2020-12-13T18:37:47,332 Created temporary directory: /tmp/pip-ephem-wheel-cache-o6y1idn8 2020-12-13T18:37:47,335 Created temporary directory: /tmp/pip-req-tracker-pzj3bzza 2020-12-13T18:37:47,335 Initialized build tracking at /tmp/pip-req-tracker-pzj3bzza 2020-12-13T18:37:47,335 Created build tracker: /tmp/pip-req-tracker-pzj3bzza 2020-12-13T18:37:47,336 Entered build tracker: /tmp/pip-req-tracker-pzj3bzza 2020-12-13T18:37:47,336 Created temporary directory: /tmp/pip-wheel-zud6kmxk 2020-12-13T18:37:47,348 1 location(s) to search for versions of jcvi: 2020-12-13T18:37:47,348 * https://pypi.org/simple/jcvi/ 2020-12-13T18:37:47,348 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2020-12-13T18:37:47,349 Getting page https://pypi.org/simple/jcvi/ 2020-12-13T18:37:47,351 Found index url https://pypi.org/simple 2020-12-13T18:37:47,733 Found link 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https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13 2020-12-13T18:37:47,743 Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14 2020-12-13T18:37:47,744 Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1 2020-12-13T18:37:47,744 Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2020-12-13T18:37:47,744 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2020-12-13T18:37:47,745 Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4 2020-12-13T18:37:47,745 Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2020-12-13T18:37:47,745 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2020-12-13T18:37:47,746 Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7 2020-12-13T18:37:47,746 Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8 2020-12-13T18:37:47,746 Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9 2020-12-13T18:37:47,746 Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10 2020-12-13T18:37:47,747 Found link https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 (from https://pypi.org/simple/jcvi/), version: 1.0.11 2020-12-13T18:37:47,747 Found link https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd (from https://pypi.org/simple/jcvi/), version: 1.0.12 2020-12-13T18:37:47,747 Found link https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 (from https://pypi.org/simple/jcvi/), version: 1.0.13 2020-12-13T18:37:47,748 Found link https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2020-12-13T18:37:47,759 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2020-12-13T18:37:47,759 Using version 1.0.14 (newest of versions: 1.0.14) 2020-12-13T18:37:47,763 Collecting jcvi==1.0.14 2020-12-13T18:37:47,765 Created temporary directory: /tmp/pip-unpack-1sttew77 2020-12-13T18:37:47,822 Downloading jcvi-1.0.14.tar.gz (849 kB) 2020-12-13T18:37:48,644 Added jcvi==1.0.14 from https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 to build tracker '/tmp/pip-req-tracker-pzj3bzza' 2020-12-13T18:37:48,646 Running setup.py (path:/tmp/pip-wheel-zud6kmxk/jcvi/setup.py) egg_info for package jcvi 2020-12-13T18:37:48,646 Created temporary directory: /tmp/pip-pip-egg-info-yn0qs7nv 2020-12-13T18:37:48,647 Running command python setup.py egg_info 2020-12-13T18:37:50,979 running egg_info 2020-12-13T18:37:50,981 creating /tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info 2020-12-13T18:37:50,982 writing /tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info/PKG-INFO 2020-12-13T18:37:50,986 writing dependency_links to /tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info/dependency_links.txt 2020-12-13T18:37:50,988 writing requirements to /tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info/requires.txt 2020-12-13T18:37:50,989 writing top-level names to /tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info/top_level.txt 2020-12-13T18:37:50,991 writing manifest file '/tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info/SOURCES.txt' 2020-12-13T18:37:51,016 reading manifest file '/tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info/SOURCES.txt' 2020-12-13T18:37:51,018 reading manifest template 'MANIFEST.in' 2020-12-13T18:37:51,031 writing manifest file '/tmp/pip-pip-egg-info-yn0qs7nv/jcvi.egg-info/SOURCES.txt' 2020-12-13T18:37:51,032 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.14' to '1.0.14' 2020-12-13T18:37:51,033 warnings.warn(tmpl.format(**locals())) 2020-12-13T18:37:51,152 Source in /tmp/pip-wheel-zud6kmxk/jcvi has version 1.0.14, which satisfies requirement jcvi==1.0.14 from https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 2020-12-13T18:37:51,153 Removed jcvi==1.0.14 from https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 from build tracker '/tmp/pip-req-tracker-pzj3bzza' 2020-12-13T18:37:51,157 Building wheels for collected packages: jcvi 2020-12-13T18:37:51,163 Created temporary directory: /tmp/pip-wheel-tvgpeuxe 2020-12-13T18:37:51,164 Building wheel for jcvi (setup.py): started 2020-12-13T18:37:51,164 Destination directory: /tmp/pip-wheel-tvgpeuxe 2020-12-13T18:37:51,164 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zud6kmxk/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zud6kmxk/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tvgpeuxe 2020-12-13T18:37:52,637 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.0.14' to '1.0.14' 2020-12-13T18:37:52,637 warnings.warn(tmpl.format(**locals())) 2020-12-13T18:37:52,685 running bdist_wheel 2020-12-13T18:37:52,691 running build 2020-12-13T18:37:52,691 running build_py 2020-12-13T18:37:52,696 creating build 2020-12-13T18:37:52,697 creating build/lib.linux-armv7l-3.7 2020-12-13T18:37:52,698 creating build/lib.linux-armv7l-3.7/jcvi 2020-12-13T18:37:52,699 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2020-12-13T18:37:52,702 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2020-12-13T18:37:52,704 creating build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,705 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,708 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,710 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,712 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,715 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,717 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,721 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,723 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,726 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,728 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-12-13T18:37:52,732 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,733 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,736 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,738 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,741 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,744 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,746 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,748 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,750 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,753 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,755 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,758 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,760 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-12-13T18:37:52,765 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,766 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,769 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,772 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,774 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,777 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,780 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,783 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,786 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,788 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,790 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,793 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,796 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,799 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,802 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,804 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,807 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,810 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,813 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,815 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,818 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,821 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,823 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,826 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-12-13T18:37:52,830 creating build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,831 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,834 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,836 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,839 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,841 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,844 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,847 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,850 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,852 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,855 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,858 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-12-13T18:37:52,862 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,863 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,865 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,868 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,870 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,873 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,876 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,878 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,881 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,883 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,886 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,888 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,891 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-12-13T18:37:52,895 creating build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,896 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,898 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,901 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,904 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,906 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,909 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,911 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,913 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,916 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,919 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,921 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,924 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,927 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,930 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,933 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,936 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,939 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-12-13T18:37:52,943 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,944 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,947 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,950 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,953 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,958 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,960 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,963 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,964 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,968 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,970 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,973 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,975 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,978 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,983 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,985 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,988 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,992 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,995 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:52,999 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,002 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,005 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,008 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,011 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,013 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,016 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,018 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,021 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,026 creating build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,027 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,029 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,032 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,035 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,037 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,039 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,041 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,043 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,046 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,050 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,053 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,056 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,058 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,060 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,062 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,065 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,067 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,070 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,073 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,076 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,079 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,082 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,085 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,087 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,090 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,093 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,097 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,100 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-12-13T18:37:53,105 creating build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,106 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,108 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,114 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,116 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,120 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,124 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,127 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,129 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,133 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,134 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,137 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,139 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,142 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,145 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,148 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,151 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,153 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,155 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,158 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,164 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,167 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,169 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,173 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,175 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,178 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,182 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,184 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,187 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,190 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,192 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,196 creating build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,196 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,200 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,203 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,205 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,208 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,211 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,213 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,215 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,218 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,221 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,223 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,226 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,229 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,233 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,235 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,238 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,241 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-12-13T18:37:53,244 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,245 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,247 running egg_info 2020-12-13T18:37:53,256 writing jcvi.egg-info/PKG-INFO 2020-12-13T18:37:53,259 writing dependency_links to jcvi.egg-info/dependency_links.txt 2020-12-13T18:37:53,261 writing requirements to jcvi.egg-info/requires.txt 2020-12-13T18:37:53,262 writing top-level names to jcvi.egg-info/top_level.txt 2020-12-13T18:37:53,284 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2020-12-13T18:37:53,292 reading manifest template 'MANIFEST.in' 2020-12-13T18:37:53,308 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2020-12-13T18:37:53,314 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:53,317 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:37:53,320 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,323 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,328 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,331 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,334 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,338 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,340 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,343 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,346 copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,351 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,354 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,358 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,361 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-12-13T18:37:53,381 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2020-12-13T18:37:53,382 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.14' 2020-12-13T18:37:53,383 running build_ext 2020-12-13T18:37:53,474 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2020-12-13T18:37:54,104 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zud6kmxk/jcvi/jcvi/assembly/chic.pyx 2020-12-13T18:37:54,104 tree = Parsing.p_module(s, pxd, full_module_name) 2020-12-13T18:37:55,815 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2020-12-13T18:37:56,445 building 'jcvi.assembly.chic' extension 2020-12-13T18:37:56,445 creating build/temp.linux-armv7l-3.7 2020-12-13T18:37:56,446 creating build/temp.linux-armv7l-3.7/jcvi 2020-12-13T18:37:56,446 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2020-12-13T18:37:56,447 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2020-12-13T18:37:56,882 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-12-13T18:37:56,883 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-12-13T18:37:56,883 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-12-13T18:37:56,883 from jcvi/assembly/chic.c:610: 2020-12-13T18:37:56,883 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-12-13T18:37:56,884 #warning "Using deprecated NumPy API, disable it with " \ 2020-12-13T18:37:56,884 ^~~~~~~ 2020-12-13T18:38:00,554 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2020-12-13T18:38:00,699 building 'jcvi.formats.cblast' extension 2020-12-13T18:38:00,700 creating build/temp.linux-armv7l-3.7/jcvi/formats 2020-12-13T18:38:00,700 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2020-12-13T18:38:07,785 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2020-12-13T18:38:07,947 installing to build/bdist.linux-armv7l/wheel 2020-12-13T18:38:07,947 running install 2020-12-13T18:38:07,948 running install_lib 2020-12-13T18:38:07,953 creating build/bdist.linux-armv7l 2020-12-13T18:38:07,953 creating build/bdist.linux-armv7l/wheel 2020-12-13T18:38:07,955 creating build/bdist.linux-armv7l/wheel/jcvi 2020-12-13T18:38:07,957 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,958 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,961 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,963 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,965 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,970 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,972 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,977 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,980 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,982 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,985 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-12-13T18:38:07,987 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:07,988 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:07,991 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:07,994 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:07,996 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:07,999 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,001 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,003 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,005 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,008 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,010 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,013 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,015 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-12-13T18:38:08,020 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,021 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,024 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,027 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,029 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,032 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,035 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,038 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,041 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,043 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,045 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,048 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,050 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,053 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,056 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,058 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,061 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,064 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,067 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,069 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,073 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,075 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,077 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,080 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-12-13T18:38:08,082 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-12-13T18:38:08,085 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,086 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,089 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,091 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,093 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,096 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,098 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,104 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,106 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,109 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,111 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,115 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-12-13T18:38:08,119 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,120 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,122 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,124 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,126 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,129 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,132 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,135 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,139 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,142 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,144 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,147 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,150 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-12-13T18:38:08,153 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,154 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,156 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,158 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,162 copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,165 copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,167 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,169 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,171 copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,174 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,176 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,179 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,182 copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,185 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,188 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,193 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,193 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,196 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,199 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,203 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,204 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,209 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,216 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,218 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,221 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,225 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,233 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,235 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,237 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,240 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-12-13T18:38:08,243 copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,245 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,248 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-12-13T18:38:08,252 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,253 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,256 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,260 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,263 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,271 copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,273 copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,276 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,278 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,283 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,286 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,288 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,291 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,293 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,299 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,302 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,316 copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,319 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,321 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,325 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,328 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,332 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,335 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,339 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,342 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,345 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,347 copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,350 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,353 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,356 copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-12-13T18:38:08,358 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-12-13T18:38:08,361 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,362 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,365 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,368 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,370 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,373 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,375 copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,378 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,380 copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,383 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,389 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,392 copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,395 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,398 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,400 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,402 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,404 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,407 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,410 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,413 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,416 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,419 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,423 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,426 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,428 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,431 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,435 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,439 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,443 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-12-13T18:38:08,447 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,448 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,474 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,476 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,480 copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,483 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,486 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,490 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,493 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,495 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,498 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,500 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,503 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,505 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,508 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,511 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,514 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,517 copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,520 copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,523 copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,525 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,528 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,537 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,541 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,543 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,547 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,549 copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,552 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,558 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,561 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,564 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,567 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,569 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-12-13T18:38:08,572 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,573 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,577 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,580 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,584 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,587 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,590 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,592 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,594 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,597 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,601 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,603 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,607 copying build/lib.linux-armv7l-3.7/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,610 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,616 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,618 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,621 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,624 copying build/lib.linux-armv7l-3.7/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-12-13T18:38:08,627 running install_egg_info 2020-12-13T18:38:08,636 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.14-py3.7.egg-info 2020-12-13T18:38:08,655 running install_scripts 2020-12-13T18:38:08,722 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-12-13T18:38:08,729 creating build/bdist.linux-armv7l/wheel/jcvi-1.0.14.dist-info/WHEEL 2020-12-13T18:38:08,733 creating '/tmp/pip-wheel-tvgpeuxe/jcvi-1.0.14-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-12-13T18:38:08,736 adding 'jcvi/__init__.py' 2020-12-13T18:38:08,737 adding 'jcvi/_version.py' 2020-12-13T18:38:08,739 adding 'jcvi/algorithms/__init__.py' 2020-12-13T18:38:08,741 adding 'jcvi/algorithms/__main__.py' 2020-12-13T18:38:08,743 adding 'jcvi/algorithms/ec.py' 2020-12-13T18:38:08,745 adding 'jcvi/algorithms/formula.py' 2020-12-13T18:38:08,748 adding 'jcvi/algorithms/graph.py' 2020-12-13T18:38:08,750 adding 'jcvi/algorithms/lis.py' 2020-12-13T18:38:08,753 adding 'jcvi/algorithms/lpsolve.py' 2020-12-13T18:38:08,755 adding 'jcvi/algorithms/matrix.py' 2020-12-13T18:38:08,756 adding 'jcvi/algorithms/maxsum.py' 2020-12-13T18:38:08,758 adding 'jcvi/algorithms/ml.py' 2020-12-13T18:38:08,760 adding 'jcvi/algorithms/supermap.py' 2020-12-13T18:38:08,762 adding 'jcvi/algorithms/tsp.py' 2020-12-13T18:38:08,764 adding 'jcvi/annotation/__init__.py' 2020-12-13T18:38:08,766 adding 'jcvi/annotation/__main__.py' 2020-12-13T18:38:08,769 adding 'jcvi/annotation/ahrd.py' 2020-12-13T18:38:08,771 adding 'jcvi/annotation/automaton.py' 2020-12-13T18:38:08,773 adding 'jcvi/annotation/depth.py' 2020-12-13T18:38:08,775 adding 'jcvi/annotation/evm.py' 2020-12-13T18:38:08,777 adding 'jcvi/annotation/maker.py' 2020-12-13T18:38:08,780 adding 'jcvi/annotation/pasa.py' 2020-12-13T18:38:08,782 adding 'jcvi/annotation/qc.py' 2020-12-13T18:38:08,788 adding 'jcvi/annotation/reformat.py' 2020-12-13T18:38:08,791 adding 'jcvi/annotation/stats.py' 2020-12-13T18:38:08,793 adding 'jcvi/annotation/train.py' 2020-12-13T18:38:08,795 adding 'jcvi/apps/__init__.py' 2020-12-13T18:38:08,796 adding 'jcvi/apps/__main__.py' 2020-12-13T18:38:08,799 adding 'jcvi/apps/align.py' 2020-12-13T18:38:08,808 adding 'jcvi/apps/base.py' 2020-12-13T18:38:08,811 adding 'jcvi/apps/biomart.py' 2020-12-13T18:38:08,812 adding 'jcvi/apps/blastplus.py' 2020-12-13T18:38:08,814 adding 'jcvi/apps/bowtie.py' 2020-12-13T18:38:08,816 adding 'jcvi/apps/bwa.py' 2020-12-13T18:38:08,818 adding 'jcvi/apps/cap3.py' 2020-12-13T18:38:08,820 adding 'jcvi/apps/cdhit.py' 2020-12-13T18:38:08,821 adding 'jcvi/apps/console.py' 2020-12-13T18:38:08,823 adding 'jcvi/apps/emboss.py' 2020-12-13T18:38:08,826 adding 'jcvi/apps/fetch.py' 2020-12-13T18:38:08,829 adding 'jcvi/apps/gbsubmit.py' 2020-12-13T18:38:08,831 adding 'jcvi/apps/gmap.py' 2020-12-13T18:38:08,833 adding 'jcvi/apps/grid.py' 2020-12-13T18:38:08,838 adding 'jcvi/apps/ks.py' 2020-12-13T18:38:08,840 adding 'jcvi/apps/lastz.py' 2020-12-13T18:38:08,841 adding 'jcvi/apps/mask.py' 2020-12-13T18:38:08,846 adding 'jcvi/apps/phylo.py' 2020-12-13T18:38:08,848 adding 'jcvi/apps/r.py' 2020-12-13T18:38:08,850 adding 'jcvi/apps/restriction.py' 2020-12-13T18:38:08,851 adding 'jcvi/apps/script.py' 2020-12-13T18:38:08,853 adding 'jcvi/apps/softlink.py' 2020-12-13T18:38:08,855 adding 'jcvi/apps/tesseract.py' 2020-12-13T18:38:08,861 adding 'jcvi/apps/uclust.py' 2020-12-13T18:38:08,863 adding 'jcvi/apps/uniprot.py' 2020-12-13T18:38:08,865 adding 'jcvi/apps/vecscreen.py' 2020-12-13T18:38:08,867 adding 'jcvi/assembly/__init__.py' 2020-12-13T18:38:08,869 adding 'jcvi/assembly/__main__.py' 2020-12-13T18:38:08,878 adding 'jcvi/assembly/allmaps.py' 2020-12-13T18:38:08,881 adding 'jcvi/assembly/allpaths.py' 2020-12-13T18:38:08,883 adding 'jcvi/assembly/amos.py' 2020-12-13T18:38:08,886 adding 'jcvi/assembly/automaton.py' 2020-12-13T18:38:08,887 adding 'jcvi/assembly/bambus.py' 2020-12-13T18:38:08,889 adding 'jcvi/assembly/base.py' 2020-12-13T18:38:08,895 adding 'jcvi/assembly/ca.py' 2020-12-13T18:38:08,944 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2020-12-13T18:38:08,947 adding 'jcvi/assembly/chic.pyx' 2020-12-13T18:38:08,948 adding 'jcvi/assembly/coverage.py' 2020-12-13T18:38:08,950 adding 'jcvi/assembly/gaps.py' 2020-12-13T18:38:08,953 adding 'jcvi/assembly/geneticmap.py' 2020-12-13T18:38:08,958 adding 'jcvi/assembly/goldenpath.py' 2020-12-13T18:38:08,966 adding 'jcvi/assembly/hic.py' 2020-12-13T18:38:08,972 adding 'jcvi/assembly/kmer.py' 2020-12-13T18:38:08,974 adding 'jcvi/assembly/meraculous.py' 2020-12-13T18:38:08,976 adding 'jcvi/assembly/opticalmap.py' 2020-12-13T18:38:08,981 adding 'jcvi/assembly/patch.py' 2020-12-13T18:38:08,983 adding 'jcvi/assembly/pbjelly.py' 2020-12-13T18:38:08,986 adding 'jcvi/assembly/postprocess.py' 2020-12-13T18:38:08,989 adding 'jcvi/assembly/preprocess.py' 2020-12-13T18:38:08,991 adding 'jcvi/assembly/sim.py' 2020-12-13T18:38:08,993 adding 'jcvi/assembly/soap.py' 2020-12-13T18:38:08,995 adding 'jcvi/assembly/sspace.py' 2020-12-13T18:38:08,998 adding 'jcvi/assembly/syntenypath.py' 2020-12-13T18:38:08,999 adding 'jcvi/assembly/trinity.py' 2020-12-13T18:38:09,002 adding 'jcvi/assembly/unitig.py' 2020-12-13T18:38:09,004 adding 'jcvi/compara/__init__.py' 2020-12-13T18:38:09,005 adding 'jcvi/compara/__main__.py' 2020-12-13T18:38:09,007 adding 'jcvi/compara/blastfilter.py' 2020-12-13T18:38:09,011 adding 'jcvi/compara/catalog.py' 2020-12-13T18:38:09,015 adding 'jcvi/compara/fractionation.py' 2020-12-13T18:38:09,017 adding 'jcvi/compara/pad.py' 2020-12-13T18:38:09,019 adding 'jcvi/compara/phylogeny.py' 2020-12-13T18:38:09,021 adding 'jcvi/compara/quota.py' 2020-12-13T18:38:09,023 adding 'jcvi/compara/reconstruct.py' 2020-12-13T18:38:09,025 adding 'jcvi/compara/synfind.py' 2020-12-13T18:38:09,034 adding 'jcvi/compara/synteny.py' 2020-12-13T18:38:09,037 adding 'jcvi/formats/__init__.py' 2020-12-13T18:38:09,038 adding 'jcvi/formats/__main__.py' 2020-12-13T18:38:09,040 adding 'jcvi/formats/ace.py' 2020-12-13T18:38:09,047 adding 'jcvi/formats/agp.py' 2020-12-13T18:38:09,053 adding 'jcvi/formats/base.py' 2020-12-13T18:38:09,063 adding 'jcvi/formats/bed.py' 2020-12-13T18:38:09,069 adding 'jcvi/formats/blast.py' 2020-12-13T18:38:09,070 adding 'jcvi/formats/btab.py' 2020-12-13T18:38:09,173 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2020-12-13T18:38:09,178 adding 'jcvi/formats/cblast.pyx' 2020-12-13T18:38:09,180 adding 'jcvi/formats/cdt.py' 2020-12-13T18:38:09,181 adding 'jcvi/formats/chain.py' 2020-12-13T18:38:09,183 adding 'jcvi/formats/contig.py' 2020-12-13T18:38:09,185 adding 'jcvi/formats/coords.py' 2020-12-13T18:38:09,187 adding 'jcvi/formats/excel.py' 2020-12-13T18:38:09,197 adding 'jcvi/formats/fasta.py' 2020-12-13T18:38:09,201 adding 'jcvi/formats/fastq.py' 2020-12-13T18:38:09,203 adding 'jcvi/formats/fpc.py' 2020-12-13T18:38:09,206 adding 'jcvi/formats/genbank.py' 2020-12-13T18:38:09,221 adding 'jcvi/formats/gff.py' 2020-12-13T18:38:09,223 adding 'jcvi/formats/html.py' 2020-12-13T18:38:09,225 adding 'jcvi/formats/maf.py' 2020-12-13T18:38:09,226 adding 'jcvi/formats/obo.py' 2020-12-13T18:38:09,228 adding 'jcvi/formats/paf.py' 2020-12-13T18:38:09,229 adding 'jcvi/formats/pdf.py' 2020-12-13T18:38:09,231 adding 'jcvi/formats/posmap.py' 2020-12-13T18:38:09,233 adding 'jcvi/formats/psl.py' 2020-12-13T18:38:09,234 adding 'jcvi/formats/pyblast.py' 2020-12-13T18:38:09,238 adding 'jcvi/formats/sam.py' 2020-12-13T18:38:09,240 adding 'jcvi/formats/sbt.py' 2020-12-13T18:38:09,242 adding 'jcvi/formats/sizes.py' 2020-12-13T18:38:09,250 adding 'jcvi/formats/vcf.py' 2020-12-13T18:38:09,253 adding 'jcvi/graphics/__init__.py' 2020-12-13T18:38:09,254 adding 'jcvi/graphics/__main__.py' 2020-12-13T18:38:09,256 adding 'jcvi/graphics/align.py' 2020-12-13T18:38:09,259 adding 'jcvi/graphics/assembly.py' 2020-12-13T18:38:09,262 adding 'jcvi/graphics/base.py' 2020-12-13T18:38:09,265 adding 'jcvi/graphics/blastplot.py' 2020-12-13T18:38:09,268 adding 'jcvi/graphics/chromosome.py' 2020-12-13T18:38:09,270 adding 'jcvi/graphics/coverage.py' 2020-12-13T18:38:09,272 adding 'jcvi/graphics/dotplot.py' 2020-12-13T18:38:09,275 adding 'jcvi/graphics/glyph.py' 2020-12-13T18:38:09,279 adding 'jcvi/graphics/grabseeds.py' 2020-12-13T18:38:09,281 adding 'jcvi/graphics/graph.py' 2020-12-13T18:38:09,282 adding 'jcvi/graphics/heatmap.py' 2020-12-13T18:38:09,284 adding 'jcvi/graphics/histogram.py' 2020-12-13T18:38:09,287 adding 'jcvi/graphics/karyotype.py' 2020-12-13T18:38:09,291 adding 'jcvi/graphics/landscape.py' 2020-12-13T18:38:09,293 adding 'jcvi/graphics/logo.py' 2020-12-13T18:38:09,295 adding 'jcvi/graphics/mummerplot.py' 2020-12-13T18:38:09,297 adding 'jcvi/graphics/synteny.py' 2020-12-13T18:38:09,299 adding 'jcvi/graphics/table.py' 2020-12-13T18:38:09,302 adding 'jcvi/graphics/tree.py' 2020-12-13T18:38:09,304 adding 'jcvi/graphics/wheel.py' 2020-12-13T18:38:09,306 adding 'jcvi/graphics/whisker.py' 2020-12-13T18:38:09,308 adding 'jcvi/projects/__init__.py' 2020-12-13T18:38:09,309 adding 'jcvi/projects/__main__.py' 2020-12-13T18:38:09,312 adding 'jcvi/projects/age.py' 2020-12-13T18:38:09,314 adding 'jcvi/projects/alfalfa.py' 2020-12-13T18:38:09,316 adding 'jcvi/projects/allmaps.py' 2020-12-13T18:38:09,318 adding 'jcvi/projects/bites.py' 2020-12-13T18:38:09,320 adding 'jcvi/projects/heterosis.py' 2020-12-13T18:38:09,322 adding 'jcvi/projects/ies.py' 2020-12-13T18:38:09,325 adding 'jcvi/projects/misc.py' 2020-12-13T18:38:09,329 adding 'jcvi/projects/napus.py' 2020-12-13T18:38:09,332 adding 'jcvi/projects/pineapple.py' 2020-12-13T18:38:09,333 adding 'jcvi/projects/pistachio.py' 2020-12-13T18:38:09,342 adding 'jcvi/projects/str.py' 2020-12-13T18:38:09,345 adding 'jcvi/projects/sugarcane.py' 2020-12-13T18:38:09,348 adding 'jcvi/projects/synfind.py' 2020-12-13T18:38:09,352 adding 'jcvi/projects/tgbs.py' 2020-12-13T18:38:09,354 adding 'jcvi/projects/vanilla.py' 2020-12-13T18:38:09,356 adding 'jcvi/utils/__init__.py' 2020-12-13T18:38:09,357 adding 'jcvi/utils/__main__.py' 2020-12-13T18:38:09,361 adding 'jcvi/utils/aws.py' 2020-12-13T18:38:09,363 adding 'jcvi/utils/brewer2mpl.py' 2020-12-13T18:38:09,365 adding 'jcvi/utils/cbook.py' 2020-12-13T18:38:09,367 adding 'jcvi/utils/counter.py' 2020-12-13T18:38:09,369 adding 'jcvi/utils/db.py' 2020-12-13T18:38:09,371 adding 'jcvi/utils/ez_setup.py' 2020-12-13T18:38:09,373 adding 'jcvi/utils/grouper.py' 2020-12-13T18:38:09,375 adding 'jcvi/utils/iter.py' 2020-12-13T18:38:09,377 adding 'jcvi/utils/natsort.py' 2020-12-13T18:38:09,379 adding 'jcvi/utils/orderedcollections.py' 2020-12-13T18:38:09,382 adding 'jcvi/utils/progressbar.py' 2020-12-13T18:38:09,385 adding 'jcvi/utils/range.py' 2020-12-13T18:38:09,386 adding 'jcvi/utils/table.py' 2020-12-13T18:38:09,388 adding 'jcvi/utils/taxonomy.py' 2020-12-13T18:38:09,391 adding 'jcvi/utils/webcolors.py' 2020-12-13T18:38:09,395 adding 'jcvi/utils/data/Airswing.ttf' 2020-12-13T18:38:09,412 adding 'jcvi/utils/data/Collegia.ttf' 2020-12-13T18:38:09,416 adding 'jcvi/utils/data/HookedUp.ttf' 2020-12-13T18:38:09,422 adding 'jcvi/utils/data/Humor-Sans.ttf' 2020-12-13T18:38:09,426 adding 'jcvi/utils/data/TREDs.meta.csv' 2020-12-13T18:38:09,427 adding 'jcvi/utils/data/__init__.py' 2020-12-13T18:38:09,428 adding 'jcvi/utils/data/adapters.fasta' 2020-12-13T18:38:09,430 adding 'jcvi/utils/data/blosum80.mat' 2020-12-13T18:38:09,432 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2020-12-13T18:38:09,437 adding 'jcvi/utils/data/colorbrewer_all_schemes.json' 2020-12-13T18:38:09,439 adding 'jcvi/utils/data/colorchecker.txt' 2020-12-13T18:38:09,446 adding 'jcvi/utils/data/hg38.band.txt' 2020-12-13T18:38:09,448 adding 'jcvi/utils/data/hg38.chrom.sizes' 2020-12-13T18:38:09,450 adding 'jcvi/utils/data/instance.json' 2020-12-13T18:38:09,452 adding 'jcvi/variation/__init__.py' 2020-12-13T18:38:09,453 adding 'jcvi/variation/__main__.py' 2020-12-13T18:38:09,458 adding 'jcvi/variation/cnv.py' 2020-12-13T18:38:09,460 adding 'jcvi/variation/deconvolute.py' 2020-12-13T18:38:09,462 adding 'jcvi/variation/delly.py' 2020-12-13T18:38:09,464 adding 'jcvi/variation/impute.py' 2020-12-13T18:38:09,466 adding 'jcvi/variation/phase.py' 2020-12-13T18:38:09,468 adding 'jcvi/variation/snp.py' 2020-12-13T18:38:09,474 adding 'jcvi/variation/str.py' 2020-12-13T18:38:09,476 adding 'jcvi/variation/tassel.py' 2020-12-13T18:38:09,479 adding 'jcvi-1.0.14.dist-info/LICENSE' 2020-12-13T18:38:09,480 adding 'jcvi-1.0.14.dist-info/METADATA' 2020-12-13T18:38:09,482 adding 'jcvi-1.0.14.dist-info/WHEEL' 2020-12-13T18:38:09,482 adding 'jcvi-1.0.14.dist-info/top_level.txt' 2020-12-13T18:38:09,485 adding 'jcvi-1.0.14.dist-info/RECORD' 2020-12-13T18:38:09,513 removing build/bdist.linux-armv7l/wheel 2020-12-13T18:38:09,856 Building wheel for jcvi (setup.py): finished with status 'done' 2020-12-13T18:38:09,872 Created wheel for jcvi: filename=jcvi-1.0.14-cp37-cp37m-linux_armv7l.whl size=1217212 sha256=2b79c1fb77a86503ccd4aa2f1210f99c593c49ae022e9ac33859224170e51a98 2020-12-13T18:38:09,873 Stored in directory: /tmp/pip-ephem-wheel-cache-o6y1idn8/wheels/81/b0/d5/dec8549d1315d278684703f0afbbab0fa3383e11bb6e3a85c6 2020-12-13T18:38:09,875 Successfully built jcvi 2020-12-13T18:38:09,928 Removed build tracker: '/tmp/pip-req-tracker-pzj3bzza'