2020-12-13T22:11:06,662 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-12-13T22:11:07,339 Created temporary directory: /tmp/pip-ephem-wheel-cache-q73xyz9b
2020-12-13T22:11:07,343 Created temporary directory: /tmp/pip-req-tracker-0mm3zfp0
2020-12-13T22:11:07,344 Initialized build tracking at /tmp/pip-req-tracker-0mm3zfp0
2020-12-13T22:11:07,345 Created build tracker: /tmp/pip-req-tracker-0mm3zfp0
2020-12-13T22:11:07,345 Entered build tracker: /tmp/pip-req-tracker-0mm3zfp0
2020-12-13T22:11:07,346 Created temporary directory: /tmp/pip-wheel-vz_dgfws
2020-12-13T22:11:07,367 1 location(s) to search for versions of cnvkit:
2020-12-13T22:11:07,367 * https://pypi.org/simple/cnvkit/
2020-12-13T22:11:07,367 Fetching project page and analyzing links: https://pypi.org/simple/cnvkit/
2020-12-13T22:11:07,370 Getting page https://pypi.org/simple/cnvkit/
2020-12-13T22:11:07,374 Found index url https://pypi.org/simple
2020-12-13T22:11:08,025   Found link https://files.pythonhosted.org/packages/32/77/621ff6d47c503ccded6fa853e0cd472afed8e7977b0b34ed39172d5bc345/CNVkit-0.2.tar.gz#sha256=cc64082759a0d45f2475c00932ff34394c3881b3878dea7c3351c4843b351439 (from https://pypi.org/simple/cnvkit/), version: 0.2
2020-12-13T22:11:08,027   Found link https://files.pythonhosted.org/packages/71/ff/dbcf0245a0bf19f6ba8d2eaa116e49b5722cb5baec0d67d1102efc464c7d/CNVkit-0.2.1.tar.gz#sha256=e39f32de109c811b49e98aa0a56d16c600b2a4a570cd4dbb85ba8c51c99a0176 (from https://pypi.org/simple/cnvkit/), version: 0.2.1
2020-12-13T22:11:08,028   Found link https://files.pythonhosted.org/packages/0a/b6/4b3691109140a2c4b1e5088ea5c5647757c69b61668ecbbac99c1afe4c79/CNVkit-0.2.2.tar.gz#sha256=1a61fef6ae9e227446e624b5ccddaf66a9444260014a44d63573008b8ac858cf (from https://pypi.org/simple/cnvkit/), version: 0.2.2
2020-12-13T22:11:08,029   Found link https://files.pythonhosted.org/packages/17/e2/6620f157dc63466bf87b9a572f3601393388f198a6d4890184dfae8d4dba/CNVkit-0.2.3.tar.gz#sha256=cd25e17b1f11b6a727e65d8fff286b6a6131cbc220d766a46e62e311511a8009 (from https://pypi.org/simple/cnvkit/), version: 0.2.3
2020-12-13T22:11:08,029   Found link https://files.pythonhosted.org/packages/5c/8b/13bb9d9c7aded4fc72ef8826e6a753bf63803abcc780d7ddf472f4e5bfe7/CNVkit-0.2.4.tar.gz#sha256=46e219c47250f872f5e8a5c811810f22dbb83782482296d9352b014dddc6ec06 (from https://pypi.org/simple/cnvkit/), version: 0.2.4
2020-12-13T22:11:08,030   Found link https://files.pythonhosted.org/packages/c0/08/9f5d1761025faebf8e22ed100862b15340a5148990d5f2ee2ef91c0995ac/CNVkit-0.2.5.tar.gz#sha256=5817ee039adb833233491d9ee9ffd671ccaebe852c3d411857b82bef61c2a00d (from https://pypi.org/simple/cnvkit/), version: 0.2.5
2020-12-13T22:11:08,031   Found link https://files.pythonhosted.org/packages/f4/5c/5189ced8d6e13dfbdb4c06f727296ead4775f1b146d283d4118b3b5952af/CNVkit-0.3.0.tar.gz#sha256=8e627ec98c5accf6fad252ff582b556084af165c4cd39defdaa52d3d16f35d93 (from https://pypi.org/simple/cnvkit/), version: 0.3.0
2020-12-13T22:11:08,032   Found link https://files.pythonhosted.org/packages/c8/c1/729f012a6eff3ec15ab6bc7fa750b21c7007c7339ff4774eebe26779a268/CNVkit-0.3.1.tar.gz#sha256=fe12ae55599bb6c304ff18ec5f74859c2064b94c63ca62ff50071175842947d7 (from https://pypi.org/simple/cnvkit/), version: 0.3.1
2020-12-13T22:11:08,033   Found link https://files.pythonhosted.org/packages/f4/b1/177b9324042bf94b29ee3bf890eb9337c33210615ac793d950bd61622e5e/CNVkit-0.3.2.tar.gz#sha256=9d1ebdfa7ea6467f33de191e15f7463258711b8921f899b1ae1b02b3ad98bcfe (from https://pypi.org/simple/cnvkit/), version: 0.3.2
2020-12-13T22:11:08,034   Found link https://files.pythonhosted.org/packages/e1/53/4ae40544a7f4144a47a657ff63d002a18a7c12eb0d1838657ee84883f0af/CNVkit-0.3.3.tar.gz#sha256=499c2fb240f5d66f7238a677ca73ff7bb5fc9128d7d448126c7bb8e614e7e6c1 (from https://pypi.org/simple/cnvkit/), version: 0.3.3
2020-12-13T22:11:08,035   Found link https://files.pythonhosted.org/packages/97/78/4ac941c956e24d81c29b41d96a1ec74f2810e5047079432f6a1ab77504af/CNVkit-0.3.4.tar.gz#sha256=c17b07ce386fbaa0a4f8512e4032dc8c1ab3dbad345787a556b369bb1dc01a09 (from https://pypi.org/simple/cnvkit/), version: 0.3.4
2020-12-13T22:11:08,036   Found link https://files.pythonhosted.org/packages/b0/21/3cce6c5788ede1207866fce30a54222bd45803f97100bc042c65ec7f7006/CNVkit-0.3.5.tar.gz#sha256=145b4741ebfdcec5bbd59517da5d5829ea073103cfba91c347e96c038d9d8726 (from https://pypi.org/simple/cnvkit/), version: 0.3.5
2020-12-13T22:11:08,037   Found link https://files.pythonhosted.org/packages/34/b5/245ffadbbe12eded33141f0d5679e0ace537b4ea994cfb3b9be4e3c96b14/CNVkit-0.4.0.tar.gz#sha256=e8b055011debbf3a0f2442159161db75fa01827578295001271d37e1aca7fdc7 (from https://pypi.org/simple/cnvkit/), version: 0.4.0
2020-12-13T22:11:08,037   Found link https://files.pythonhosted.org/packages/b1/51/9033a886b88b9bccffacadc50e5745cc5b345bcf5eac43973b29cb73b669/CNVkit-0.4.1.tar.gz#sha256=4bdb47dcc58c646911bd8c5ddae170411e99a652a3ea746128d92df96c91fb73 (from https://pypi.org/simple/cnvkit/), version: 0.4.1
2020-12-13T22:11:08,039   Found link https://files.pythonhosted.org/packages/e9/2f/88b099e9c539e0da2197229f0b3c6847bffce3595c65d55c68db73e3b357/CNVkit-0.5.0.tar.gz#sha256=dc4ab2a36c2cecae416299e53c4caf53c42f67b27e4467a74959165d16d566a1 (from https://pypi.org/simple/cnvkit/), version: 0.5.0
2020-12-13T22:11:08,040   Found link https://files.pythonhosted.org/packages/de/2d/7a0e31c57af9ca71e9e06ed0b7389ce928592ed68711b3ea4fbbcc6148b0/CNVkit-0.5.1.tar.gz#sha256=ef8c721fead1ff03ca6ce733d206e9dfd41afb1e2c3f318f65de2a62e7c2e804 (from https://pypi.org/simple/cnvkit/), version: 0.5.1
2020-12-13T22:11:08,041   Found link https://files.pythonhosted.org/packages/ba/d4/53e991f7ed5484327ac2960796dde2b0df0481655943e6258d7df300d108/CNVkit-0.5.2.tar.gz#sha256=1bc2ff2982d291e7f05398778db07daea7b42f508e76ed9345680d88d54b5f3f (from https://pypi.org/simple/cnvkit/), version: 0.5.2
2020-12-13T22:11:08,041   Found link https://files.pythonhosted.org/packages/30/c0/73a2d9150e51f612454978a457b92d959dd595e369838152ee25691883c7/CNVkit-0.6.0.tar.gz#sha256=4c9e3f55289726ad3ba0b001adc7b4aa66aea4758c98c198930a47f04d830b90 (from https://pypi.org/simple/cnvkit/), version: 0.6.0
2020-12-13T22:11:08,042   Found link https://files.pythonhosted.org/packages/57/d5/d79279b28721dedb1454904927226fca956c97a240713116d8d13f73b5e1/CNVkit-0.6.1.tar.gz#sha256=36034432536ea045ad49bee4590fbe13507a3fafce488c5904fdccbbd9e27ece (from https://pypi.org/simple/cnvkit/), version: 0.6.1
2020-12-13T22:11:08,043   Found link https://files.pythonhosted.org/packages/82/4e/86ed817c29e3eed784ccdb312f75487527c60db801bf074a62308425bf3b/CNVkit-0.7.0.tar.gz#sha256=0e25ad00f9812035d7fe19de9907fc6cb06973399a6f82d7e65c5755a916da21 (from https://pypi.org/simple/cnvkit/), version: 0.7.0
2020-12-13T22:11:08,044   Found link https://files.pythonhosted.org/packages/8e/c3/f04accf7a1eb4d07a3b043bd5e55f9fe19c71f9755becec69f805dc5d41e/CNVkit-0.7.1.tar.gz#sha256=faa7fb94ea43f0e01e05ef6cb061dd941c252de278a9e8a536f5cb73d9aba1b0 (from https://pypi.org/simple/cnvkit/), version: 0.7.1
2020-12-13T22:11:08,045   Found link https://files.pythonhosted.org/packages/bc/7b/65347ea640a9cbc48031a6b78754de6ee89963c7bffb4e55596c606649b7/CNVkit-0.7.2.tar.gz#sha256=9fb5308c683a38b21319d8308081155e69d0f918e94a7b3ab04bc4ab27da47e6 (from https://pypi.org/simple/cnvkit/), version: 0.7.2
2020-12-13T22:11:08,046   Found link https://files.pythonhosted.org/packages/f6/3a/e0992c81352eff90eff0fc169dceeba905d58ddd2894de9c1dfa4da8a58d/CNVkit-0.7.3.tar.gz#sha256=86ee75c0a1202b4061f98d340e0218b459e448b9b7f43f0ecd8b80c699ecc7ea (from https://pypi.org/simple/cnvkit/), version: 0.7.3
2020-12-13T22:11:08,047   Found link https://files.pythonhosted.org/packages/ba/60/bb99adaee7c90d6437e095f564d842ab82515bc71018ae048a2d02023e89/CNVkit-0.7.4.tar.gz#sha256=809dd2c642bc872ee98e1d25337f0d963c261102388b6c16365b15fa1c00400d (from https://pypi.org/simple/cnvkit/), version: 0.7.4
2020-12-13T22:11:08,048   Found link https://files.pythonhosted.org/packages/6c/d4/72a550e603acbb6160dcb9f9ce740e123328ddd5764f04b20c6e59dc27c7/CNVkit-0.7.5.tar.gz#sha256=20460c6469ccf5bfeadc81e8c35a4015bd4f41ec247fb54577cfdc2925ad7e1c (from https://pypi.org/simple/cnvkit/), version: 0.7.5
2020-12-13T22:11:08,048   Found link https://files.pythonhosted.org/packages/6b/f0/98971dfde24cc0ebeab120a907a9ad48a4d5e8d8779904dc51d3a6e5e5c0/CNVkit-0.7.6.tar.gz#sha256=2646f362fc041a22dc75312e45ab524cefec00d1de5509e58ee4130bb9d3b029 (from https://pypi.org/simple/cnvkit/), version: 0.7.6
2020-12-13T22:11:08,049   Found link https://files.pythonhosted.org/packages/52/6a/118af6fdc7183ddd1359937bd58211faa1e1977b1721bbca1b68aa70a0a6/CNVkit-0.7.7.tar.gz#sha256=4f3c0e830cae727a2920d87cfaab4983f55c4e34613d2d4a8b2d2c986ceb53fc (from https://pypi.org/simple/cnvkit/), version: 0.7.7
2020-12-13T22:11:08,050   Found link https://files.pythonhosted.org/packages/b1/ed/72ba9f4e1c5d615af3c23bf44ef01797b72b3d3cfbadf5b08658888ded42/CNVkit-0.7.8.tar.gz#sha256=b365d831329d7c939db267e4585511591a173e333b23f571e2f5ff52ac4e89ea (from https://pypi.org/simple/cnvkit/), version: 0.7.8
2020-12-13T22:11:08,051   Found link https://files.pythonhosted.org/packages/1c/af/83fb0dc51302827a407a898172220ebcfe6467c94f5f0585d64f4d25edaa/CNVkit-0.7.9.tar.gz#sha256=5ee063b3feb17c82de03f22608bdaff44caf1768bccde93cdb4e901a49770df0 (from https://pypi.org/simple/cnvkit/), version: 0.7.9
2020-12-13T22:11:08,052   Found link https://files.pythonhosted.org/packages/6f/96/af23dbe329fce0f0b1124d997d2f895c7cf05119e854aecc764b452ee236/CNVkit-0.7.10.tar.gz#sha256=7d2094e0edf6cc79856884a7c36137ff19e871a7423a6a79325795894f0e6555 (from https://pypi.org/simple/cnvkit/), version: 0.7.10
2020-12-13T22:11:08,053   Found link https://files.pythonhosted.org/packages/65/bd/78d0702de271f06c492a9b502980154394c91028ce9afcf31df4081e0d63/CNVkit-0.7.11.tar.gz#sha256=5de7b06d55f3485a8615463e4367e8631729bf72b6e994d21ca508fd872a5824 (from https://pypi.org/simple/cnvkit/), version: 0.7.11
2020-12-13T22:11:08,054   Found link https://files.pythonhosted.org/packages/b6/13/c084767ea617bf413a78d97b885949661f51d968def9d1b050c2880883bf/CNVkit-0.8.0.tar.gz#sha256=656c92ed90ac2cf212585e87219c494eddb710773f859cc792034a560c87a626 (from https://pypi.org/simple/cnvkit/), version: 0.8.0
2020-12-13T22:11:08,054   Found link https://files.pythonhosted.org/packages/c7/f4/4b6880cac43e5aae09542a5316cd77a359a778e3a6964b5a5a8c325397db/CNVkit-0.8.1.tar.gz#sha256=7691d21fc109412064e27f104374f8c811243b45b1d35ffd8119281305a8f648 (from https://pypi.org/simple/cnvkit/), version: 0.8.1
2020-12-13T22:11:08,055   Found link https://files.pythonhosted.org/packages/f3/58/34ac43541c0fc3d1817b3109c54e865001176c340cab8beb30a8aa220096/CNVkit-0.8.2.tar.gz#sha256=2ba862c6c4def6e182b7eb69e5b3d37c11a49d128e3f225e8626f6c5bd5f58d0 (from https://pypi.org/simple/cnvkit/), version: 0.8.2
2020-12-13T22:11:08,056   Found link https://files.pythonhosted.org/packages/49/05/23ed310f7478a8f75d5f5e7beea701c5ea38e2925444a6c08d6ade587ac8/CNVkit-0.8.3.tar.gz#sha256=4cd027f021382ec0a6a79456775d99ae441bd2ddc400d858b90071d1ea32ebcb (from https://pypi.org/simple/cnvkit/), version: 0.8.3
2020-12-13T22:11:08,057   Found link https://files.pythonhosted.org/packages/c0/91/87fe6e9784ac858261098649d428191aecc3f1f1b2acd52d6b6228a57cd0/CNVkit-0.8.4.tar.gz#sha256=471eb4ad2a15aa78fdf678eb9ee53e401e49f86793604bfea2f7efaca5e41143 (from https://pypi.org/simple/cnvkit/), version: 0.8.4
2020-12-13T22:11:08,058   Found link https://files.pythonhosted.org/packages/bb/05/336b14341a942aeb40e4692f75e05d8cc35dc6ef5c8524df6c91a56b1eba/CNVkit-0.8.5.tar.gz#sha256=f1084186f767dc92dc2eb274aa79dfd6a36dc32f68a29bc67df13fdbfa299b57 (from https://pypi.org/simple/cnvkit/), version: 0.8.5
2020-12-13T22:11:08,059   Found link https://files.pythonhosted.org/packages/24/4f/ad111db335d76134fe1bdf4834da59a97c069d906aac54344ecdf6c7f5b5/CNVkit-0.9.0.tar.gz#sha256=3f562388058ea06103e8e51284cbc4db9a3363a0254c867c225591b2f21d04e0 (from https://pypi.org/simple/cnvkit/), version: 0.9.0
2020-12-13T22:11:08,060   Found link https://files.pythonhosted.org/packages/5b/09/0c07291435665f9336dcda9b9ee6578da925b73a26b7583f3996f5feeca7/CNVkit-0.9.1.tar.gz#sha256=417b0ddfa24f02b81e4dcfe8367a50eee0017db411f5f3d7f0e3986e690b15a1 (from https://pypi.org/simple/cnvkit/), version: 0.9.1
2020-12-13T22:11:08,061   Found link https://files.pythonhosted.org/packages/b2/29/dc460b114eec6361554dc4709628fe309fe726a2eee6027e061cb096acaa/CNVkit-0.9.3.tar.gz#sha256=a10ee65b946c0708b2ee7f40f291fcd4a6af3811f0cc77791ea723b66e306f16 (from https://pypi.org/simple/cnvkit/), version: 0.9.3
2020-12-13T22:11:08,062   Found link https://files.pythonhosted.org/packages/cd/33/9c97e984e2e29ae6a7867ce1f5ffe719bfa15ba71040e5f7ba92ecaab2e9/CNVkit-0.9.4.tar.gz#sha256=617dd01aea9820c8ede8b9dffd598b7cf2d8aea769cc393ce44a8d6f3d976843 (from https://pypi.org/simple/cnvkit/), version: 0.9.4
2020-12-13T22:11:08,063   Found link https://files.pythonhosted.org/packages/74/7b/e540e5c5da56c17b67ecd7652af455e9b90f255c7660be8b3507036707ae/CNVkit-0.9.5.tar.gz#sha256=43ef1309b2190bd86bcc9125c9b9feec1c6b665743ae3bc6fd34c86eeb0247e9 (from https://pypi.org/simple/cnvkit/), version: 0.9.5
2020-12-13T22:11:08,063   Found link https://files.pythonhosted.org/packages/e1/26/a3f7541c9b75e9d1237964e657c60cb628909b3fb10bd33c2fce23d44e87/CNVkit-0.9.6.tar.gz#sha256=be889c98a5cf0a994330b8c31c0a65151fb0095fe4e75a1e04118da2516248c2 (from https://pypi.org/simple/cnvkit/), version: 0.9.6
2020-12-13T22:11:08,064   Found link https://files.pythonhosted.org/packages/2a/7b/167074cd4485557d605d7e659cd5130b8bdb225ee8de8d30bb6b19fc39d4/CNVkit-0.9.7b0.tar.gz#sha256=4b0af020775c2ae0d50f56c707c704bb746a23ff518cd7c8179211af6fb6ad78 (from https://pypi.org/simple/cnvkit/), version: 0.9.7b0
2020-12-13T22:11:08,065   Found link https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz#sha256=4ff341929c3f384531b8aadc6164f8bbd45c598b902e15710e52b9266da22640 (from https://pypi.org/simple/cnvkit/), version: 0.9.7b1
2020-12-13T22:11:08,066   Found link https://files.pythonhosted.org/packages/67/f2/8989d8ed3163f78b3c8d524f97c9ce3b2d670f76ed17a8473347584d5d65/CNVkit-0.9.7.tar.gz#sha256=d68adc0121e17c61a3aa28c0a9ba6526510a5a0df0f0a6eb1818bab71b7e927a (from https://pypi.org/simple/cnvkit/), version: 0.9.7
2020-12-13T22:11:08,067   Found link https://files.pythonhosted.org/packages/3e/86/13f74ee3d3daccc6dc29420a5ed55dec1263991998ebd43e20c3e3b2a397/CNVkit-0.9.8.tar.gz#sha256=467e638de3302d1db1ae87c4498b40cceb26fab2cb5d7711f2a7d3e32de8bf20 (from https://pypi.org/simple/cnvkit/), version: 0.9.8
2020-12-13T22:11:08,097 Given no hashes to check 1 links for project 'cnvkit': discarding no candidates
2020-12-13T22:11:08,099 Using version 0.9.8 (newest of versions: 0.9.8)
2020-12-13T22:11:08,108 Collecting cnvkit==0.9.8
2020-12-13T22:11:08,113   Created temporary directory: /tmp/pip-unpack-d5o2897a
2020-12-13T22:11:08,362   Downloading CNVkit-0.9.8.tar.gz (168 kB)
2020-12-13T22:11:08,990   Added cnvkit==0.9.8 from https://files.pythonhosted.org/packages/3e/86/13f74ee3d3daccc6dc29420a5ed55dec1263991998ebd43e20c3e3b2a397/CNVkit-0.9.8.tar.gz#sha256=467e638de3302d1db1ae87c4498b40cceb26fab2cb5d7711f2a7d3e32de8bf20 to build tracker '/tmp/pip-req-tracker-0mm3zfp0'
2020-12-13T22:11:08,993     Running setup.py (path:/tmp/pip-wheel-vz_dgfws/cnvkit/setup.py) egg_info for package cnvkit
2020-12-13T22:11:08,995     Created temporary directory: /tmp/pip-pip-egg-info-u_hh72o9
2020-12-13T22:11:08,997     Running command python setup.py egg_info
2020-12-13T22:11:11,262     running egg_info
2020-12-13T22:11:11,268     creating /tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info
2020-12-13T22:11:11,271     writing top-level names to /tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info/top_level.txt
2020-12-13T22:11:11,274     writing dependency_links to /tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info/dependency_links.txt
2020-12-13T22:11:11,276     writing requirements to /tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info/requires.txt
2020-12-13T22:11:11,278     writing /tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info/PKG-INFO
2020-12-13T22:11:11,286     writing manifest file '/tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info/SOURCES.txt'
2020-12-13T22:11:11,678     reading manifest file '/tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info/SOURCES.txt'
2020-12-13T22:11:11,692     writing manifest file '/tmp/pip-pip-egg-info-u_hh72o9/CNVkit.egg-info/SOURCES.txt'
2020-12-13T22:11:11,827   Source in /tmp/pip-wheel-vz_dgfws/cnvkit has version 0.9.8, which satisfies requirement cnvkit==0.9.8 from https://files.pythonhosted.org/packages/3e/86/13f74ee3d3daccc6dc29420a5ed55dec1263991998ebd43e20c3e3b2a397/CNVkit-0.9.8.tar.gz#sha256=467e638de3302d1db1ae87c4498b40cceb26fab2cb5d7711f2a7d3e32de8bf20
2020-12-13T22:11:11,829   Removed cnvkit==0.9.8 from https://files.pythonhosted.org/packages/3e/86/13f74ee3d3daccc6dc29420a5ed55dec1263991998ebd43e20c3e3b2a397/CNVkit-0.9.8.tar.gz#sha256=467e638de3302d1db1ae87c4498b40cceb26fab2cb5d7711f2a7d3e32de8bf20 from build tracker '/tmp/pip-req-tracker-0mm3zfp0'
2020-12-13T22:11:11,833 Building wheels for collected packages: cnvkit
2020-12-13T22:11:11,842   Created temporary directory: /tmp/pip-wheel-1wkxzmsr
2020-12-13T22:11:11,843   Building wheel for cnvkit (setup.py): started
2020-12-13T22:11:11,844   Destination directory: /tmp/pip-wheel-1wkxzmsr
2020-12-13T22:11:11,845   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vz_dgfws/cnvkit/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vz_dgfws/cnvkit/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1wkxzmsr
2020-12-13T22:11:14,049   running bdist_wheel
2020-12-13T22:11:14,064   running build
2020-12-13T22:11:14,065   running build_py
2020-12-13T22:11:14,401   creating build
2020-12-13T22:11:14,402   creating build/lib
2020-12-13T22:11:14,404   creating build/lib/cnvlib
2020-12-13T22:11:14,406   copying cnvlib/rna.py -> build/lib/cnvlib
2020-12-13T22:11:14,413   copying cnvlib/export.py -> build/lib/cnvlib
2020-12-13T22:11:14,419   copying cnvlib/segfilters.py -> build/lib/cnvlib
2020-12-13T22:11:14,424   copying cnvlib/antitarget.py -> build/lib/cnvlib
2020-12-13T22:11:14,430   copying cnvlib/cnary.py -> build/lib/cnvlib
2020-12-13T22:11:14,438   copying cnvlib/vary.py -> build/lib/cnvlib
2020-12-13T22:11:14,445   copying cnvlib/bintest.py -> build/lib/cnvlib
2020-12-13T22:11:14,451   copying cnvlib/autobin.py -> build/lib/cnvlib
2020-12-13T22:11:14,458   copying cnvlib/coverage.py -> build/lib/cnvlib
2020-12-13T22:11:14,464   copying cnvlib/import_rna.py -> build/lib/cnvlib
2020-12-13T22:11:14,471   copying cnvlib/metrics.py -> build/lib/cnvlib
2020-12-13T22:11:14,476   copying cnvlib/_version.py -> build/lib/cnvlib
2020-12-13T22:11:14,481   copying cnvlib/cluster.py -> build/lib/cnvlib
2020-12-13T22:11:14,488   copying cnvlib/access.py -> build/lib/cnvlib
2020-12-13T22:11:14,492   copying cnvlib/reference.py -> build/lib/cnvlib
2020-12-13T22:11:14,499   copying cnvlib/descriptives.py -> build/lib/cnvlib
2020-12-13T22:11:14,504   copying cnvlib/fix.py -> build/lib/cnvlib
2020-12-13T22:11:14,510   copying cnvlib/__init__.py -> build/lib/cnvlib
2020-12-13T22:11:14,515   copying cnvlib/diagram.py -> build/lib/cnvlib
2020-12-13T22:11:14,522   copying cnvlib/call.py -> build/lib/cnvlib
2020-12-13T22:11:14,529   copying cnvlib/params.py -> build/lib/cnvlib
2020-12-13T22:11:14,532   copying cnvlib/scatter.py -> build/lib/cnvlib
2020-12-13T22:11:14,539   copying cnvlib/plots.py -> build/lib/cnvlib
2020-12-13T22:11:14,544   copying cnvlib/heatmap.py -> build/lib/cnvlib
2020-12-13T22:11:14,549   copying cnvlib/samutil.py -> build/lib/cnvlib
2020-12-13T22:11:14,555   copying cnvlib/core.py -> build/lib/cnvlib
2020-12-13T22:11:14,561   copying cnvlib/cmdutil.py -> build/lib/cnvlib
2020-12-13T22:11:14,566   copying cnvlib/smoothing.py -> build/lib/cnvlib
2020-12-13T22:11:14,573   copying cnvlib/target.py -> build/lib/cnvlib
2020-12-13T22:11:14,579   copying cnvlib/batch.py -> build/lib/cnvlib
2020-12-13T22:11:14,585   copying cnvlib/reports.py -> build/lib/cnvlib
2020-12-13T22:11:14,592   copying cnvlib/importers.py -> build/lib/cnvlib
2020-12-13T22:11:14,598   copying cnvlib/parallel.py -> build/lib/cnvlib
2020-12-13T22:11:14,603   copying cnvlib/commands.py -> build/lib/cnvlib
2020-12-13T22:11:14,617   copying cnvlib/segmetrics.py -> build/lib/cnvlib
2020-12-13T22:11:14,623   creating build/lib/cnvlib/segmentation
2020-12-13T22:11:14,625   copying cnvlib/segmentation/cbs.py -> build/lib/cnvlib/segmentation
2020-12-13T22:11:14,630   copying cnvlib/segmentation/haar.py -> build/lib/cnvlib/segmentation
2020-12-13T22:11:14,638   copying cnvlib/segmentation/none.py -> build/lib/cnvlib/segmentation
2020-12-13T22:11:14,643   copying cnvlib/segmentation/hmm.py -> build/lib/cnvlib/segmentation
2020-12-13T22:11:14,650   copying cnvlib/segmentation/flasso.py -> build/lib/cnvlib/segmentation
2020-12-13T22:11:14,654   copying cnvlib/segmentation/__init__.py -> build/lib/cnvlib/segmentation
2020-12-13T22:11:14,662   creating build/lib/skgenome
2020-12-13T22:11:14,664   copying skgenome/rangelabel.py -> build/lib/skgenome
2020-12-13T22:11:14,669   copying skgenome/merge.py -> build/lib/skgenome
2020-12-13T22:11:14,675   copying skgenome/chromsort.py -> build/lib/skgenome
2020-12-13T22:11:14,681   copying skgenome/combiners.py -> build/lib/skgenome
2020-12-13T22:11:14,687   copying skgenome/subtract.py -> build/lib/skgenome
2020-12-13T22:11:14,693   copying skgenome/intersect.py -> build/lib/skgenome
2020-12-13T22:11:14,698   copying skgenome/subdivide.py -> build/lib/skgenome
2020-12-13T22:11:14,702   copying skgenome/gary.py -> build/lib/skgenome
2020-12-13T22:11:14,709   copying skgenome/__init__.py -> build/lib/skgenome
2020-12-13T22:11:14,718   creating build/lib/skgenome/tabio
2020-12-13T22:11:14,721   copying skgenome/tabio/bedio.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,727   copying skgenome/tabio/vcfio.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,734   copying skgenome/tabio/tab.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,738   copying skgenome/tabio/picard.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,743   copying skgenome/tabio/genepred.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,748   copying skgenome/tabio/textcoord.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,753   copying skgenome/tabio/seg.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,760   copying skgenome/tabio/gff.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,766   copying skgenome/tabio/util.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,771   copying skgenome/tabio/__init__.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,778   copying skgenome/tabio/vcfsimple.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,784   copying skgenome/tabio/seqdict.py -> build/lib/skgenome/tabio
2020-12-13T22:11:14,804   running build_scripts
2020-12-13T22:11:14,805   creating build/scripts-3.5
2020-12-13T22:11:14,808   copying and adjusting /tmp/pip-wheel-vz_dgfws/cnvkit/cnvkit.py -> build/scripts-3.5
2020-12-13T22:11:14,812   copying and adjusting /tmp/pip-wheel-vz_dgfws/cnvkit/scripts/cnv_expression_correlate.py -> build/scripts-3.5
2020-12-13T22:11:14,817   copying and adjusting /tmp/pip-wheel-vz_dgfws/cnvkit/scripts/cnv_updater.py -> build/scripts-3.5
2020-12-13T22:11:14,821   copying and adjusting /tmp/pip-wheel-vz_dgfws/cnvkit/scripts/skg_convert.py -> build/scripts-3.5
2020-12-13T22:11:14,825   copying and adjusting /tmp/pip-wheel-vz_dgfws/cnvkit/scripts/reference2targets.py -> build/scripts-3.5
2020-12-13T22:11:14,829   copying and adjusting /tmp/pip-wheel-vz_dgfws/cnvkit/scripts/guess_baits.py -> build/scripts-3.5
2020-12-13T22:11:14,835   copying and adjusting /tmp/pip-wheel-vz_dgfws/cnvkit/scripts/cnv_annotate.py -> build/scripts-3.5
2020-12-13T22:11:14,836   changing mode of build/scripts-3.5/cnvkit.py from 644 to 755
2020-12-13T22:11:14,837   changing mode of build/scripts-3.5/cnv_expression_correlate.py from 644 to 755
2020-12-13T22:11:14,838   changing mode of build/scripts-3.5/cnv_updater.py from 644 to 755
2020-12-13T22:11:14,839   changing mode of build/scripts-3.5/skg_convert.py from 644 to 755
2020-12-13T22:11:14,841   changing mode of build/scripts-3.5/reference2targets.py from 644 to 755
2020-12-13T22:11:14,842   changing mode of build/scripts-3.5/guess_baits.py from 644 to 755
2020-12-13T22:11:14,843   changing mode of build/scripts-3.5/cnv_annotate.py from 644 to 755
2020-12-13T22:11:14,853   installing to build/bdist.linux-armv7l/wheel
2020-12-13T22:11:14,854   running install
2020-12-13T22:11:14,858   running install_lib
2020-12-13T22:11:14,867   creating build/bdist.linux-armv7l
2020-12-13T22:11:14,867   creating build/bdist.linux-armv7l/wheel
2020-12-13T22:11:14,871   creating build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,874   copying build/lib/skgenome/rangelabel.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,880   creating build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,883   copying build/lib/skgenome/tabio/bedio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,889   copying build/lib/skgenome/tabio/vcfio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,896   copying build/lib/skgenome/tabio/tab.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,902   copying build/lib/skgenome/tabio/picard.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,909   copying build/lib/skgenome/tabio/genepred.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,917   copying build/lib/skgenome/tabio/textcoord.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,923   copying build/lib/skgenome/tabio/seg.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,929   copying build/lib/skgenome/tabio/gff.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,934   copying build/lib/skgenome/tabio/util.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,939   copying build/lib/skgenome/tabio/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,947   copying build/lib/skgenome/tabio/vcfsimple.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,954   copying build/lib/skgenome/tabio/seqdict.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2020-12-13T22:11:14,961   copying build/lib/skgenome/merge.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,968   copying build/lib/skgenome/chromsort.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,973   copying build/lib/skgenome/combiners.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,978   copying build/lib/skgenome/subtract.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,984   copying build/lib/skgenome/intersect.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,992   copying build/lib/skgenome/subdivide.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:14,999   copying build/lib/skgenome/gary.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:15,008   copying build/lib/skgenome/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome
2020-12-13T22:11:15,015   creating build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,018   copying build/lib/cnvlib/rna.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,026   copying build/lib/cnvlib/export.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,036   copying build/lib/cnvlib/segfilters.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,044   copying build/lib/cnvlib/antitarget.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,050   copying build/lib/cnvlib/cnary.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,057   copying build/lib/cnvlib/vary.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,063   copying build/lib/cnvlib/bintest.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,070   copying build/lib/cnvlib/autobin.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,078   copying build/lib/cnvlib/coverage.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,086   copying build/lib/cnvlib/import_rna.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,091   copying build/lib/cnvlib/metrics.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,095   copying build/lib/cnvlib/_version.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,099   copying build/lib/cnvlib/cluster.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,104   copying build/lib/cnvlib/access.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,110   copying build/lib/cnvlib/reference.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,118   copying build/lib/cnvlib/descriptives.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,125   copying build/lib/cnvlib/fix.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,132   copying build/lib/cnvlib/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,138   copying build/lib/cnvlib/diagram.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,144   copying build/lib/cnvlib/call.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,150   copying build/lib/cnvlib/params.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,154   copying build/lib/cnvlib/scatter.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,161   copying build/lib/cnvlib/plots.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,168   copying build/lib/cnvlib/heatmap.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,174   copying build/lib/cnvlib/samutil.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,181   copying build/lib/cnvlib/core.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,188   copying build/lib/cnvlib/cmdutil.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,195   creating build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2020-12-13T22:11:15,198   copying build/lib/cnvlib/segmentation/cbs.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2020-12-13T22:11:15,204   copying build/lib/cnvlib/segmentation/haar.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2020-12-13T22:11:15,211   copying build/lib/cnvlib/segmentation/none.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2020-12-13T22:11:15,215   copying build/lib/cnvlib/segmentation/hmm.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2020-12-13T22:11:15,221   copying build/lib/cnvlib/segmentation/flasso.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2020-12-13T22:11:15,225   copying build/lib/cnvlib/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2020-12-13T22:11:15,233   copying build/lib/cnvlib/smoothing.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,240   copying build/lib/cnvlib/target.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,246   copying build/lib/cnvlib/batch.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,253   copying build/lib/cnvlib/reports.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,260   copying build/lib/cnvlib/importers.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,266   copying build/lib/cnvlib/parallel.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,272   copying build/lib/cnvlib/commands.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,287   copying build/lib/cnvlib/segmetrics.py -> build/bdist.linux-armv7l/wheel/cnvlib
2020-12-13T22:11:15,293   running install_egg_info
2020-12-13T22:11:15,342   running egg_info
2020-12-13T22:11:15,343   writing dependency_links to CNVkit.egg-info/dependency_links.txt
2020-12-13T22:11:15,346   writing top-level names to CNVkit.egg-info/top_level.txt
2020-12-13T22:11:15,349   writing requirements to CNVkit.egg-info/requires.txt
2020-12-13T22:11:15,351   writing CNVkit.egg-info/PKG-INFO
2020-12-13T22:11:15,376   reading manifest file 'CNVkit.egg-info/SOURCES.txt'
2020-12-13T22:11:15,420   writing manifest file 'CNVkit.egg-info/SOURCES.txt'
2020-12-13T22:11:15,424   Copying CNVkit.egg-info to build/bdist.linux-armv7l/wheel/CNVkit-0.9.8-py3.5.egg-info
2020-12-13T22:11:15,453   running install_scripts
2020-12-13T22:11:15,591   creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data
2020-12-13T22:11:15,591   creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,594   copying build/scripts-3.5/cnv_expression_correlate.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,600   copying build/scripts-3.5/cnv_updater.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,604   copying build/scripts-3.5/skg_convert.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,609   copying build/scripts-3.5/reference2targets.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,615   copying build/scripts-3.5/cnvkit.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,620   copying build/scripts-3.5/guess_baits.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,628   copying build/scripts-3.5/cnv_annotate.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts
2020-12-13T22:11:15,632   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts/cnv_expression_correlate.py to 755
2020-12-13T22:11:15,634   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts/cnv_updater.py to 755
2020-12-13T22:11:15,635   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts/skg_convert.py to 755
2020-12-13T22:11:15,636   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts/reference2targets.py to 755
2020-12-13T22:11:15,637   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts/cnvkit.py to 755
2020-12-13T22:11:15,638   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts/guess_baits.py to 755
2020-12-13T22:11:15,639   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.data/scripts/cnv_annotate.py to 755
2020-12-13T22:11:15,738   creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.8.dist-info/WHEEL
2020-12-13T22:11:16,325   Building wheel for cnvkit (setup.py): finished with status 'done'
2020-12-13T22:11:16,333   Created wheel for cnvkit: filename=CNVkit-0.9.8-py2.py3-none-any.whl size=185708 sha256=c6865d243855e72177e842af4fb22ae7d5900d735da3559727e5652fb8c75ab9
2020-12-13T22:11:16,334   Stored in directory: /tmp/pip-ephem-wheel-cache-q73xyz9b/wheels/cf/b5/e0/ae7accb97d012f6cff3213ae52cf71a8ec9180f566fbe28e99
2020-12-13T22:11:16,338 Successfully built cnvkit
2020-12-13T22:11:16,378 Removed build tracker: '/tmp/pip-req-tracker-0mm3zfp0'