2020-12-09T16:47:50,882 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz#sha256=4c47176589613a57227e742b9f31144f6714dad53078708baa4a3d1ea3a16994 (from https://pypi.org/simple/sequana/), version: 0.8.3 2020-12-09T16:47:50,883 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz#sha256=a11baec596d779f399512d3fe853ecdd582a16691880c495509d34d8cc66e2e7 (from https://pypi.org/simple/sequana/), version: 0.8.4 2020-12-09T16:47:50,884 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz#sha256=a1c0b4f766b774380d74c90cc4af7b6c222a2d1630c0be4a906fff8d796ffe08 (from https://pypi.org/simple/sequana/), version: 0.8.5 2020-12-09T16:47:50,884 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz#sha256=fa651ddd8a29046d6e5aec081ad30b8b0469b8e81fb2a59cf4d8bb20c4fe5a2f (from https://pypi.org/simple/sequana/), version: 0.8.6 2020-12-09T16:47:50,885 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 (from https://pypi.org/simple/sequana/), version: 0.9.0 2020-12-09T16:47:50,886 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2020-12-09T16:47:50,887 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2020-12-09T16:47:50,888 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2020-12-09T16:47:50,889 Found link https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 (from https://pypi.org/simple/sequana/), version: 0.9.4 2020-12-09T16:47:50,890 Found link https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff (from https://pypi.org/simple/sequana/), version: 0.9.5 2020-12-09T16:47:50,891 Found link https://files.pythonhosted.org/packages/2f/fc/f32fabca2937e7213b16a9feab8b536a76a67278ee5643ba78d628830457/sequana-0.9.6.tar.gz#sha256=879071711f7e9c0537b7f16614caa92e46c3683db1965070068876b0d1fb389c (from https://pypi.org/simple/sequana/), version: 0.9.6 2020-12-09T16:47:50,891 Found link https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 (from https://pypi.org/simple/sequana/), version: 0.9.7 2020-12-09T16:47:50,927 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2020-12-09T16:47:50,930 Using version 0.9.7 (newest of versions: 0.9.7) 2020-12-09T16:47:50,939 Collecting sequana==0.9.7 2020-12-09T16:47:50,944 Created temporary directory: /tmp/pip-unpack-glq_jh2f 2020-12-09T16:47:51,825 Downloading sequana-0.9.7.tar.gz (21.0 MB) 2020-12-09T16:48:04,995 Added sequana==0.9.7 from https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 to build tracker '/tmp/pip-req-tracker-pqfxiqg1' 2020-12-09T16:48:04,998 Running setup.py (path:/tmp/pip-wheel-3dr473z8/sequana/setup.py) egg_info for package sequana 2020-12-09T16:48:05,000 Created temporary directory: /tmp/pip-pip-egg-info-toi6unlq 2020-12-09T16:48:05,001 Running command python setup.py egg_info 2020-12-09T16:48:07,632 running egg_info 2020-12-09T16:48:07,638 creating /tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info 2020-12-09T16:48:07,641 writing requirements to /tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/requires.txt 2020-12-09T16:48:07,644 writing /tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/PKG-INFO 2020-12-09T16:48:07,651 writing entry points to /tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/entry_points.txt 2020-12-09T16:48:07,654 writing top-level names to /tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/top_level.txt 2020-12-09T16:48:07,656 writing dependency_links to /tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/dependency_links.txt 2020-12-09T16:48:07,662 writing manifest file '/tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/SOURCES.txt' 2020-12-09T16:48:08,839 reading manifest file '/tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/SOURCES.txt' 2020-12-09T16:48:08,843 reading manifest template 'MANIFEST.in' 2020-12-09T16:48:08,851 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-12-09T16:48:08,856 warning: no previously-included files matching '*pyc' found under directory '*' 2020-12-09T16:48:09,749 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-12-09T16:48:09,752 warning: no previously-included files matching '*' found under directory 'test' 2020-12-09T16:48:09,756 warning: no previously-included files found matching 'sequana/rm2.py' 2020-12-09T16:48:09,813 writing manifest file '/tmp/pip-pip-egg-info-toi6unlq/sequana.egg-info/SOURCES.txt' 2020-12-09T16:48:09,951 Source in /tmp/pip-wheel-3dr473z8/sequana has version 0.9.7, which satisfies requirement sequana==0.9.7 from https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 2020-12-09T16:48:09,952 Removed sequana==0.9.7 from https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 from build tracker '/tmp/pip-req-tracker-pqfxiqg1' 2020-12-09T16:48:09,957 Building wheels for collected packages: sequana 2020-12-09T16:48:09,966 Created temporary directory: /tmp/pip-wheel-wiffn_gu 2020-12-09T16:48:09,967 Building wheel for sequana (setup.py): started 2020-12-09T16:48:09,967 Destination directory: /tmp/pip-wheel-wiffn_gu 2020-12-09T16:48:09,968 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3dr473z8/sequana/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3dr473z8/sequana/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-wiffn_gu 2020-12-09T16:48:12,503 running bdist_wheel 2020-12-09T16:48:12,519 running build 2020-12-09T16:48:12,520 running build_py 2020-12-09T16:48:12,867 creating build 2020-12-09T16:48:12,868 creating build/lib 2020-12-09T16:48:12,870 creating build/lib/sequana 2020-12-09T16:48:12,873 copying sequana/demultiplex.py -> build/lib/sequana 2020-12-09T16:48:12,879 copying sequana/fasta.py -> build/lib/sequana 2020-12-09T16:48:12,884 copying sequana/kegg.py -> build/lib/sequana 2020-12-09T16:48:12,894 copying sequana/canu_scanner.py -> build/lib/sequana 2020-12-09T16:48:12,901 copying sequana/contigs.py -> build/lib/sequana 2020-12-09T16:48:12,908 copying sequana/running_median.py -> build/lib/sequana 2020-12-09T16:48:12,913 copying sequana/bedtools.py -> build/lib/sequana 2020-12-09T16:48:12,924 copying sequana/vcf_filter.py -> build/lib/sequana 2020-12-09T16:48:12,932 copying sequana/enrichment.py -> build/lib/sequana 2020-12-09T16:48:12,944 copying sequana/genbank.py -> build/lib/sequana 2020-12-09T16:48:12,949 copying sequana/expdesign.py -> build/lib/sequana 2020-12-09T16:48:12,955 copying sequana/mgi.py -> build/lib/sequana 2020-12-09T16:48:12,960 copying sequana/compare.py -> build/lib/sequana 2020-12-09T16:48:12,965 copying sequana/itol.py -> build/lib/sequana 2020-12-09T16:48:12,970 copying sequana/laa.py -> build/lib/sequana 2020-12-09T16:48:12,978 copying sequana/rnadiff.py -> build/lib/sequana 2020-12-09T16:48:12,988 copying sequana/salmon.py -> build/lib/sequana 2020-12-09T16:48:12,992 copying sequana/jsontool.py -> build/lib/sequana 2020-12-09T16:48:12,996 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2020-12-09T16:48:13,002 copying sequana/gtf.py -> build/lib/sequana 2020-12-09T16:48:13,007 copying sequana/snaketools.py -> build/lib/sequana 2020-12-09T16:48:13,020 copying sequana/kraken.py -> build/lib/sequana 2020-12-09T16:48:13,031 copying sequana/tools.py -> build/lib/sequana 2020-12-09T16:48:13,038 copying sequana/lazy.py -> build/lib/sequana 2020-12-09T16:48:13,042 copying sequana/gff3.py -> build/lib/sequana 2020-12-09T16:48:13,047 copying sequana/trf.py -> build/lib/sequana 2020-12-09T16:48:13,053 copying sequana/pipelines_common.py -> build/lib/sequana 2020-12-09T16:48:13,062 copying sequana/cnv.py -> build/lib/sequana 2020-12-09T16:48:13,068 copying sequana/kmer.py -> build/lib/sequana 2020-12-09T16:48:13,073 copying sequana/lazyimports.py -> build/lib/sequana 2020-12-09T16:48:13,079 copying sequana/errors.py -> build/lib/sequana 2020-12-09T16:48:13,085 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2020-12-09T16:48:13,091 copying sequana/coverage.py -> build/lib/sequana 2020-12-09T16:48:13,098 copying sequana/kraken_builder.py -> build/lib/sequana 2020-12-09T16:48:13,107 copying sequana/annotations.py -> build/lib/sequana 2020-12-09T16:48:13,111 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2020-12-09T16:48:13,117 copying sequana/stats.py -> build/lib/sequana 2020-12-09T16:48:13,121 copying sequana/vst.py -> build/lib/sequana 2020-12-09T16:48:13,125 copying sequana/sniffer.py -> build/lib/sequana 2020-12-09T16:48:13,129 copying sequana/bed.py -> build/lib/sequana 2020-12-09T16:48:13,136 copying sequana/taxonomy.py -> build/lib/sequana 2020-12-09T16:48:13,143 copying sequana/adapters.py -> build/lib/sequana 2020-12-09T16:48:13,152 copying sequana/criteria.py -> build/lib/sequana 2020-12-09T16:48:13,158 copying sequana/protein.py -> build/lib/sequana 2020-12-09T16:48:13,163 copying sequana/isoseq.py -> build/lib/sequana 2020-12-09T16:48:13,171 copying sequana/datatools.py -> build/lib/sequana 2020-12-09T16:48:13,175 copying sequana/busco.py -> build/lib/sequana 2020-12-09T16:48:13,180 copying sequana/misc.py -> build/lib/sequana 2020-12-09T16:48:13,183 copying sequana/__init__.py -> build/lib/sequana 2020-12-09T16:48:13,187 copying sequana/bamtools.py -> build/lib/sequana 2020-12-09T16:48:13,198 copying sequana/vcftools.py -> build/lib/sequana 2020-12-09T16:48:13,204 copying sequana/pacbio.py -> build/lib/sequana 2020-12-09T16:48:13,214 copying sequana/iuapc.py -> build/lib/sequana 2020-12-09T16:48:13,219 copying sequana/krona.py -> build/lib/sequana 2020-12-09T16:48:13,225 copying sequana/phred.py -> build/lib/sequana 2020-12-09T16:48:13,231 copying sequana/cpg_islands.py -> build/lib/sequana 2020-12-09T16:48:13,236 copying sequana/fastq.py -> build/lib/sequana 2020-12-09T16:48:13,246 copying sequana/cigar.py -> build/lib/sequana 2020-12-09T16:48:13,254 copying sequana/summary.py -> build/lib/sequana 2020-12-09T16:48:13,260 copying sequana/featurecounts.py -> build/lib/sequana 2020-12-09T16:48:13,267 copying sequana/sequence.py -> build/lib/sequana 2020-12-09T16:48:13,275 copying sequana/iem.py -> build/lib/sequana 2020-12-09T16:48:13,280 copying sequana/assembly.py -> build/lib/sequana 2020-12-09T16:48:13,285 copying sequana/snpeff.py -> build/lib/sequana 2020-12-09T16:48:13,290 copying sequana/find_motif.py -> build/lib/sequana 2020-12-09T16:48:13,296 copying sequana/fastqc.py -> build/lib/sequana 2020-12-09T16:48:13,302 copying sequana/databases.py -> build/lib/sequana 2020-12-09T16:48:13,309 copying sequana/iotools.py -> build/lib/sequana 2020-12-09T16:48:13,315 copying sequana/mixture.py -> build/lib/sequana 2020-12-09T16:48:13,322 copying sequana/mh.py -> build/lib/sequana 2020-12-09T16:48:13,333 creating build/lib/sequana/gui 2020-12-09T16:48:13,335 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2020-12-09T16:48:13,340 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2020-12-09T16:48:13,344 copying sequana/gui/about.py -> build/lib/sequana/gui 2020-12-09T16:48:13,348 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2020-12-09T16:48:13,358 copying sequana/gui/tools.py -> build/lib/sequana/gui 2020-12-09T16:48:13,365 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2020-12-09T16:48:13,371 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2020-12-09T16:48:13,378 copying sequana/gui/browser.py -> build/lib/sequana/gui 2020-12-09T16:48:13,385 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2020-12-09T16:48:13,390 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2020-12-09T16:48:13,404 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2020-12-09T16:48:13,410 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2020-12-09T16:48:13,417 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2020-12-09T16:48:13,421 copying sequana/gui/messages.py -> build/lib/sequana/gui 2020-12-09T16:48:13,427 copying sequana/gui/help.py -> build/lib/sequana/gui 2020-12-09T16:48:13,432 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2020-12-09T16:48:13,441 creating build/lib/sequana/rules 2020-12-09T16:48:13,442 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2020-12-09T16:48:13,449 creating build/lib/sequana/scripts 2020-12-09T16:48:13,451 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,458 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,465 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,471 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,477 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,483 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,491 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,498 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,505 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,509 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,517 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,525 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,532 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,538 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2020-12-09T16:48:13,547 creating build/lib/sequana/resources 2020-12-09T16:48:13,549 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2020-12-09T16:48:13,558 creating build/lib/sequana/multiqc 2020-12-09T16:48:13,560 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,565 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,570 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,574 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,579 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,585 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,592 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,598 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,605 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,611 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,617 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2020-12-09T16:48:13,624 creating build/lib/sequana/plots 2020-12-09T16:48:13,626 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2020-12-09T16:48:13,632 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2020-12-09T16:48:13,637 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2020-12-09T16:48:13,642 creating build/lib/sequana/pipelines 2020-12-09T16:48:13,644 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2020-12-09T16:48:13,655 creating build/lib/sequana/viz 2020-12-09T16:48:13,658 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2020-12-09T16:48:13,663 copying sequana/viz/mds.py -> build/lib/sequana/viz 2020-12-09T16:48:13,668 copying sequana/viz/pca.py -> build/lib/sequana/viz 2020-12-09T16:48:13,673 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2020-12-09T16:48:13,677 copying sequana/viz/venn.py -> build/lib/sequana/viz 2020-12-09T16:48:13,683 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2020-12-09T16:48:13,689 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2020-12-09T16:48:13,696 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2020-12-09T16:48:13,703 copying sequana/viz/anova.py -> build/lib/sequana/viz 2020-12-09T16:48:13,709 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2020-12-09T16:48:13,716 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2020-12-09T16:48:13,722 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2020-12-09T16:48:13,726 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2020-12-09T16:48:13,733 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2020-12-09T16:48:13,738 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2020-12-09T16:48:13,746 copying sequana/viz/core.py -> build/lib/sequana/viz 2020-12-09T16:48:13,752 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2020-12-09T16:48:13,758 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2020-12-09T16:48:13,769 creating build/lib/sequana/modules_report 2020-12-09T16:48:13,772 copying sequana/modules_report/enrichment.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,780 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,786 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,790 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,795 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,799 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,805 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,814 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,822 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,826 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,831 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,836 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,840 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,847 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,855 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,861 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,866 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,871 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2020-12-09T16:48:13,877 creating build/lib/sequana/sphinxext 2020-12-09T16:48:13,879 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2020-12-09T16:48:13,884 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2020-12-09T16:48:13,890 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2020-12-09T16:48:13,898 creating build/lib/sequana/utils 2020-12-09T16:48:13,901 copying sequana/utils/config.py -> build/lib/sequana/utils 2020-12-09T16:48:13,906 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2020-12-09T16:48:13,910 copying sequana/utils/tree.py -> build/lib/sequana/utils 2020-12-09T16:48:13,915 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2020-12-09T16:48:13,922 creating build/lib/sequana/rules/Adapters 2020-12-09T16:48:13,924 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2020-12-09T16:48:13,932 creating build/lib/sequana/rules/codecs 2020-12-09T16:48:13,934 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2020-12-09T16:48:13,942 creating build/lib/sequana/rules/Assembly 2020-12-09T16:48:13,944 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2020-12-09T16:48:13,950 creating build/lib/sequana/rules/Pacbio 2020-12-09T16:48:13,952 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2020-12-09T16:48:13,957 creating build/lib/sequana/rules/SnpEff 2020-12-09T16:48:13,959 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2020-12-09T16:48:13,965 creating build/lib/sequana/rules/deeptools 2020-12-09T16:48:13,967 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2020-12-09T16:48:13,974 creating build/lib/sequana/rules/picard-tools 2020-12-09T16:48:13,977 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2020-12-09T16:48:13,984 creating build/lib/sequana/rules/sambamba 2020-12-09T16:48:13,986 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2020-12-09T16:48:13,991 creating build/lib/sequana/rules/Variant_caller 2020-12-09T16:48:13,993 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2020-12-09T16:48:13,999 creating build/lib/sequana/rules/idr 2020-12-09T16:48:14,000 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2020-12-09T16:48:14,006 creating build/lib/sequana/rules/Utils 2020-12-09T16:48:14,008 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2020-12-09T16:48:14,015 creating build/lib/sequana/resources/css 2020-12-09T16:48:14,018 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2020-12-09T16:48:14,025 creating build/lib/sequana/resources/data 2020-12-09T16:48:14,027 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2020-12-09T16:48:14,034 creating build/lib/sequana/resources/testing 2020-12-09T16:48:14,036 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2020-12-09T16:48:14,041 creating build/lib/sequana/resources/js 2020-12-09T16:48:14,043 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2020-12-09T16:48:14,048 creating build/lib/sequana/resources/snpeff 2020-12-09T16:48:14,050 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2020-12-09T16:48:14,057 creating build/lib/sequana/resources/images 2020-12-09T16:48:14,059 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2020-12-09T16:48:14,067 creating build/lib/sequana/resources/canvas 2020-12-09T16:48:14,069 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2020-12-09T16:48:14,073 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2020-12-09T16:48:14,077 creating build/lib/sequana/resources/busco 2020-12-09T16:48:14,079 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2020-12-09T16:48:14,084 creating build/lib/sequana/resources/templates 2020-12-09T16:48:14,085 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2020-12-09T16:48:14,092 creating build/lib/sequana/resources/data/adapters 2020-12-09T16:48:14,095 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:14,102 creating build/lib/sequana/resources/testing/rnadiff 2020-12-09T16:48:14,104 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2020-12-09T16:48:14,794 copying sequana/rules/README.rst -> build/lib/sequana/rules 2020-12-09T16:48:14,799 creating build/lib/sequana/rules/bwa_bam_to_fastq 2020-12-09T16:48:14,801 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2020-12-09T16:48:14,806 creating build/lib/sequana/rules/tophat_mapping 2020-12-09T16:48:14,808 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2020-12-09T16:48:14,813 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-12-09T16:48:14,815 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-12-09T16:48:14,823 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-12-09T16:48:14,825 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-12-09T16:48:14,833 creating build/lib/sequana/rules/igvtools 2020-12-09T16:48:14,836 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2020-12-09T16:48:14,843 creating build/lib/sequana/rules/bowtie2_index_dynamic 2020-12-09T16:48:14,845 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2020-12-09T16:48:14,852 creating build/lib/sequana/rules/quast 2020-12-09T16:48:14,855 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2020-12-09T16:48:14,862 creating build/lib/sequana/rules/fastq_screen_report 2020-12-09T16:48:14,865 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2020-12-09T16:48:14,872 creating build/lib/sequana/rules/SARTools 2020-12-09T16:48:14,875 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2020-12-09T16:48:14,883 creating build/lib/sequana/rules/preSARTools 2020-12-09T16:48:14,885 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2020-12-09T16:48:14,893 creating build/lib/sequana/rules/dag 2020-12-09T16:48:14,895 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2020-12-09T16:48:14,902 creating build/lib/sequana/rules/format_contigs 2020-12-09T16:48:14,905 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2020-12-09T16:48:14,912 creating build/lib/sequana/rules/fastqc_dynamic 2020-12-09T16:48:14,915 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2020-12-09T16:48:14,922 creating build/lib/sequana/rules/bwa_index 2020-12-09T16:48:14,925 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2020-12-09T16:48:14,932 creating build/lib/sequana/rules/extract_fasta_from_bed 2020-12-09T16:48:14,934 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2020-12-09T16:48:14,941 creating build/lib/sequana/rules/feature_counts_dynamic 2020-12-09T16:48:14,942 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2020-12-09T16:48:14,949 creating build/lib/sequana/rules/fastq_screen 2020-12-09T16:48:14,951 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2020-12-09T16:48:14,956 creating build/lib/sequana/rules/indel_realigner 2020-12-09T16:48:14,959 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2020-12-09T16:48:14,966 creating build/lib/sequana/rules/multiqc2 2020-12-09T16:48:14,968 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2020-12-09T16:48:14,975 creating build/lib/sequana/rules/salmon_mapping 2020-12-09T16:48:14,978 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2020-12-09T16:48:14,984 creating build/lib/sequana/rules/bwa_mem_dynamic 2020-12-09T16:48:14,986 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2020-12-09T16:48:14,992 creating build/lib/sequana/rules/copy_multiple_files 2020-12-09T16:48:14,994 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2020-12-09T16:48:15,000 creating build/lib/sequana/rules/multiqc 2020-12-09T16:48:15,003 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2020-12-09T16:48:15,010 creating build/lib/sequana/rules/falco_dynamic 2020-12-09T16:48:15,013 copying sequana/rules/falco_dynamic/falco_dynamic.rules -> build/lib/sequana/rules/falco_dynamic 2020-12-09T16:48:15,020 creating build/lib/sequana/rules/bowtie1_index_dynamic 2020-12-09T16:48:15,023 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2020-12-09T16:48:15,030 creating build/lib/sequana/rules/miRNA_count_dynamic 2020-12-09T16:48:15,032 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2020-12-09T16:48:15,039 creating build/lib/sequana/rules/spikes_counting 2020-12-09T16:48:15,042 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2020-12-09T16:48:15,049 creating build/lib/sequana/rules/fastq_sampling 2020-12-09T16:48:15,051 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2020-12-09T16:48:15,059 creating build/lib/sequana/rules/prokka 2020-12-09T16:48:15,061 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2020-12-09T16:48:15,068 creating build/lib/sequana/rules/rnaseqc 2020-12-09T16:48:15,071 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2020-12-09T16:48:15,078 creating build/lib/sequana/rules/feature_counts 2020-12-09T16:48:15,080 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2020-12-09T16:48:15,086 creating build/lib/sequana/rules/sequana_coverage 2020-12-09T16:48:15,087 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2020-12-09T16:48:15,094 creating build/lib/sequana/rules/samtools_sort 2020-12-09T16:48:15,095 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2020-12-09T16:48:15,102 creating build/lib/sequana/rules/DupRadar 2020-12-09T16:48:15,104 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2020-12-09T16:48:15,112 creating build/lib/sequana/rules/bam_quality_filter 2020-12-09T16:48:15,114 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2020-12-09T16:48:15,121 creating build/lib/sequana/rules/rulegraph 2020-12-09T16:48:15,124 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2020-12-09T16:48:15,131 creating build/lib/sequana/rules/bed_to_gff 2020-12-09T16:48:15,134 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2020-12-09T16:48:15,141 creating build/lib/sequana/rules/digital_normalisation 2020-12-09T16:48:15,143 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2020-12-09T16:48:15,151 creating build/lib/sequana/rules/star_mapping 2020-12-09T16:48:15,153 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2020-12-09T16:48:15,161 creating build/lib/sequana/rules/mapping_analysis 2020-12-09T16:48:15,163 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2020-12-09T16:48:15,171 creating build/lib/sequana/rules/conda 2020-12-09T16:48:15,173 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2020-12-09T16:48:15,180 creating build/lib/sequana/rules/salmon_index 2020-12-09T16:48:15,183 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2020-12-09T16:48:15,190 creating build/lib/sequana/rules/chipuanar 2020-12-09T16:48:15,192 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2020-12-09T16:48:15,200 creating build/lib/sequana/rules/spp 2020-12-09T16:48:15,202 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2020-12-09T16:48:15,209 creating build/lib/sequana/rules/pacbio_quality 2020-12-09T16:48:15,212 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2020-12-09T16:48:15,219 creating build/lib/sequana/rules/star_index 2020-12-09T16:48:15,222 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2020-12-09T16:48:15,229 creating build/lib/sequana/rules/samtools_depth 2020-12-09T16:48:15,232 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2020-12-09T16:48:15,239 creating build/lib/sequana/rules/bam_analysis 2020-12-09T16:48:15,241 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2020-12-09T16:48:15,249 creating build/lib/sequana/rules/summary_pipeline 2020-12-09T16:48:15,252 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2020-12-09T16:48:15,260 creating build/lib/sequana/rules/fastq_stats_dynamic 2020-12-09T16:48:15,262 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2020-12-09T16:48:15,270 creating build/lib/sequana/rules/revcomp_rule 2020-12-09T16:48:15,272 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2020-12-09T16:48:15,279 creating build/lib/sequana/rules/remove_blacklist 2020-12-09T16:48:15,282 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2020-12-09T16:48:15,289 creating build/lib/sequana/rules/Adapters/identify_adapters 2020-12-09T16:48:15,291 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2020-12-09T16:48:15,299 creating build/lib/sequana/rules/Adapters/alien_trimmer 2020-12-09T16:48:15,301 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2020-12-09T16:48:15,309 creating build/lib/sequana/rules/Adapters/cutadapt 2020-12-09T16:48:15,312 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2020-12-09T16:48:15,320 creating build/lib/sequana/rules/Adapters/adapter_removal 2020-12-09T16:48:15,323 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2020-12-09T16:48:15,330 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2020-12-09T16:48:15,333 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2020-12-09T16:48:15,340 creating build/lib/sequana/rules/codecs/gz_to_bz2 2020-12-09T16:48:15,342 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2020-12-09T16:48:15,349 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-12-09T16:48:15,352 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-12-09T16:48:15,359 creating build/lib/sequana/rules/codecs/gz_to_fastq 2020-12-09T16:48:15,362 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2020-12-09T16:48:15,369 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-12-09T16:48:15,371 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-12-09T16:48:15,378 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-12-09T16:48:15,381 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-12-09T16:48:15,388 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2020-12-09T16:48:15,391 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2020-12-09T16:48:15,398 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-12-09T16:48:15,401 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-12-09T16:48:15,408 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2020-12-09T16:48:15,411 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2020-12-09T16:48:15,418 creating build/lib/sequana/rules/codecs/bam_to_fasta 2020-12-09T16:48:15,420 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2020-12-09T16:48:15,428 creating build/lib/sequana/rules/codecs/bz2_to_gz 2020-12-09T16:48:15,430 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2020-12-09T16:48:15,437 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2020-12-09T16:48:15,440 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2020-12-09T16:48:15,447 creating build/lib/sequana/rules/codecs/fastq_to_gz 2020-12-09T16:48:15,449 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2020-12-09T16:48:15,456 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2020-12-09T16:48:15,459 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2020-12-09T16:48:15,467 creating build/lib/sequana/rules/Assembly/busco_analysis 2020-12-09T16:48:15,469 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2020-12-09T16:48:15,476 creating build/lib/sequana/rules/Assembly/canu 2020-12-09T16:48:15,479 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2020-12-09T16:48:15,486 creating build/lib/sequana/rules/Assembly/busco 2020-12-09T16:48:15,489 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2020-12-09T16:48:15,496 creating build/lib/sequana/rules/Assembly/spades 2020-12-09T16:48:15,498 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2020-12-09T16:48:15,506 creating build/lib/sequana/rules/peak_calling 2020-12-09T16:48:15,507 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-12-09T16:48:15,510 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-12-09T16:48:15,518 creating build/lib/sequana/rules/multiqc/2.0 2020-12-09T16:48:15,520 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2020-12-09T16:48:15,528 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-12-09T16:48:15,530 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-12-09T16:48:15,537 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-12-09T16:48:15,540 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-12-09T16:48:15,546 creating build/lib/sequana/rules/deeptools/bamCoverage 2020-12-09T16:48:15,548 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2020-12-09T16:48:15,554 creating build/lib/sequana/rules/deeptools/plotCorrelation 2020-12-09T16:48:15,556 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2020-12-09T16:48:15,561 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-12-09T16:48:15,563 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-12-09T16:48:15,570 creating build/lib/sequana/rules/deeptools/multiBamSummary 2020-12-09T16:48:15,572 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2020-12-09T16:48:15,580 creating build/lib/sequana/rules/deeptools/plotCoverage 2020-12-09T16:48:15,582 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2020-12-09T16:48:15,589 creating build/lib/sequana/rules/kraken 2020-12-09T16:48:15,589 creating build/lib/sequana/rules/kraken/1.0 2020-12-09T16:48:15,592 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2020-12-09T16:48:15,598 creating build/lib/sequana/rules/kraken/1.1 2020-12-09T16:48:15,600 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2020-12-09T16:48:15,605 creating build/lib/sequana/rules/picard-tools/add_read_group 2020-12-09T16:48:15,608 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2020-12-09T16:48:15,615 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-09T16:48:15,618 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-09T16:48:15,625 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-09T16:48:15,627 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-09T16:48:15,633 creating build/lib/sequana/rules/picard-tools/reorderSam 2020-12-09T16:48:15,635 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2020-12-09T16:48:15,640 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-09T16:48:15,642 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-09T16:48:15,647 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2020-12-09T16:48:15,650 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2020-12-09T16:48:15,657 creating build/lib/sequana/rules/sambamba/sambamba_filter 2020-12-09T16:48:15,660 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2020-12-09T16:48:15,667 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-09T16:48:15,669 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-09T16:48:15,675 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-09T16:48:15,677 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-09T16:48:15,682 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-09T16:48:15,684 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-09T16:48:15,691 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-12-09T16:48:15,693 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-12-09T16:48:15,700 creating build/lib/sequana/rules/Variant_caller/freebayes 2020-12-09T16:48:15,703 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2020-12-09T16:48:15,710 creating build/lib/sequana/rules/idr/preIDR_dynamic 2020-12-09T16:48:15,711 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2020-12-09T16:48:15,718 creating build/lib/sequana/rules/idr/stats_peakCalling 2020-12-09T16:48:15,720 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2020-12-09T16:48:15,725 creating build/lib/sequana/rules/idr/metrics_peaks 2020-12-09T16:48:15,727 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2020-12-09T16:48:15,732 creating build/lib/sequana/rules/idr/select_peaks 2020-12-09T16:48:15,734 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2020-12-09T16:48:15,739 creating build/lib/sequana/rules/idr/intersectionApproach 2020-12-09T16:48:15,741 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2020-12-09T16:48:15,746 creating build/lib/sequana/rules/idr/compute_idr 2020-12-09T16:48:15,748 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2020-12-09T16:48:15,755 creating build/lib/sequana/rules/idr/union_peaks 2020-12-09T16:48:15,758 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2020-12-09T16:48:15,765 creating build/lib/sequana/rules/Utils/dynamic_copy 2020-12-09T16:48:15,767 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2020-12-09T16:48:15,773 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-09T16:48:15,775 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-09T16:48:15,780 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2020-12-09T16:48:15,782 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2020-12-09T16:48:15,787 creating build/lib/sequana/rules/SnpEff/snpeff 2020-12-09T16:48:15,788 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-12-09T16:48:15,791 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-12-09T16:48:15,796 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-12-09T16:48:15,798 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-12-09T16:48:15,804 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-12-09T16:48:15,805 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-09T16:48:15,808 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-09T16:48:15,815 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-09T16:48:15,818 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-09T16:48:15,825 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2020-12-09T16:48:15,832 creating build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,834 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,840 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,845 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,851 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,860 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,867 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,873 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2020-12-09T16:48:15,878 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2020-12-09T16:48:15,884 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2020-12-09T16:48:15,901 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2020-12-09T16:48:15,907 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2020-12-09T16:48:15,915 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2020-12-09T16:48:15,924 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2020-12-09T16:48:15,931 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2020-12-09T16:48:15,939 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2020-12-09T16:48:15,952 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2020-12-09T16:48:15,961 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2020-12-09T16:48:15,972 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-09T16:48:15,989 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2020-12-09T16:48:15,995 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2020-12-09T16:48:16,082 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2020-12-09T16:48:16,110 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2020-12-09T16:48:16,117 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2020-12-09T16:48:16,126 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2020-12-09T16:48:16,132 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2020-12-09T16:48:16,140 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2020-12-09T16:48:16,147 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2020-12-09T16:48:16,154 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-09T16:48:16,596 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2020-12-09T16:48:16,648 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2020-12-09T16:48:16,658 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2020-12-09T16:48:16,665 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-09T16:48:16,682 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2020-12-09T16:48:16,692 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2020-12-09T16:48:16,699 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-09T16:48:17,148 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2020-12-09T16:48:17,183 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2020-12-09T16:48:17,196 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2020-12-09T16:48:17,239 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2020-12-09T16:48:17,249 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-09T16:48:17,267 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2020-12-09T16:48:17,277 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2020-12-09T16:48:17,284 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2020-12-09T16:48:17,292 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2020-12-09T16:48:17,345 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2020-12-09T16:48:17,363 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2020-12-09T16:48:17,370 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,377 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,386 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,393 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,399 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,404 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,409 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,416 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,423 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,430 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,436 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,443 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,449 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,458 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,465 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,473 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,493 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,501 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,509 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,517 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,521 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,526 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,532 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,539 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,583 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,591 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,597 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,602 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,607 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,616 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,624 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,638 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,644 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,656 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,671 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,683 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,724 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,732 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,740 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,747 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,753 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,760 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,768 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,777 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,790 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,796 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,812 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,819 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,826 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,831 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,863 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,871 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,879 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,889 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,898 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,914 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,923 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,932 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,940 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,961 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2020-12-09T16:48:17,967 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,007 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,013 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,021 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,030 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,036 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,043 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,049 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,057 copying sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,064 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,070 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,076 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,083 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,102 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,126 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,132 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,139 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,145 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,151 copying sequana/resources/testing/test.bam.bai -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,158 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,164 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,170 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,177 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,185 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,191 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,197 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,206 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,212 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,230 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,268 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,275 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,347 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,354 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,363 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,370 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,382 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,391 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2020-12-09T16:48:18,407 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,423 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,430 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,460 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,471 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,479 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,487 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,497 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,514 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,523 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,553 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,561 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,577 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2020-12-09T16:48:18,594 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2020-12-09T16:48:18,606 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2020-12-09T16:48:18,617 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2020-12-09T16:48:18,627 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2020-12-09T16:48:18,634 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2020-12-09T16:48:18,645 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2020-12-09T16:48:18,654 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2020-12-09T16:48:18,661 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2020-12-09T16:48:18,667 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2020-12-09T16:48:18,677 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,684 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,691 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,697 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,704 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,710 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,717 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,724 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,731 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,739 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,747 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,756 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,763 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,770 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,777 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,784 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,792 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,799 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,807 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,815 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,823 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,832 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,841 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,848 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,853 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,860 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,870 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,879 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,887 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,894 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,901 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-12-09T16:48:18,910 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-12-09T16:48:18,912 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-09T16:48:18,915 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-09T16:48:19,798 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-09T16:48:21,462 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-12-09T16:48:21,463 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-09T16:48:21,466 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-09T16:48:21,561 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-12-09T16:48:21,562 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-09T16:48:21,565 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-09T16:48:21,573 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-09T16:48:21,582 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-12-09T16:48:21,583 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-09T16:48:21,587 copying sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-09T16:48:21,735 installing to build/bdist.linux-armv7l/wheel 2020-12-09T16:48:21,736 running install 2020-12-09T16:48:21,738 running install_lib 2020-12-09T16:48:21,746 creating build/bdist.linux-armv7l 2020-12-09T16:48:21,747 creating build/bdist.linux-armv7l/wheel 2020-12-09T16:48:21,754 creating build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,756 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,762 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,770 creating build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,772 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,779 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,785 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,791 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,802 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,809 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,816 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,823 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,830 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,836 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,849 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,856 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,863 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,868 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,874 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,880 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-12-09T16:48:21,887 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,898 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,905 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,912 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,919 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,932 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,940 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:21,957 creating build/bdist.linux-armv7l/wheel/sequana/rules 2020-12-09T16:48:21,961 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-12-09T16:48:21,964 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-12-09T16:48:21,972 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-12-09T16:48:21,977 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-12-09T16:48:21,980 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-12-09T16:48:21,988 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-12-09T16:48:21,990 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-12-09T16:48:21,997 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-12-09T16:48:22,003 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-12-09T16:48:22,006 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-12-09T16:48:22,015 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-12-09T16:48:22,017 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-12-09T16:48:22,026 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-12-09T16:48:22,028 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-12-09T16:48:22,036 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-12-09T16:48:22,039 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-12-09T16:48:22,047 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-12-09T16:48:22,049 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-12-09T16:48:22,058 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-12-09T16:48:22,062 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-12-09T16:48:22,065 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-12-09T16:48:22,073 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-12-09T16:48:22,075 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-12-09T16:48:22,083 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-12-09T16:48:22,086 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-12-09T16:48:22,093 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-12-09T16:48:22,096 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-12-09T16:48:22,104 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-12-09T16:48:22,106 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-12-09T16:48:22,114 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-12-09T16:48:22,117 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-12-09T16:48:22,125 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-12-09T16:48:22,127 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-12-09T16:48:22,135 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-12-09T16:48:22,138 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-12-09T16:48:22,146 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-12-09T16:48:22,148 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-12-09T16:48:22,156 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-12-09T16:48:22,159 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-12-09T16:48:22,166 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-12-09T16:48:22,169 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-12-09T16:48:22,176 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-12-09T16:48:22,182 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-12-09T16:48:22,185 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-12-09T16:48:22,193 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-12-09T16:48:22,196 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-12-09T16:48:22,203 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-12-09T16:48:22,206 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-12-09T16:48:22,214 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-12-09T16:48:22,216 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-12-09T16:48:22,225 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-12-09T16:48:22,227 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-12-09T16:48:22,235 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2020-12-09T16:48:22,238 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2020-12-09T16:48:22,246 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-12-09T16:48:22,248 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-12-09T16:48:22,258 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-12-09T16:48:22,260 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-12-09T16:48:22,269 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-12-09T16:48:22,271 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-12-09T16:48:22,279 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-12-09T16:48:22,282 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-12-09T16:48:22,290 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-12-09T16:48:22,292 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-12-09T16:48:22,301 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-12-09T16:48:22,305 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-12-09T16:48:22,308 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-12-09T16:48:22,317 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-12-09T16:48:22,320 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-12-09T16:48:22,328 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-12-09T16:48:22,331 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-12-09T16:48:22,339 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-12-09T16:48:22,341 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-12-09T16:48:22,348 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-12-09T16:48:22,354 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-12-09T16:48:22,357 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-12-09T16:48:22,365 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-12-09T16:48:22,368 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-12-09T16:48:22,376 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-12-09T16:48:22,378 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-12-09T16:48:22,386 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-12-09T16:48:22,389 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-12-09T16:48:22,396 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2020-12-09T16:48:22,399 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2020-12-09T16:48:22,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-12-09T16:48:22,409 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-12-09T16:48:22,418 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-12-09T16:48:22,420 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-12-09T16:48:22,428 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-12-09T16:48:22,431 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-12-09T16:48:22,438 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-12-09T16:48:22,441 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-12-09T16:48:22,449 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-12-09T16:48:22,451 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-12-09T16:48:22,458 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2020-12-09T16:48:22,462 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-12-09T16:48:22,465 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-12-09T16:48:22,474 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-12-09T16:48:22,476 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-12-09T16:48:22,484 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-12-09T16:48:22,487 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-12-09T16:48:22,495 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-12-09T16:48:22,497 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-12-09T16:48:22,505 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-12-09T16:48:22,510 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-12-09T16:48:22,513 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-12-09T16:48:22,521 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-12-09T16:48:22,523 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-12-09T16:48:22,531 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2020-12-09T16:48:22,536 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-12-09T16:48:22,539 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-12-09T16:48:22,546 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-12-09T16:48:22,549 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-12-09T16:48:22,556 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-12-09T16:48:22,562 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-12-09T16:48:22,566 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-09T16:48:22,570 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-12-09T16:48:22,578 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-09T16:48:22,580 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-12-09T16:48:22,588 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2020-12-09T16:48:22,591 copying build/lib/sequana/rules/falco_dynamic/falco_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2020-12-09T16:48:22,599 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-12-09T16:48:22,601 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-12-09T16:48:22,609 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-12-09T16:48:22,611 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-12-09T16:48:22,619 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-12-09T16:48:22,623 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-12-09T16:48:22,627 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-12-09T16:48:22,634 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-12-09T16:48:22,637 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-12-09T16:48:22,643 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-12-09T16:48:22,649 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-12-09T16:48:22,652 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-12-09T16:48:22,660 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-12-09T16:48:22,662 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-12-09T16:48:22,670 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-12-09T16:48:22,673 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-12-09T16:48:22,681 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2020-12-09T16:48:22,685 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2020-12-09T16:48:22,688 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2020-12-09T16:48:22,696 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2020-12-09T16:48:22,698 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2020-12-09T16:48:22,707 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-12-09T16:48:22,711 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-12-09T16:48:22,714 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-12-09T16:48:22,722 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-09T16:48:22,724 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-12-09T16:48:22,731 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-12-09T16:48:22,737 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-09T16:48:22,740 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-12-09T16:48:22,748 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-12-09T16:48:22,750 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-12-09T16:48:22,758 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-09T16:48:22,761 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-12-09T16:48:22,769 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-12-09T16:48:22,771 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-12-09T16:48:22,779 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-12-09T16:48:22,782 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-12-09T16:48:22,790 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-12-09T16:48:22,792 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-12-09T16:48:22,800 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-12-09T16:48:22,803 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2020-12-09T16:48:22,811 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-12-09T16:48:22,813 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-12-09T16:48:22,821 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-12-09T16:48:22,824 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-12-09T16:48:22,832 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-12-09T16:48:22,835 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-12-09T16:48:22,843 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-12-09T16:48:22,847 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-12-09T16:48:22,850 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-12-09T16:48:22,858 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-12-09T16:48:22,861 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-12-09T16:48:22,867 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-12-09T16:48:22,874 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-12-09T16:48:22,877 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-12-09T16:48:22,884 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-12-09T16:48:22,887 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-12-09T16:48:22,895 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-12-09T16:48:22,897 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-12-09T16:48:22,905 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-12-09T16:48:22,908 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-12-09T16:48:22,916 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-12-09T16:48:22,920 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-09T16:48:22,923 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-12-09T16:48:22,931 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-09T16:48:22,934 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-12-09T16:48:22,942 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-09T16:48:22,944 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-12-09T16:48:22,952 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-12-09T16:48:22,955 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-12-09T16:48:22,963 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-12-09T16:48:22,965 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-12-09T16:48:22,972 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-12-09T16:48:22,977 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-12-09T16:48:22,983 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-12-09T16:48:22,986 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-12-09T16:48:22,994 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-12-09T16:48:22,996 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-12-09T16:48:23,004 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-12-09T16:48:23,007 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-12-09T16:48:23,015 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-12-09T16:48:23,017 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-12-09T16:48:23,025 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-12-09T16:48:23,028 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-12-09T16:48:23,036 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-12-09T16:48:23,040 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-12-09T16:48:23,043 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-12-09T16:48:23,052 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-12-09T16:48:23,055 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-12-09T16:48:23,063 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-12-09T16:48:23,065 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-12-09T16:48:23,074 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-12-09T16:48:23,076 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-12-09T16:48:23,084 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-12-09T16:48:23,087 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-12-09T16:48:23,094 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-12-09T16:48:23,097 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-12-09T16:48:23,104 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-12-09T16:48:23,110 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-12-09T16:48:23,113 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-12-09T16:48:23,121 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-12-09T16:48:23,124 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-12-09T16:48:23,132 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-12-09T16:48:23,135 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-12-09T16:48:23,143 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2020-12-09T16:48:23,145 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2020-12-09T16:48:23,153 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-12-09T16:48:23,156 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-12-09T16:48:23,164 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-12-09T16:48:23,166 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-12-09T16:48:23,173 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-12-09T16:48:23,180 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-12-09T16:48:23,182 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-12-09T16:48:23,190 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-12-09T16:48:23,194 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-12-09T16:48:23,197 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-12-09T16:48:23,205 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-09T16:48:23,208 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-12-09T16:48:23,215 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-12-09T16:48:23,218 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-12-09T16:48:23,224 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-12-09T16:48:23,231 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-12-09T16:48:23,233 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-12-09T16:48:23,241 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-12-09T16:48:23,243 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-12-09T16:48:23,252 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-12-09T16:48:23,255 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-12-09T16:48:23,262 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-12-09T16:48:23,265 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-12-09T16:48:23,271 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,278 copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,285 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,291 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,298 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,304 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,311 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,321 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,329 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,331 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,338 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,345 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,351 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,356 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,362 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,370 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,377 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,384 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,388 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,396 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,403 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,410 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,416 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-12-09T16:48:23,423 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,428 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,435 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,441 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,454 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,467 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:23,477 creating build/bdist.linux-armv7l/wheel/sequana/resources 2020-12-09T16:48:23,481 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-09T16:48:23,484 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-09T16:48:23,492 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-09T16:48:23,509 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-09T16:48:23,513 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-09T16:48:23,519 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-09T16:48:23,524 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-12-09T16:48:23,532 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,535 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,543 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,553 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,571 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,576 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,663 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,690 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,696 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,706 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,709 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,715 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,721 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,727 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,733 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,739 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,745 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,751 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,758 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,764 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,771 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,777 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,783 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,788 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,794 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,800 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,805 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,811 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,818 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,825 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,831 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,838 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,845 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,849 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,855 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,861 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,868 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,874 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,881 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,887 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,894 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,901 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-12-09T16:48:23,907 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,912 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,917 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,921 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:23,925 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,365 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,416 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,423 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,428 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,440 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,458 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,466 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,470 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,913 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,948 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:24,959 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,001 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,009 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,025 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,030 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,038 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,044 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,050 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,056 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,107 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,124 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,129 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-12-09T16:48:25,143 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,146 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,152 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,157 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,164 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,170 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,177 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,185 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,191 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,196 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,216 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,222 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,229 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,236 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,242 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,246 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,251 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,255 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,263 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,268 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,309 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,315 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,320 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,326 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,332 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,340 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,344 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,356 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,362 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,375 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,388 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,398 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,438 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,445 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,453 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,460 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,465 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,470 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,475 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,481 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,495 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,502 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,514 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,519 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,526 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,532 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,564 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,570 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:25,578 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-12-09T16:48:25,582 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-12-09T16:48:25,586 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-09T16:48:25,588 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-09T16:48:26,149 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-12-09T16:48:27,814 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-12-09T16:48:27,819 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-09T16:48:27,823 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-12-09T16:48:27,925 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-12-09T16:48:27,931 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-09T16:48:27,934 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-09T16:48:27,944 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-12-09T16:48:27,953 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-12-09T16:48:27,958 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-09T16:48:27,961 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-12-09T16:48:28,042 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-12-09T16:48:28,047 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,057 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,067 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,082 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,090 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,100 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,109 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,128 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,134 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,140 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,146 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,188 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,193 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,199 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,206 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,212 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,219 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,225 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,230 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,238 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,244 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,250 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,256 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,262 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,268 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,286 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,310 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,314 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,321 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,327 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,333 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,338 copying build/lib/sequana/resources/testing/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,344 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,349 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,355 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,361 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,368 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,373 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,379 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,388 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,394 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,411 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,450 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,456 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,527 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,533 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,538 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,545 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,551 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,562 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,569 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-12-09T16:48:28,586 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,589 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,604 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,610 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,639 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,649 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,656 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,662 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,670 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,685 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,692 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,722 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,728 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,732 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,747 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-12-09T16:48:28,763 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-12-09T16:48:28,765 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-12-09T16:48:28,773 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-12-09T16:48:28,780 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-09T16:48:28,782 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-09T16:48:28,788 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-09T16:48:28,793 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-09T16:48:28,803 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-12-09T16:48:28,811 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-12-09T16:48:28,813 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-12-09T16:48:28,820 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-12-09T16:48:28,826 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-12-09T16:48:28,828 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-12-09T16:48:28,835 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-12-09T16:48:28,840 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2020-12-09T16:48:28,847 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-09T16:48:28,850 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-09T16:48:28,856 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-09T16:48:28,861 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-09T16:48:28,867 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-09T16:48:28,873 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-12-09T16:48:28,879 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,885 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,893 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,900 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,910 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,917 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,923 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,930 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,936 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,943 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,951 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:28,962 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:28,964 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:28,972 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:28,978 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:28,983 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:28,990 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:28,997 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:29,004 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:29,010 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:29,017 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:29,024 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:29,031 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:29,037 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-12-09T16:48:29,045 copying build/lib/sequana/annotations.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,051 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,059 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,065 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,072 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,078 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,085 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,093 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,103 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,110 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,116 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,126 creating build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-09T16:48:29,128 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-09T16:48:29,136 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-09T16:48:29,141 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-12-09T16:48:29,146 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-12-09T16:48:29,149 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,152 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,156 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,162 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,168 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,176 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,182 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,188 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-12-09T16:48:29,193 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-12-09T16:48:29,199 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,205 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,213 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,219 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,226 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,238 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,243 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,253 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,259 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,265 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,271 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,276 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,286 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,294 creating build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,297 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,304 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,311 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,319 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,325 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,331 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,336 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,342 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,349 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,354 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,360 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,365 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,371 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,378 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,386 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,396 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,403 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,408 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-12-09T16:48:29,414 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,421 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,429 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,431 copying build/lib/sequana/modules_report/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,439 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,447 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,454 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,462 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,469 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,475 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,484 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,493 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,499 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,506 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,513 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,518 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,526 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,534 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,541 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,547 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,554 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-12-09T16:48:29,562 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-09T16:48:29,565 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-09T16:48:29,572 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-09T16:48:29,577 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-12-09T16:48:29,585 creating build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-09T16:48:29,588 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-09T16:48:29,595 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-09T16:48:29,601 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-09T16:48:29,608 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-12-09T16:48:29,620 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,630 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,637 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,645 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,653 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,660 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,668 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,676 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,683 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,692 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2020-12-09T16:48:29,698 running install_egg_info 2020-12-09T16:48:29,748 running egg_info 2020-12-09T16:48:29,749 writing sequana.egg-info/PKG-INFO 2020-12-09T16:48:29,755 writing entry points to sequana.egg-info/entry_points.txt 2020-12-09T16:48:29,759 writing top-level names to sequana.egg-info/top_level.txt 2020-12-09T16:48:29,762 writing requirements to sequana.egg-info/requires.txt 2020-12-09T16:48:29,765 writing dependency_links to sequana.egg-info/dependency_links.txt 2020-12-09T16:48:30,061 reading manifest file 'sequana.egg-info/SOURCES.txt' 2020-12-09T16:48:30,100 reading manifest template 'MANIFEST.in' 2020-12-09T16:48:30,109 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-12-09T16:48:30,117 warning: no previously-included files matching '*pyc' found under directory '*' 2020-12-09T16:48:32,931 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-12-09T16:48:32,937 warning: no previously-included files matching '*' found under directory 'test' 2020-12-09T16:48:32,943 warning: no previously-included files found matching 'sequana/rm2.py' 2020-12-09T16:48:33,036 writing manifest file 'sequana.egg-info/SOURCES.txt' 2020-12-09T16:48:33,042 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.9.7-py3.5.egg-info 2020-12-09T16:48:33,083 running install_scripts 2020-12-09T16:48:33,416 creating build/bdist.linux-armv7l/wheel/sequana-0.9.7.dist-info/WHEEL 2020-12-09T16:48:51,609 Building wheel for sequana (setup.py): finished with status 'done' 2020-12-09T16:48:51,968 Created wheel for sequana: filename=sequana-0.9.7-py3-none-any.whl size=21331654 sha256=ab56e134c46744a1c0b6286cdf17cf65f13ea1c6db1f036c8be5be34f3b754fc 2020-12-09T16:48:51,969 Stored in directory: /tmp/pip-ephem-wheel-cache-qcleb2jt/wheels/06/79/83/ef6319d6e678c3d17d091a34592a720b5e7d81443d6b0b22b6 2020-12-09T16:48:51,973 Successfully built sequana 2020-12-09T16:48:55,678 Removed build tracker: '/tmp/pip-req-tracker-pqfxiqg1'