2020-12-15T19:50:43,069 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-12-15T19:50:43,746 Created temporary directory: /tmp/pip-ephem-wheel-cache-gflz_5nm
2020-12-15T19:50:43,751 Created temporary directory: /tmp/pip-req-tracker-6qfa33ci
2020-12-15T19:50:43,752 Initialized build tracking at /tmp/pip-req-tracker-6qfa33ci
2020-12-15T19:50:43,752 Created build tracker: /tmp/pip-req-tracker-6qfa33ci
2020-12-15T19:50:43,753 Entered build tracker: /tmp/pip-req-tracker-6qfa33ci
2020-12-15T19:50:43,754 Created temporary directory: /tmp/pip-wheel-5ulx63nf
2020-12-15T19:50:43,774 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-12-15T19:50:43,777 2 location(s) to search for versions of rcsb-utils-chem:
2020-12-15T19:50:43,777 * https://pypi.org/simple/rcsb-utils-chem/
2020-12-15T19:50:43,777 * https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-12-15T19:50:43,777 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-utils-chem/
2020-12-15T19:50:43,780 Getting page https://pypi.org/simple/rcsb-utils-chem/
2020-12-15T19:50:43,784 Found index url https://pypi.org/simple
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2020-12-15T19:50:44,547   Found link https://files.pythonhosted.org/packages/0a/98/5bcd260d4335b0ceffe55f07718a88be892c1cb35bf581cebd1dbb3f7e57/rcsb.utils.chem-0.39-py2.py3-none-any.whl#sha256=160d09164c094b17ab74226ad917af500c05c30f4d5f9e6ea705ed17a732f367 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-12-15T19:50:44,548   Found link https://files.pythonhosted.org/packages/23/70/31a548e2597ba4673b3175b995e181b623e4c747e37c17df2ca582254f55/rcsb.utils.chem-0.39.tar.gz#sha256=3dc0a2b82a1f87025a5ade1c79734ec98a51edd9c33dfeaac7e9bd53050c8887 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-12-15T19:50:44,549   Found link https://files.pythonhosted.org/packages/16/1d/3890ea594852c3e66b9477c5f63add9d5581117f98a32c05ee3cd9e66f86/rcsb.utils.chem-0.40-py2.py3-none-any.whl#sha256=18e628af1e06a49c78f2dc312c9e3609ef21667559f6208788ae735952ebbfe5 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-12-15T19:50:44,550   Found link https://files.pythonhosted.org/packages/ae/6e/b68046b1cc8f0f7c3f462d2591ec63061e8fb6cd17ab41bab3d60661b792/rcsb.utils.chem-0.40.tar.gz#sha256=dfb8d44085326ad310fb773c776317420b592bf63a8b449381bf79293ff0479b (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-12-15T19:50:44,551   Found link https://files.pythonhosted.org/packages/32/55/ef2b128f8fb60a0b8ca1c7c8ee2ef5925b52664e8a2eb04271c26f45b4be/rcsb.utils.chem-0.41-py2.py3-none-any.whl#sha256=17437217dd8bbabf4ed399a27a647a0cd53405037966e0e4322ac90994abf505 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-12-15T19:50:44,552   Found link https://files.pythonhosted.org/packages/66/e5/53afaa02860c8eff39ff2c8931ced37f4ff2c3f53ec2e39d6dde071bdeb6/rcsb.utils.chem-0.41.tar.gz#sha256=af8a785c4b421d96cc12558add6109fbf1d4214c8b3973cbe66e9f027ca962c2 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-12-15T19:50:44,553   Found link https://files.pythonhosted.org/packages/48/b4/e4302c54cb810233dc0fd8b98be5e0fc89e5fc8b6a7f3bcdd12897efacf1/rcsb.utils.chem-0.42.tar.gz#sha256=f4d0f409dff8510e5193127c0da4882443860ee4e4084ac9a5ecc6ecdf2d9e74 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.42
2020-12-15T19:50:44,554   Found link https://files.pythonhosted.org/packages/cc/17/dc085272edf1a807b80df64aa51a233b41305b863cf8de95e7b339c45d86/rcsb.utils.chem-0.43.tar.gz#sha256=7a529bde69e6dfaa1951bd9fb185d8cae922668c1c16f9dcbb7f794df2c0a051 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.43
2020-12-15T19:50:44,555   Found link https://files.pythonhosted.org/packages/d0/0c/25539acbdf220d74a65ee9aaffb83f8a4c0749ba894816cb95efc6f993e6/rcsb.utils.chem-0.45.tar.gz#sha256=5965c277172093334642bb339cbdcfeabf97229d9e04600698b15cdca2e0490b (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.45
2020-12-15T19:50:44,556   Found link https://files.pythonhosted.org/packages/c4/88/393af3a0dc320e6564464a602d6bd5505264a79d6ac85d422a5309fdf249/rcsb.utils.chem-0.46.tar.gz#sha256=8b6f27fb7bde94db1ff8326373400ea2685166897f8a608dee0c3b35de879d72 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.46
2020-12-15T19:50:44,557   Found link https://files.pythonhosted.org/packages/ea/ec/b15f27f9bade5197117a66a8ca4e3ccddbe1d75329b455b247e0ebeb48ff/rcsb.utils.chem-0.47.tar.gz#sha256=38a34f5e5e7fc51d3e2c29282168828923966348205311d7964a19dc5020b4b7 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.47
2020-12-15T19:50:44,557 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-12-15T19:50:44,558 Getting page https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-12-15T19:50:44,561 Found index url https://pypi.ngc.nvidia.com
2020-12-15T19:50:45,623 Could not fetch URL https://pypi.ngc.nvidia.com/rcsb-utils-chem/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/rcsb-utils-chem/ - skipping
2020-12-15T19:50:45,664 Given no hashes to check 1 links for project 'rcsb-utils-chem': discarding no candidates
2020-12-15T19:50:45,667 Using version 0.47 (newest of versions: 0.47)
2020-12-15T19:50:45,676 Collecting rcsb-utils-chem==0.47
2020-12-15T19:50:45,681   Created temporary directory: /tmp/pip-unpack-_66g9xof
2020-12-15T19:50:45,909   Downloading rcsb.utils.chem-0.47.tar.gz (65 kB)
2020-12-15T19:50:46,244   Added rcsb-utils-chem==0.47 from https://files.pythonhosted.org/packages/ea/ec/b15f27f9bade5197117a66a8ca4e3ccddbe1d75329b455b247e0ebeb48ff/rcsb.utils.chem-0.47.tar.gz#sha256=38a34f5e5e7fc51d3e2c29282168828923966348205311d7964a19dc5020b4b7 to build tracker '/tmp/pip-req-tracker-6qfa33ci'
2020-12-15T19:50:46,248     Running setup.py (path:/tmp/pip-wheel-5ulx63nf/rcsb-utils-chem/setup.py) egg_info for package rcsb-utils-chem
2020-12-15T19:50:46,250     Created temporary directory: /tmp/pip-pip-egg-info-8uxdwmvy
2020-12-15T19:50:46,251     Running command python setup.py egg_info
2020-12-15T19:50:48,419     running egg_info
2020-12-15T19:50:48,426     creating /tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info
2020-12-15T19:50:48,428     writing requirements to /tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/requires.txt
2020-12-15T19:50:48,431     writing entry points to /tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/entry_points.txt
2020-12-15T19:50:48,433     writing /tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/PKG-INFO
2020-12-15T19:50:48,439     writing dependency_links to /tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/dependency_links.txt
2020-12-15T19:50:48,441     writing top-level names to /tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/top_level.txt
2020-12-15T19:50:48,448     writing manifest file '/tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-15T19:50:48,822     reading manifest file '/tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-15T19:50:48,826     reading manifest template 'MANIFEST.in'
2020-12-15T19:50:48,834     writing manifest file '/tmp/pip-pip-egg-info-8uxdwmvy/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-15T19:50:48,968   Source in /tmp/pip-wheel-5ulx63nf/rcsb-utils-chem has version 0.47, which satisfies requirement rcsb-utils-chem==0.47 from https://files.pythonhosted.org/packages/ea/ec/b15f27f9bade5197117a66a8ca4e3ccddbe1d75329b455b247e0ebeb48ff/rcsb.utils.chem-0.47.tar.gz#sha256=38a34f5e5e7fc51d3e2c29282168828923966348205311d7964a19dc5020b4b7
2020-12-15T19:50:48,970   Removed rcsb-utils-chem==0.47 from https://files.pythonhosted.org/packages/ea/ec/b15f27f9bade5197117a66a8ca4e3ccddbe1d75329b455b247e0ebeb48ff/rcsb.utils.chem-0.47.tar.gz#sha256=38a34f5e5e7fc51d3e2c29282168828923966348205311d7964a19dc5020b4b7 from build tracker '/tmp/pip-req-tracker-6qfa33ci'
2020-12-15T19:50:48,974 Building wheels for collected packages: rcsb-utils-chem
2020-12-15T19:50:48,982   Created temporary directory: /tmp/pip-wheel-2o2n7nm0
2020-12-15T19:50:48,983   Building wheel for rcsb-utils-chem (setup.py): started
2020-12-15T19:50:48,984   Destination directory: /tmp/pip-wheel-2o2n7nm0
2020-12-15T19:50:48,985   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5ulx63nf/rcsb-utils-chem/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5ulx63nf/rcsb-utils-chem/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2o2n7nm0
2020-12-15T19:50:51,166   running bdist_wheel
2020-12-15T19:50:51,181   running build
2020-12-15T19:50:51,182   running build_py
2020-12-15T19:50:51,520   creating build
2020-12-15T19:50:51,521   creating build/lib
2020-12-15T19:50:51,522   creating build/lib/rcsb
2020-12-15T19:50:51,525   copying rcsb/__init__.py -> build/lib/rcsb
2020-12-15T19:50:51,531   creating build/lib/rcsb/utils
2020-12-15T19:50:51,533   copying rcsb/utils/__init__.py -> build/lib/rcsb/utils
2020-12-15T19:50:51,547   creating build/lib/rcsb/utils/chem
2020-12-15T19:50:51,550   copying rcsb/utils/chem/ObMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,557   copying rcsb/utils/chem/RdMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,563   copying rcsb/utils/chem/OeIoUtils.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,571   copying rcsb/utils/chem/IoUtils.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,576   copying rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,582   copying rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,589   copying rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,597   copying rcsb/utils/chem/OeMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,607   copying rcsb/utils/chem/OeDepict.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,613   copying rcsb/utils/chem/ChemCompSearchWrapper.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,620   copying rcsb/utils/chem/ChemCompIndexProvider.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,627   copying rcsb/utils/chem/OeMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,634   copying rcsb/utils/chem/CactvsMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,641   copying rcsb/utils/chem/OeSubStructSearchUtils.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,648   copying rcsb/utils/chem/cactvsAnnotateMol.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,654   copying rcsb/utils/chem/OeDepictAlign.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,664   copying rcsb/utils/chem/__init__.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,668   copying rcsb/utils/chem/MolecularFormula.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,672   copying rcsb/utils/chem/ChemCompDepictWrapper.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,678   copying rcsb/utils/chem/OeSearchUtils.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,684   copying rcsb/utils/chem/FailList.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,700   copying rcsb/utils/chem/PdbxChemCompConstants.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,706   copying rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,713   copying rcsb/utils/chem/OeCommonUtils.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,719   copying rcsb/utils/chem/PdbxChemComp.py -> build/lib/rcsb/utils/chem
2020-12-15T19:50:51,755   installing to build/bdist.linux-armv7l/wheel
2020-12-15T19:50:51,756   running install
2020-12-15T19:50:51,758   running install_lib
2020-12-15T19:50:51,766   creating build/bdist.linux-armv7l
2020-12-15T19:50:51,767   creating build/bdist.linux-armv7l/wheel
2020-12-15T19:50:51,770   creating build/bdist.linux-armv7l/wheel/rcsb
2020-12-15T19:50:51,775   creating build/bdist.linux-armv7l/wheel/rcsb/utils
2020-12-15T19:50:51,778   copying build/lib/rcsb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils
2020-12-15T19:50:51,784   creating build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,787   copying build/lib/rcsb/utils/chem/ObMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,794   copying build/lib/rcsb/utils/chem/RdMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,801   copying build/lib/rcsb/utils/chem/OeIoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,810   copying build/lib/rcsb/utils/chem/IoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,818   copying build/lib/rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,825   copying build/lib/rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,832   copying build/lib/rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,840   copying build/lib/rcsb/utils/chem/OeMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,850   copying build/lib/rcsb/utils/chem/OeDepict.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,857   copying build/lib/rcsb/utils/chem/ChemCompSearchWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,866   copying build/lib/rcsb/utils/chem/ChemCompIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,873   copying build/lib/rcsb/utils/chem/OeMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,880   copying build/lib/rcsb/utils/chem/CactvsMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,887   copying build/lib/rcsb/utils/chem/OeSubStructSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,894   copying build/lib/rcsb/utils/chem/cactvsAnnotateMol.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,900   copying build/lib/rcsb/utils/chem/OeDepictAlign.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,909   copying build/lib/rcsb/utils/chem/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,913   copying build/lib/rcsb/utils/chem/MolecularFormula.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,917   copying build/lib/rcsb/utils/chem/ChemCompDepictWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,923   copying build/lib/rcsb/utils/chem/OeSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,929   copying build/lib/rcsb/utils/chem/FailList.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,944   copying build/lib/rcsb/utils/chem/PdbxChemCompConstants.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,950   copying build/lib/rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,957   copying build/lib/rcsb/utils/chem/OeCommonUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,963   copying build/lib/rcsb/utils/chem/PdbxChemComp.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-12-15T19:50:51,970   copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb
2020-12-15T19:50:51,975   running install_egg_info
2020-12-15T19:50:52,023   running egg_info
2020-12-15T19:50:52,024   writing entry points to rcsb.utils.chem.egg-info/entry_points.txt
2020-12-15T19:50:52,027   writing rcsb.utils.chem.egg-info/PKG-INFO
2020-12-15T19:50:52,031   writing top-level names to rcsb.utils.chem.egg-info/top_level.txt
2020-12-15T19:50:52,033   writing requirements to rcsb.utils.chem.egg-info/requires.txt
2020-12-15T19:50:52,036   writing dependency_links to rcsb.utils.chem.egg-info/dependency_links.txt
2020-12-15T19:50:52,049   reading manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-15T19:50:52,054   reading manifest template 'MANIFEST.in'
2020-12-15T19:50:52,064   writing manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-12-15T19:50:52,067   Copying rcsb.utils.chem.egg-info to build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.47-py3.5.egg-info
2020-12-15T19:50:52,105   running install_scripts
2020-12-15T19:50:52,328   creating build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.47.dist-info/WHEEL
2020-12-15T19:50:52,699   Building wheel for rcsb-utils-chem (setup.py): finished with status 'done'
2020-12-15T19:50:52,704   Created wheel for rcsb-utils-chem: filename=rcsb.utils.chem-0.47-py2.py3-none-any.whl size=82868 sha256=bb7f80581760e725de8b26446d56702c0fb85d25658c0ef498830b3bebde5530
2020-12-15T19:50:52,705   Stored in directory: /tmp/pip-ephem-wheel-cache-gflz_5nm/wheels/46/9d/6b/36a937dbc8e2b31eec8ddb2dea5e7c9dc0cf7cd1b2933dd16d
2020-12-15T19:50:52,709 Successfully built rcsb-utils-chem
2020-12-15T19:50:52,730 Removed build tracker: '/tmp/pip-req-tracker-6qfa33ci'