2020-12-10T19:19:52,613 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-12-10T19:19:53,278 Created temporary directory: /tmp/pip-ephem-wheel-cache-s_mz1410
2020-12-10T19:19:53,283 Created temporary directory: /tmp/pip-req-tracker-syglu45v
2020-12-10T19:19:53,284 Initialized build tracking at /tmp/pip-req-tracker-syglu45v
2020-12-10T19:19:53,285 Created build tracker: /tmp/pip-req-tracker-syglu45v
2020-12-10T19:19:53,285 Entered build tracker: /tmp/pip-req-tracker-syglu45v
2020-12-10T19:19:53,286 Created temporary directory: /tmp/pip-wheel-vsa884dg
2020-12-10T19:19:53,306 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-12-10T19:19:53,309 2 location(s) to search for versions of rcsb-utils-chem:
2020-12-10T19:19:53,309 * https://pypi.org/simple/rcsb-utils-chem/
2020-12-10T19:19:53,309 * https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-12-10T19:19:53,310 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-utils-chem/
2020-12-10T19:19:53,312 Getting page https://pypi.org/simple/rcsb-utils-chem/
2020-12-10T19:19:53,316 Found index url https://pypi.org/simple
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2020-12-10T19:19:54,044   Found link https://files.pythonhosted.org/packages/0a/98/5bcd260d4335b0ceffe55f07718a88be892c1cb35bf581cebd1dbb3f7e57/rcsb.utils.chem-0.39-py2.py3-none-any.whl#sha256=160d09164c094b17ab74226ad917af500c05c30f4d5f9e6ea705ed17a732f367 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-12-10T19:19:54,045   Found link https://files.pythonhosted.org/packages/23/70/31a548e2597ba4673b3175b995e181b623e4c747e37c17df2ca582254f55/rcsb.utils.chem-0.39.tar.gz#sha256=3dc0a2b82a1f87025a5ade1c79734ec98a51edd9c33dfeaac7e9bd53050c8887 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-12-10T19:19:54,046   Found link https://files.pythonhosted.org/packages/16/1d/3890ea594852c3e66b9477c5f63add9d5581117f98a32c05ee3cd9e66f86/rcsb.utils.chem-0.40-py2.py3-none-any.whl#sha256=18e628af1e06a49c78f2dc312c9e3609ef21667559f6208788ae735952ebbfe5 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-12-10T19:19:54,047   Found link https://files.pythonhosted.org/packages/ae/6e/b68046b1cc8f0f7c3f462d2591ec63061e8fb6cd17ab41bab3d60661b792/rcsb.utils.chem-0.40.tar.gz#sha256=dfb8d44085326ad310fb773c776317420b592bf63a8b449381bf79293ff0479b (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-12-10T19:19:54,048   Found link https://files.pythonhosted.org/packages/32/55/ef2b128f8fb60a0b8ca1c7c8ee2ef5925b52664e8a2eb04271c26f45b4be/rcsb.utils.chem-0.41-py2.py3-none-any.whl#sha256=17437217dd8bbabf4ed399a27a647a0cd53405037966e0e4322ac90994abf505 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-12-10T19:19:54,049   Found link https://files.pythonhosted.org/packages/66/e5/53afaa02860c8eff39ff2c8931ced37f4ff2c3f53ec2e39d6dde071bdeb6/rcsb.utils.chem-0.41.tar.gz#sha256=af8a785c4b421d96cc12558add6109fbf1d4214c8b3973cbe66e9f027ca962c2 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-12-10T19:19:54,050   Found link https://files.pythonhosted.org/packages/48/b4/e4302c54cb810233dc0fd8b98be5e0fc89e5fc8b6a7f3bcdd12897efacf1/rcsb.utils.chem-0.42.tar.gz#sha256=f4d0f409dff8510e5193127c0da4882443860ee4e4084ac9a5ecc6ecdf2d9e74 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.42
2020-12-10T19:19:54,051   Found link https://files.pythonhosted.org/packages/cc/17/dc085272edf1a807b80df64aa51a233b41305b863cf8de95e7b339c45d86/rcsb.utils.chem-0.43.tar.gz#sha256=7a529bde69e6dfaa1951bd9fb185d8cae922668c1c16f9dcbb7f794df2c0a051 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.43
2020-12-10T19:19:54,052   Found link https://files.pythonhosted.org/packages/d0/0c/25539acbdf220d74a65ee9aaffb83f8a4c0749ba894816cb95efc6f993e6/rcsb.utils.chem-0.45.tar.gz#sha256=5965c277172093334642bb339cbdcfeabf97229d9e04600698b15cdca2e0490b (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.45
2020-12-10T19:19:54,053 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-12-10T19:19:54,053 Getting page https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-12-10T19:19:54,056 Found index url https://pypi.ngc.nvidia.com
2020-12-10T19:19:54,947 Could not fetch URL https://pypi.ngc.nvidia.com/rcsb-utils-chem/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/rcsb-utils-chem/ - skipping
2020-12-10T19:19:54,985 Given no hashes to check 1 links for project 'rcsb-utils-chem': discarding no candidates
2020-12-10T19:19:54,988 Using version 0.45 (newest of versions: 0.45)
2020-12-10T19:19:54,997 Collecting rcsb-utils-chem==0.45
2020-12-10T19:19:55,002   Created temporary directory: /tmp/pip-unpack-4vtkvuga
2020-12-10T19:19:55,233   Downloading rcsb.utils.chem-0.45.tar.gz (65 kB)
2020-12-10T19:19:55,576   Added rcsb-utils-chem==0.45 from https://files.pythonhosted.org/packages/d0/0c/25539acbdf220d74a65ee9aaffb83f8a4c0749ba894816cb95efc6f993e6/rcsb.utils.chem-0.45.tar.gz#sha256=5965c277172093334642bb339cbdcfeabf97229d9e04600698b15cdca2e0490b to build tracker '/tmp/pip-req-tracker-syglu45v'
2020-12-10T19:19:55,578     Running setup.py (path:/tmp/pip-wheel-vsa884dg/rcsb-utils-chem/setup.py) egg_info for package rcsb-utils-chem
2020-12-10T19:19:55,580     Created temporary directory: /tmp/pip-pip-egg-info-kry7k1ci
2020-12-10T19:19:55,581     Running command python setup.py egg_info
2020-12-10T19:19:57,782     running egg_info
2020-12-10T19:19:57,789     creating /tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info
2020-12-10T19:19:57,793     writing /tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/PKG-INFO
2020-12-10T19:19:57,798     writing top-level names to /tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/top_level.txt
2020-12-10T19:19:57,801     writing entry points to /tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/entry_points.txt
2020-12-10T19:19:57,803     writing dependency_links to /tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/dependency_links.txt
2020-12-10T19:19:57,806     writing requirements to /tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/requires.txt
2020-12-10T19:19:57,810     writing manifest file '/tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-10T19:19:58,182     reading manifest file '/tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-10T19:19:58,186     reading manifest template 'MANIFEST.in'
2020-12-10T19:19:58,194     writing manifest file '/tmp/pip-pip-egg-info-kry7k1ci/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-10T19:19:58,329   Source in /tmp/pip-wheel-vsa884dg/rcsb-utils-chem has version 0.45, which satisfies requirement rcsb-utils-chem==0.45 from https://files.pythonhosted.org/packages/d0/0c/25539acbdf220d74a65ee9aaffb83f8a4c0749ba894816cb95efc6f993e6/rcsb.utils.chem-0.45.tar.gz#sha256=5965c277172093334642bb339cbdcfeabf97229d9e04600698b15cdca2e0490b
2020-12-10T19:19:58,330   Removed rcsb-utils-chem==0.45 from https://files.pythonhosted.org/packages/d0/0c/25539acbdf220d74a65ee9aaffb83f8a4c0749ba894816cb95efc6f993e6/rcsb.utils.chem-0.45.tar.gz#sha256=5965c277172093334642bb339cbdcfeabf97229d9e04600698b15cdca2e0490b from build tracker '/tmp/pip-req-tracker-syglu45v'
2020-12-10T19:19:58,334 Building wheels for collected packages: rcsb-utils-chem
2020-12-10T19:19:58,343   Created temporary directory: /tmp/pip-wheel-gx7afn0z
2020-12-10T19:19:58,344   Building wheel for rcsb-utils-chem (setup.py): started
2020-12-10T19:19:58,345   Destination directory: /tmp/pip-wheel-gx7afn0z
2020-12-10T19:19:58,346   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vsa884dg/rcsb-utils-chem/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vsa884dg/rcsb-utils-chem/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gx7afn0z
2020-12-10T19:20:00,562   running bdist_wheel
2020-12-10T19:20:00,577   running build
2020-12-10T19:20:00,578   running build_py
2020-12-10T19:20:00,918   creating build
2020-12-10T19:20:00,920   creating build/lib
2020-12-10T19:20:00,921   creating build/lib/rcsb
2020-12-10T19:20:00,924   copying rcsb/__init__.py -> build/lib/rcsb
2020-12-10T19:20:00,930   creating build/lib/rcsb/utils
2020-12-10T19:20:00,931   copying rcsb/utils/__init__.py -> build/lib/rcsb/utils
2020-12-10T19:20:00,939   creating build/lib/rcsb/utils/chem
2020-12-10T19:20:00,941   copying rcsb/utils/chem/ObMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:00,947   copying rcsb/utils/chem/RdMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:00,952   copying rcsb/utils/chem/OeIoUtils.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:00,962   copying rcsb/utils/chem/IoUtils.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:00,969   copying rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:00,976   copying rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:00,984   copying rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:00,991   copying rcsb/utils/chem/OeMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,002   copying rcsb/utils/chem/OeDepict.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,009   copying rcsb/utils/chem/ChemCompSearchWrapper.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,020   copying rcsb/utils/chem/ChemCompIndexProvider.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,027   copying rcsb/utils/chem/OeMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,035   copying rcsb/utils/chem/CactvsMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,040   copying rcsb/utils/chem/OeSubStructSearchUtils.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,046   copying rcsb/utils/chem/cactvsAnnotateMol.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,051   copying rcsb/utils/chem/OeDepictAlign.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,059   copying rcsb/utils/chem/__init__.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,064   copying rcsb/utils/chem/MolecularFormula.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,069   copying rcsb/utils/chem/ChemCompDepictWrapper.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,078   copying rcsb/utils/chem/OeSearchUtils.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,085   copying rcsb/utils/chem/FailList.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,100   copying rcsb/utils/chem/PdbxChemCompConstants.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,106   copying rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,112   copying rcsb/utils/chem/OeCommonUtils.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,117   copying rcsb/utils/chem/PdbxChemComp.py -> build/lib/rcsb/utils/chem
2020-12-10T19:20:01,151   installing to build/bdist.linux-armv7l/wheel
2020-12-10T19:20:01,152   running install
2020-12-10T19:20:01,154   running install_lib
2020-12-10T19:20:01,163   creating build/bdist.linux-armv7l
2020-12-10T19:20:01,164   creating build/bdist.linux-armv7l/wheel
2020-12-10T19:20:01,169   creating build/bdist.linux-armv7l/wheel/rcsb
2020-12-10T19:20:01,175   creating build/bdist.linux-armv7l/wheel/rcsb/utils
2020-12-10T19:20:01,177   copying build/lib/rcsb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils
2020-12-10T19:20:01,185   creating build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,187   copying build/lib/rcsb/utils/chem/ObMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,194   copying build/lib/rcsb/utils/chem/RdMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,200   copying build/lib/rcsb/utils/chem/OeIoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,209   copying build/lib/rcsb/utils/chem/IoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,215   copying build/lib/rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,220   copying build/lib/rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,227   copying build/lib/rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,234   copying build/lib/rcsb/utils/chem/OeMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,244   copying build/lib/rcsb/utils/chem/OeDepict.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,250   copying build/lib/rcsb/utils/chem/ChemCompSearchWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,258   copying build/lib/rcsb/utils/chem/ChemCompIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,265   copying build/lib/rcsb/utils/chem/OeMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,271   copying build/lib/rcsb/utils/chem/CactvsMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,277   copying build/lib/rcsb/utils/chem/OeSubStructSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,283   copying build/lib/rcsb/utils/chem/cactvsAnnotateMol.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,289   copying build/lib/rcsb/utils/chem/OeDepictAlign.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,298   copying build/lib/rcsb/utils/chem/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,302   copying build/lib/rcsb/utils/chem/MolecularFormula.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,307   copying build/lib/rcsb/utils/chem/ChemCompDepictWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,314   copying build/lib/rcsb/utils/chem/OeSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,321   copying build/lib/rcsb/utils/chem/FailList.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,336   copying build/lib/rcsb/utils/chem/PdbxChemCompConstants.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,341   copying build/lib/rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,347   copying build/lib/rcsb/utils/chem/OeCommonUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,352   copying build/lib/rcsb/utils/chem/PdbxChemComp.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-10T19:20:01,359   copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb
2020-12-10T19:20:01,363   running install_egg_info
2020-12-10T19:20:01,413   running egg_info
2020-12-10T19:20:01,415   writing rcsb.utils.chem.egg-info/PKG-INFO
2020-12-10T19:20:01,421   writing entry points to rcsb.utils.chem.egg-info/entry_points.txt
2020-12-10T19:20:01,424   writing dependency_links to rcsb.utils.chem.egg-info/dependency_links.txt
2020-12-10T19:20:01,427   writing top-level names to rcsb.utils.chem.egg-info/top_level.txt
2020-12-10T19:20:01,430   writing requirements to rcsb.utils.chem.egg-info/requires.txt
2020-12-10T19:20:01,446   reading manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-10T19:20:01,451   reading manifest template 'MANIFEST.in'
2020-12-10T19:20:01,462   writing manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-10T19:20:01,466   Copying rcsb.utils.chem.egg-info to build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.45-py3.5.egg-info
2020-12-10T19:20:01,505   running install_scripts
2020-12-10T19:20:01,724   creating build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.45.dist-info/WHEEL
2020-12-10T19:20:02,088   Building wheel for rcsb-utils-chem (setup.py): finished with status 'done'
2020-12-10T19:20:02,096   Created wheel for rcsb-utils-chem: filename=rcsb.utils.chem-0.45-py2.py3-none-any.whl size=82721 sha256=c763bb9502195fe0a17c3d12313cc0525ad45100e5638324b8955a9e11da551d
2020-12-10T19:20:02,097   Stored in directory: /tmp/pip-ephem-wheel-cache-s_mz1410/wheels/93/25/01/59947cafbdd04aed25dab308b42d60328c1b0df2026b4287aa
2020-12-10T19:20:02,101 Successfully built rcsb-utils-chem
2020-12-10T19:20:02,121 Removed build tracker: '/tmp/pip-req-tracker-syglu45v'