2020-12-16T17:34:33,293 Created temporary directory: /tmp/pip-ephem-wheel-cache-yj05wvac
2020-12-16T17:34:33,296 Created temporary directory: /tmp/pip-req-tracker-_8y5gnt8
2020-12-16T17:34:33,296 Initialized build tracking at /tmp/pip-req-tracker-_8y5gnt8
2020-12-16T17:34:33,296 Created build tracker: /tmp/pip-req-tracker-_8y5gnt8
2020-12-16T17:34:33,297 Entered build tracker: /tmp/pip-req-tracker-_8y5gnt8
2020-12-16T17:34:33,297 Created temporary directory: /tmp/pip-wheel-u7wi1oj4
2020-12-16T17:34:33,307 1 location(s) to search for versions of acellera-htmd:
2020-12-16T17:34:33,307 * https://pypi.org/simple/acellera-htmd/
2020-12-16T17:34:33,307 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/
2020-12-16T17:34:33,308 Getting page https://pypi.org/simple/acellera-htmd/
2020-12-16T17:34:33,309 Found index url https://pypi.org/simple
2020-12-16T17:34:33,667   Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz#sha256=82412123b08dae2961ba4da131942e4f92be7d13ee24cc8ec4f092ef4b022d6f (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2
2020-12-16T17:34:33,667   Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz#sha256=827b5f6ef861b48609d20cd5d7a5d8df29f55b4d58fdb9f307a66361f43cb3d7 (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4
2020-12-16T17:34:33,668   Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz#sha256=4144d5a6ac1ff10592115de152f7c5561a1b7f1b9056cc7c911bdd2b7ea06a62 (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5
2020-12-16T17:34:33,668   Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz#sha256=dd0a5442ab87c97c06f5674cd3867856c0215f89d5244611035e68db6b32cfed (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6
2020-12-16T17:34:33,672 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates
2020-12-16T17:34:33,673 Using version 1.23.6 (newest of versions: 1.23.6)
2020-12-16T17:34:33,676 Collecting acellera-htmd==1.23.6
2020-12-16T17:34:33,678   Created temporary directory: /tmp/pip-unpack-j1uh0_fu
2020-12-16T17:34:33,724   Downloading acellera-htmd-1.23.6.tar.gz (851 kB)
2020-12-16T17:34:34,728   Added acellera-htmd==1.23.6 from https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz#sha256=dd0a5442ab87c97c06f5674cd3867856c0215f89d5244611035e68db6b32cfed to build tracker '/tmp/pip-req-tracker-_8y5gnt8'
2020-12-16T17:34:34,729     Running setup.py (path:/tmp/pip-wheel-u7wi1oj4/acellera-htmd/setup.py) egg_info for package acellera-htmd
2020-12-16T17:34:34,730     Created temporary directory: /tmp/pip-pip-egg-info-mvrv8qcq
2020-12-16T17:34:34,731     Running command python setup.py egg_info
2020-12-16T17:34:35,554     fatal: not a git repository (or any of the parent directories): .git
2020-12-16T17:34:35,766     Could not get version tag. Defaulting to version 0
2020-12-16T17:34:35,766     running egg_info
2020-12-16T17:34:35,768     creating /tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info
2020-12-16T17:34:35,770     writing /tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/PKG-INFO
2020-12-16T17:34:35,773     writing dependency_links to /tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/dependency_links.txt
2020-12-16T17:34:35,775     writing entry points to /tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/entry_points.txt
2020-12-16T17:34:35,777     writing requirements to /tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/requires.txt
2020-12-16T17:34:35,778     writing top-level names to /tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/top_level.txt
2020-12-16T17:34:35,780     writing manifest file '/tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/SOURCES.txt'
2020-12-16T17:34:35,959     reading manifest file '/tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/SOURCES.txt'
2020-12-16T17:34:35,962     reading manifest template 'MANIFEST.in'
2020-12-16T17:34:35,964     warning: no previously-included files matching '*' found under directory 'htmd/data'
2020-12-16T17:34:35,964     warning: no previously-included files matching '*' found under directory 'data'
2020-12-16T17:34:35,965     warning: no files found matching 'HTMD_LICENSE.txt'
2020-12-16T17:34:35,977     writing manifest file '/tmp/pip-pip-egg-info-mvrv8qcq/acellera_htmd.egg-info/SOURCES.txt'
2020-12-16T17:34:36,041   WARNING: Requested acellera-htmd==1.23.6 from https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz#sha256=dd0a5442ab87c97c06f5674cd3867856c0215f89d5244611035e68db6b32cfed, but installing version 0
2020-12-16T17:34:36,042   Removed acellera-htmd==1.23.6 from https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz#sha256=dd0a5442ab87c97c06f5674cd3867856c0215f89d5244611035e68db6b32cfed from build tracker '/tmp/pip-req-tracker-_8y5gnt8'
2020-12-16T17:34:36,044 Building wheels for collected packages: acellera-htmd
2020-12-16T17:34:36,049   Created temporary directory: /tmp/pip-wheel-63fhyo8u
2020-12-16T17:34:36,050   Building wheel for acellera-htmd (setup.py): started
2020-12-16T17:34:36,050   Destination directory: /tmp/pip-wheel-63fhyo8u
2020-12-16T17:34:36,050   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u7wi1oj4/acellera-htmd/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u7wi1oj4/acellera-htmd/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-63fhyo8u
2020-12-16T17:34:36,878   fatal: not a git repository (or any of the parent directories): .git
2020-12-16T17:34:36,879   Could not get version tag. Defaulting to version 0
2020-12-16T17:34:37,085   running bdist_wheel
2020-12-16T17:34:37,092   running build
2020-12-16T17:34:37,093   running build_py
2020-12-16T17:34:37,223   creating build
2020-12-16T17:34:37,224   creating build/lib
2020-12-16T17:34:37,224   creating build/lib/htmdx
2020-12-16T17:34:37,225   copying htmdx/__init__.py -> build/lib/htmdx
2020-12-16T17:34:37,227   copying htmdx/license.py -> build/lib/htmdx
2020-12-16T17:34:37,229   copying htmdx/cli.py -> build/lib/htmdx
2020-12-16T17:34:37,233   creating build/lib/htmd
2020-12-16T17:34:37,234   copying htmd/__init__.py -> build/lib/htmd
2020-12-16T17:34:37,237   copying htmd/versionwarnings.py -> build/lib/htmd
2020-12-16T17:34:37,240   copying htmd/numbautil.py -> build/lib/htmd
2020-12-16T17:34:37,242   copying htmd/latest.py -> build/lib/htmd
2020-12-16T17:34:37,245   copying htmd/modelhmm.py -> build/lib/htmd
2020-12-16T17:34:37,248   copying htmd/parallelprogress.py -> build/lib/htmd
2020-12-16T17:34:37,250   copying htmd/units.py -> build/lib/htmd
2020-12-16T17:34:37,253   copying htmd/config.py -> build/lib/htmd
2020-12-16T17:34:37,256   copying htmd/version.py -> build/lib/htmd
2020-12-16T17:34:37,258   copying htmd/kineticshmm.py -> build/lib/htmd
2020-12-16T17:34:37,261   copying htmd/ui.py -> build/lib/htmd
2020-12-16T17:34:37,264   copying htmd/util.py -> build/lib/htmd
2020-12-16T17:34:37,267   copying htmd/kinetics.py -> build/lib/htmd
2020-12-16T17:34:37,270   copying htmd/decorators.py -> build/lib/htmd
2020-12-16T17:34:37,273   copying htmd/pathplanning.py -> build/lib/htmd
2020-12-16T17:34:37,276   copying htmd/simlist.py -> build/lib/htmd
2020-12-16T17:34:37,279   copying htmd/dock.py -> build/lib/htmd
2020-12-16T17:34:37,282   copying htmd/mutualinformation.py -> build/lib/htmd
2020-12-16T17:34:37,284   copying htmd/metricdata.py -> build/lib/htmd
2020-12-16T17:34:37,289   copying htmd/session.py -> build/lib/htmd
2020-12-16T17:34:37,291   copying htmd/home.py -> build/lib/htmd
2020-12-16T17:34:37,294   copying htmd/model.py -> build/lib/htmd
2020-12-16T17:34:37,299   creating build/lib/htmd/membranebuilder
2020-12-16T17:34:37,300   copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder
2020-12-16T17:34:37,303   copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder
2020-12-16T17:34:37,306   copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder
2020-12-16T17:34:37,308   copying htmd/membranebuilder/pdbreporter.py -> build/lib/htmd/membranebuilder
2020-12-16T17:34:37,311   copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder
2020-12-16T17:34:37,314   copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder
2020-12-16T17:34:37,316   copying htmd/membranebuilder/simulate_openmm.py -> build/lib/htmd/membranebuilder
2020-12-16T17:34:37,320   creating build/lib/htmd/projections
2020-12-16T17:34:37,321   copying htmd/projections/tica.py -> build/lib/htmd/projections
2020-12-16T17:34:37,324   copying htmd/projections/__init__.py -> build/lib/htmd/projections
2020-12-16T17:34:37,326   copying htmd/projections/metriccoordinate.py -> build/lib/htmd/projections
2020-12-16T17:34:37,328   copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections
2020-12-16T17:34:37,330   copying htmd/projections/metrictmscore.py -> build/lib/htmd/projections
2020-12-16T17:34:37,332   copying htmd/projections/metricsecondarystructure.py -> build/lib/htmd/projections
2020-12-16T17:34:37,335   copying htmd/projections/metricplumed2.py -> build/lib/htmd/projections
2020-12-16T17:34:37,337   copying htmd/projections/metricsasa.py -> build/lib/htmd/projections
2020-12-16T17:34:37,339   copying htmd/projections/metricdistance.py -> build/lib/htmd/projections
2020-12-16T17:34:37,341   copying htmd/projections/metricsphericalcoordinate.py -> build/lib/htmd/projections
2020-12-16T17:34:37,343   copying htmd/projections/metricrmsd.py -> build/lib/htmd/projections
2020-12-16T17:34:37,346   copying htmd/projections/metric.py -> build/lib/htmd/projections
2020-12-16T17:34:37,348   copying htmd/projections/gwpca.py -> build/lib/htmd/projections
2020-12-16T17:34:37,350   copying htmd/projections/metricdihedral.py -> build/lib/htmd/projections
2020-12-16T17:34:37,353   copying htmd/projections/metricfluctuation.py -> build/lib/htmd/projections
2020-12-16T17:34:37,355   copying htmd/projections/metricshell.py -> build/lib/htmd/projections
2020-12-16T17:34:37,358   creating build/lib/htmd/builder
2020-12-16T17:34:37,359   copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder
2020-12-16T17:34:37,362   copying htmd/builder/__init__.py -> build/lib/htmd/builder
2020-12-16T17:34:37,363   copying htmd/builder/preparation.py -> build/lib/htmd/builder
2020-12-16T17:34:37,366   copying htmd/builder/charmm.py -> build/lib/htmd/builder
2020-12-16T17:34:37,369   copying htmd/builder/builder.py -> build/lib/htmd/builder
2020-12-16T17:34:37,372   copying htmd/builder/solvate.py -> build/lib/htmd/builder
2020-12-16T17:34:37,374   copying htmd/builder/ionize.py -> build/lib/htmd/builder
2020-12-16T17:34:37,377   copying htmd/builder/amber.py -> build/lib/htmd/builder
2020-12-16T17:34:37,381   creating build/lib/htmd/apps
2020-12-16T17:34:37,382   copying htmd/apps/__init__.py -> build/lib/htmd/apps
2020-12-16T17:34:37,384   copying htmd/apps/pmemd.py -> build/lib/htmd/apps
2020-12-16T17:34:37,388   copying htmd/apps/acemd.py -> build/lib/htmd/apps
2020-12-16T17:34:37,392   creating build/lib/htmd/protocols
2020-12-16T17:34:37,393   copying htmd/protocols/__init__.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,395   copying htmd/protocols/production_v4.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,398   copying htmd/protocols/equilibration_v3.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,401   copying htmd/protocols/pmemdproduction.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,404   copying htmd/protocols/equilibration_v1.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,408   copying htmd/protocols/production_v2.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,411   copying htmd/protocols/production_v3.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,414   copying htmd/protocols/oldprotocolinterface.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,417   copying htmd/protocols/production_v5.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,420   copying htmd/protocols/equilibration_v2.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,423   copying htmd/protocols/production_v6.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,426   copying htmd/protocols/production_v1.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,428   copying htmd/protocols/pmemdequilibration.py -> build/lib/htmd/protocols
2020-12-16T17:34:37,432   creating build/lib/htmd/molecule
2020-12-16T17:34:37,433   copying htmd/molecule/__init__.py -> build/lib/htmd/molecule
2020-12-16T17:34:37,435   copying htmd/molecule/molecule.py -> build/lib/htmd/molecule
2020-12-16T17:34:37,437   copying htmd/molecule/util.py -> build/lib/htmd/molecule
2020-12-16T17:34:37,440   creating build/lib/htmd/mdengine
2020-12-16T17:34:37,441   copying htmd/mdengine/__init__.py -> build/lib/htmd/mdengine
2020-12-16T17:34:37,443   creating build/lib/htmd/clustering
2020-12-16T17:34:37,444   copying htmd/clustering/__init__.py -> build/lib/htmd/clustering
2020-12-16T17:34:37,446   copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering
2020-12-16T17:34:37,449   copying htmd/clustering/regular.py -> build/lib/htmd/clustering
2020-12-16T17:34:37,452   creating build/lib/htmd/adaptive
2020-12-16T17:34:37,453   copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive
2020-12-16T17:34:37,455   copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive
2020-12-16T17:34:37,458   copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive
2020-12-16T17:34:37,461   copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive
2020-12-16T17:34:37,464   copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive
2020-12-16T17:34:37,467   copying htmd/adaptive/util.py -> build/lib/htmd/adaptive
2020-12-16T17:34:37,469   copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive
2020-12-16T17:34:37,473   creating build/lib/htmd/queues
2020-12-16T17:34:37,474   copying htmd/queues/__init__.py -> build/lib/htmd/queues
2020-12-16T17:34:37,476   copying htmd/queues/slurmqueue.py -> build/lib/htmd/queues
2020-12-16T17:34:37,478   copying htmd/queues/simqueue.py -> build/lib/htmd/queues
2020-12-16T17:34:37,480   copying htmd/queues/pbsqueue.py -> build/lib/htmd/queues
2020-12-16T17:34:37,482   copying htmd/queues/lsfqueue.py -> build/lib/htmd/queues
2020-12-16T17:34:37,485   copying htmd/queues/playqueue.py -> build/lib/htmd/queues
2020-12-16T17:34:37,487   copying htmd/queues/localqueue.py -> build/lib/htmd/queues
2020-12-16T17:34:37,490   creating build/lib/htmd/mdengine/acemd
2020-12-16T17:34:37,491   copying htmd/mdengine/acemd/__init__.py -> build/lib/htmd/mdengine/acemd
2020-12-16T17:34:37,493   copying htmd/mdengine/acemd/acemd.py -> build/lib/htmd/mdengine/acemd
2020-12-16T17:34:37,521   creating build/lib/htmd/share
2020-12-16T17:34:37,522   creating build/lib/htmd/share/membranebuilder
2020-12-16T17:34:37,522   creating build/lib/htmd/share/membranebuilder/lipids
2020-12-16T17:34:37,523   creating build/lib/htmd/share/membranebuilder/lipids/pope
2020-12-16T17:34:37,525   copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope
2020-12-16T17:34:37,528   creating build/lib/htmd/share/membranebuilder/lipids/chl1
2020-12-16T17:34:37,529   copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1
2020-12-16T17:34:37,532   creating build/lib/htmd/share/membranebuilder/lipids/popc
2020-12-16T17:34:37,533   copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc
2020-12-16T17:34:37,536   creating build/lib/htmd/share/builder
2020-12-16T17:34:37,536   creating build/lib/htmd/share/builder/charmmfiles
2020-12-16T17:34:37,537   creating build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,538   copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,546   copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,550   copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,558   copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,561   copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,566   copying htmd/share/builder/charmmfiles/par/par_all36_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,573   copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,581   copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,601   copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,608   copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:37,611   creating build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,612   copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,626   copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,631   copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,636   copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,641   copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,644   copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,663   copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,668   copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,673   copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:37,735   creating build/lib/htmd/share/builder/amberfiles
2020-12-16T17:34:37,736   creating build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,737   copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,740   copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,742   copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,745   copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,747   copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,750   copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,753   copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,756   copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,759   copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,762   copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,765   copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,768   copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,776   copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,780   copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,783   copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,786   copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,790   copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,793   copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,796   copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,800   copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,803   copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,807   copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,810   copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,814   copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,817   copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,820   copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,822   copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,825   copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,828   copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,830   copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,833   copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,836   copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,838   copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,841   copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,844   copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,846   copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,849   copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,851   copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,854   copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,856   copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,859   copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,861   copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,864   copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,866   copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,869   copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,871   copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,874   copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,876   copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,879   copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,881   copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,884   copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,886   copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,889   copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,891   copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,893   copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,896   copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,898   copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,901   copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,903   copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,906   copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,908   copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,911   copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,913   copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,916   copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,918   copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,921   copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,923   copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:37,926   creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:37,927   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:37,932   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:37,934   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:37,937   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:37,940   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:37,942   copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:37,945   creating build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,946   copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,949   copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,951   copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,958   copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,958   copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,959   copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,962   copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,965   copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,967   copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,970   copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,972   copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,975   copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,977   copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,980   copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,982   copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,985   copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,987   copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,989   copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,992   copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,994   copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,997   copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:37,999   copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,002   copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,006   copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,009   copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,011   creating build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,012   copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,015   copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,017   copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,020   copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,022   copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,025   copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,027   copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,030   copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,032   copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,035   copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,038   copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,042   copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,044   creating build/lib/htmd/share/mdengine
2020-12-16T17:34:38,045   creating build/lib/htmd/share/mdengine/acemd
2020-12-16T17:34:38,045   creating build/lib/htmd/share/mdengine/acemd/config
2020-12-16T17:34:38,047   copying htmd/share/mdengine/acemd/config/production.json -> build/lib/htmd/share/mdengine/acemd/config
2020-12-16T17:34:38,049   copying htmd/share/mdengine/acemd/config/equilibration.json -> build/lib/htmd/share/mdengine/acemd/config
2020-12-16T17:34:38,052   copying htmd/logging.ini -> build/lib/htmd
2020-12-16T17:34:38,071   installing to build/bdist.linux-armv7l/wheel
2020-12-16T17:34:38,071   running install
2020-12-16T17:34:38,072   running install_lib
2020-12-16T17:34:38,077   creating build/bdist.linux-armv7l
2020-12-16T17:34:38,077   creating build/bdist.linux-armv7l/wheel
2020-12-16T17:34:38,079   creating build/bdist.linux-armv7l/wheel/htmdx
2020-12-16T17:34:38,080   copying build/lib/htmdx/__init__.py -> build/bdist.linux-armv7l/wheel/htmdx
2020-12-16T17:34:38,082   copying build/lib/htmdx/license.py -> build/bdist.linux-armv7l/wheel/htmdx
2020-12-16T17:34:38,084   copying build/lib/htmdx/cli.py -> build/bdist.linux-armv7l/wheel/htmdx
2020-12-16T17:34:38,087   creating build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,088   copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,090   copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,093   copying build/lib/htmd/numbautil.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,095   copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,097   copying build/lib/htmd/modelhmm.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,100   creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,101   copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,103   copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,105   copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,107   copying build/lib/htmd/membranebuilder/pdbreporter.py -> build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,110   copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,112   copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,115   copying build/lib/htmd/membranebuilder/simulate_openmm.py -> build/bdist.linux-armv7l/wheel/htmd/membranebuilder
2020-12-16T17:34:38,118   creating build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,119   copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,122   copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,124   copying build/lib/htmd/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,126   copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,128   copying build/lib/htmd/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,130   copying build/lib/htmd/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,133   copying build/lib/htmd/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,135   copying build/lib/htmd/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,137   copying build/lib/htmd/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,139   copying build/lib/htmd/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,141   copying build/lib/htmd/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,143   copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,146   copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,148   copying build/lib/htmd/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,150   copying build/lib/htmd/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,152   copying build/lib/htmd/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/htmd/projections
2020-12-16T17:34:38,155   creating build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,156   copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,158   copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,160   copying build/lib/htmd/builder/preparation.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,162   copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,166   copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,168   copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,171   copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,173   copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/htmd/builder
2020-12-16T17:34:38,177   copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,179   copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,182   creating build/bdist.linux-armv7l/wheel/htmd/apps
2020-12-16T17:34:38,183   copying build/lib/htmd/apps/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/apps
2020-12-16T17:34:38,185   copying build/lib/htmd/apps/pmemd.py -> build/bdist.linux-armv7l/wheel/htmd/apps
2020-12-16T17:34:38,188   copying build/lib/htmd/apps/acemd.py -> build/bdist.linux-armv7l/wheel/htmd/apps
2020-12-16T17:34:38,191   copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,194   creating build/bdist.linux-armv7l/wheel/htmd/share
2020-12-16T17:34:38,196   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder
2020-12-16T17:34:38,198   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids
2020-12-16T17:34:38,200   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2020-12-16T17:34:38,201   copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope
2020-12-16T17:34:38,205   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2020-12-16T17:34:38,206   copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1
2020-12-16T17:34:38,210   creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2020-12-16T17:34:38,211   copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc
2020-12-16T17:34:38,215   creating build/bdist.linux-armv7l/wheel/htmd/share/builder
2020-12-16T17:34:38,217   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles
2020-12-16T17:34:38,219   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,220   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,229   copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,232   copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,240   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,244   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,248   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_prot.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,257   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,267   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,290   copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,296   copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par
2020-12-16T17:34:38,299   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,300   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,309   copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,312   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,316   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,320   copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,322   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,343   copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,349   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,354   copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top
2020-12-16T17:34:38,396   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles
2020-12-16T17:34:38,398   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,400   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,402   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,404   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,406   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,408   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,410   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,412   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,414   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,416   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,419   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,422   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,424   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,432   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,434   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,437   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,439   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,441   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,444   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,447   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,449   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,452   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,454   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,469   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,470   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,470   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,470   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,471   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,471   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,471   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,479   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,479   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,479   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,480   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,482   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,484   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,486   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,487   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,489   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,491   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,493   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,495   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,497   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,500   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,502   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,504   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,506   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,509   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,511   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,513   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,515   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,518   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,520   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,522   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,524   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,527   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,529   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,531   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,533   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,535   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,538   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,540   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,542   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,544   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,547   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,549   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,551   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,553   copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa
2020-12-16T17:34:38,556   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:38,557   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:38,563   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:38,565   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:38,567   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:38,570   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:38,572   copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15
2020-12-16T17:34:38,576   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,577   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,579   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,581   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,583   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,586   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,588   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,590   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,592   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,595   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,597   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,599   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,601   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,604   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,607   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,609   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,612   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,614   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,617   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,620   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,623   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,625   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,628   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,631   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,636   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,639   copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm
2020-12-16T17:34:38,642   creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,643   copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,646   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,649   copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,651   copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,654   copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,656   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,659   copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,661   copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,664   copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,667   copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,669   copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,673   copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors
2020-12-16T17:34:38,676   creating build/bdist.linux-armv7l/wheel/htmd/share/mdengine
2020-12-16T17:34:38,678   creating build/bdist.linux-armv7l/wheel/htmd/share/mdengine/acemd
2020-12-16T17:34:38,680   creating build/bdist.linux-armv7l/wheel/htmd/share/mdengine/acemd/config
2020-12-16T17:34:38,682   copying build/lib/htmd/share/mdengine/acemd/config/production.json -> build/bdist.linux-armv7l/wheel/htmd/share/mdengine/acemd/config
2020-12-16T17:34:38,685   copying build/lib/htmd/share/mdengine/acemd/config/equilibration.json -> build/bdist.linux-armv7l/wheel/htmd/share/mdengine/acemd/config
2020-12-16T17:34:38,688   copying build/lib/htmd/logging.ini -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,690   copying build/lib/htmd/version.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,693   creating build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,695   copying build/lib/htmd/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,697   copying build/lib/htmd/protocols/production_v4.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,701   copying build/lib/htmd/protocols/equilibration_v3.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,704   copying build/lib/htmd/protocols/pmemdproduction.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,707   copying build/lib/htmd/protocols/equilibration_v1.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,711   copying build/lib/htmd/protocols/production_v2.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,714   copying build/lib/htmd/protocols/production_v3.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,717   copying build/lib/htmd/protocols/oldprotocolinterface.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,720   copying build/lib/htmd/protocols/production_v5.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,724   copying build/lib/htmd/protocols/equilibration_v2.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,727   copying build/lib/htmd/protocols/production_v6.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,730   copying build/lib/htmd/protocols/production_v1.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,733   copying build/lib/htmd/protocols/pmemdequilibration.py -> build/bdist.linux-armv7l/wheel/htmd/protocols
2020-12-16T17:34:38,736   copying build/lib/htmd/kineticshmm.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,739   copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,742   creating build/bdist.linux-armv7l/wheel/htmd/molecule
2020-12-16T17:34:38,744   copying build/lib/htmd/molecule/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/molecule
2020-12-16T17:34:38,746   copying build/lib/htmd/molecule/molecule.py -> build/bdist.linux-armv7l/wheel/htmd/molecule
2020-12-16T17:34:38,748   copying build/lib/htmd/molecule/util.py -> build/bdist.linux-armv7l/wheel/htmd/molecule
2020-12-16T17:34:38,751   copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,754   copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,757   copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,760   copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,763   copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,766   copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,769   copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,772   copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,777   creating build/bdist.linux-armv7l/wheel/htmd/mdengine
2020-12-16T17:34:38,779   copying build/lib/htmd/mdengine/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/mdengine
2020-12-16T17:34:38,782   creating build/bdist.linux-armv7l/wheel/htmd/mdengine/acemd
2020-12-16T17:34:38,784   copying build/lib/htmd/mdengine/acemd/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/mdengine/acemd
2020-12-16T17:34:38,786   copying build/lib/htmd/mdengine/acemd/acemd.py -> build/bdist.linux-armv7l/wheel/htmd/mdengine/acemd
2020-12-16T17:34:38,790   copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,794   creating build/bdist.linux-armv7l/wheel/htmd/clustering
2020-12-16T17:34:38,795   copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/clustering
2020-12-16T17:34:38,798   copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/htmd/clustering
2020-12-16T17:34:38,801   copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/htmd/clustering
2020-12-16T17:34:38,804   copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,807   creating build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,809   copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,811   copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,814   copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,818   copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,821   copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,824   copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,827   copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/htmd/adaptive
2020-12-16T17:34:38,830   copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/htmd
2020-12-16T17:34:38,835   creating build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,836   copying build/lib/htmd/queues/__init__.py -> build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,839   copying build/lib/htmd/queues/slurmqueue.py -> build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,841   copying build/lib/htmd/queues/simqueue.py -> build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,844   copying build/lib/htmd/queues/pbsqueue.py -> build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,846   copying build/lib/htmd/queues/lsfqueue.py -> build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,849   copying build/lib/htmd/queues/playqueue.py -> build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,852   copying build/lib/htmd/queues/localqueue.py -> build/bdist.linux-armv7l/wheel/htmd/queues
2020-12-16T17:34:38,854   running install_egg_info
2020-12-16T17:34:38,878   running egg_info
2020-12-16T17:34:38,879   writing acellera_htmd.egg-info/PKG-INFO
2020-12-16T17:34:38,881   writing dependency_links to acellera_htmd.egg-info/dependency_links.txt
2020-12-16T17:34:38,884   writing entry points to acellera_htmd.egg-info/entry_points.txt
2020-12-16T17:34:38,886   writing requirements to acellera_htmd.egg-info/requires.txt
2020-12-16T17:34:38,887   writing top-level names to acellera_htmd.egg-info/top_level.txt
2020-12-16T17:34:38,905   reading manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2020-12-16T17:34:38,914   reading manifest template 'MANIFEST.in'
2020-12-16T17:34:38,916   warning: no previously-included files matching '*' found under directory 'htmd/data'
2020-12-16T17:34:38,917   warning: no previously-included files matching '*' found under directory 'data'
2020-12-16T17:34:38,918   warning: no files found matching 'HTMD_LICENSE.txt'
2020-12-16T17:34:38,934   writing manifest file 'acellera_htmd.egg-info/SOURCES.txt'
2020-12-16T17:34:38,936   Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/acellera_htmd-0-py3.7.egg-info
2020-12-16T17:34:38,951   running install_scripts
2020-12-16T17:34:39,047   creating build/bdist.linux-armv7l/wheel/acellera_htmd-0.dist-info/WHEEL
2020-12-16T17:34:39,050   creating '/tmp/pip-wheel-63fhyo8u/acellera_htmd-0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-12-16T17:34:39,055   adding 'htmd/__init__.py'
2020-12-16T17:34:39,057   adding 'htmd/config.py'
2020-12-16T17:34:39,059   adding 'htmd/decorators.py'
2020-12-16T17:34:39,061   adding 'htmd/dock.py'
2020-12-16T17:34:39,063   adding 'htmd/home.py'
2020-12-16T17:34:39,066   adding 'htmd/kinetics.py'
2020-12-16T17:34:39,069   adding 'htmd/kineticshmm.py'
2020-12-16T17:34:39,071   adding 'htmd/latest.py'
2020-12-16T17:34:39,073   adding 'htmd/logging.ini'
2020-12-16T17:34:39,079   adding 'htmd/metricdata.py'
2020-12-16T17:34:39,087   adding 'htmd/model.py'
2020-12-16T17:34:39,089   adding 'htmd/modelhmm.py'
2020-12-16T17:34:39,092   adding 'htmd/mutualinformation.py'
2020-12-16T17:34:39,093   adding 'htmd/numbautil.py'
2020-12-16T17:34:39,095   adding 'htmd/parallelprogress.py'
2020-12-16T17:34:39,097   adding 'htmd/pathplanning.py'
2020-12-16T17:34:39,099   adding 'htmd/session.py'
2020-12-16T17:34:39,102   adding 'htmd/simlist.py'
2020-12-16T17:34:39,104   adding 'htmd/ui.py'
2020-12-16T17:34:39,106   adding 'htmd/units.py'
2020-12-16T17:34:39,108   adding 'htmd/util.py'
2020-12-16T17:34:39,109   adding 'htmd/version.py'
2020-12-16T17:34:39,111   adding 'htmd/versionwarnings.py'
2020-12-16T17:34:39,113   adding 'htmd/adaptive/__init__.py'
2020-12-16T17:34:39,116   adding 'htmd/adaptive/adaptive.py'
2020-12-16T17:34:39,120   adding 'htmd/adaptive/adaptivebandit.py'
2020-12-16T17:34:39,123   adding 'htmd/adaptive/adaptivegoal.py'
2020-12-16T17:34:39,126   adding 'htmd/adaptive/adaptivegoaleg.py'
2020-12-16T17:34:39,128   adding 'htmd/adaptive/adaptiverun.py'
2020-12-16T17:34:39,130   adding 'htmd/adaptive/util.py'
2020-12-16T17:34:39,132   adding 'htmd/apps/__init__.py'
2020-12-16T17:34:39,134   adding 'htmd/apps/acemd.py'
2020-12-16T17:34:39,138   adding 'htmd/apps/pmemd.py'
2020-12-16T17:34:39,140   adding 'htmd/builder/__init__.py'
2020-12-16T17:34:39,147   adding 'htmd/builder/amber.py'
2020-12-16T17:34:39,150   adding 'htmd/builder/builder.py'
2020-12-16T17:34:39,155   adding 'htmd/builder/charmm.py'
2020-12-16T17:34:39,158   adding 'htmd/builder/ionize.py'
2020-12-16T17:34:39,160   adding 'htmd/builder/loopmodeler.py'
2020-12-16T17:34:39,161   adding 'htmd/builder/preparation.py'
2020-12-16T17:34:39,163   adding 'htmd/builder/solvate.py'
2020-12-16T17:34:39,166   adding 'htmd/clustering/__init__.py'
2020-12-16T17:34:39,167   adding 'htmd/clustering/kcenters.py'
2020-12-16T17:34:39,170   adding 'htmd/clustering/regular.py'
2020-12-16T17:34:39,172   adding 'htmd/mdengine/__init__.py'
2020-12-16T17:34:39,174   adding 'htmd/mdengine/acemd/__init__.py'
2020-12-16T17:34:39,178   adding 'htmd/mdengine/acemd/acemd.py'
2020-12-16T17:34:39,181   adding 'htmd/membranebuilder/__init__.py'
2020-12-16T17:34:39,183   adding 'htmd/membranebuilder/build_membrane.py'
2020-12-16T17:34:39,185   adding 'htmd/membranebuilder/globalminimization.py'
2020-12-16T17:34:39,187   adding 'htmd/membranebuilder/ljfluid.py'
2020-12-16T17:34:39,189   adding 'htmd/membranebuilder/pdbreporter.py'
2020-12-16T17:34:39,191   adding 'htmd/membranebuilder/ringpenetration.py'
2020-12-16T17:34:39,193   adding 'htmd/membranebuilder/simulate_openmm.py'
2020-12-16T17:34:39,195   adding 'htmd/molecule/__init__.py'
2020-12-16T17:34:39,197   adding 'htmd/molecule/molecule.py'
2020-12-16T17:34:39,198   adding 'htmd/molecule/util.py'
2020-12-16T17:34:39,200   adding 'htmd/projections/__init__.py'
2020-12-16T17:34:39,202   adding 'htmd/projections/gwpca.py'
2020-12-16T17:34:39,204   adding 'htmd/projections/kmeanstri.py'
2020-12-16T17:34:39,207   adding 'htmd/projections/metric.py'
2020-12-16T17:34:39,208   adding 'htmd/projections/metriccoordinate.py'
2020-12-16T17:34:39,210   adding 'htmd/projections/metricdihedral.py'
2020-12-16T17:34:39,211   adding 'htmd/projections/metricdistance.py'
2020-12-16T17:34:39,213   adding 'htmd/projections/metricfluctuation.py'
2020-12-16T17:34:39,214   adding 'htmd/projections/metricplumed2.py'
2020-12-16T17:34:39,216   adding 'htmd/projections/metricrmsd.py'
2020-12-16T17:34:39,217   adding 'htmd/projections/metricsasa.py'
2020-12-16T17:34:39,219   adding 'htmd/projections/metricsecondarystructure.py'
2020-12-16T17:34:39,220   adding 'htmd/projections/metricshell.py'
2020-12-16T17:34:39,222   adding 'htmd/projections/metricsphericalcoordinate.py'
2020-12-16T17:34:39,223   adding 'htmd/projections/metrictmscore.py'
2020-12-16T17:34:39,225   adding 'htmd/projections/tica.py'
2020-12-16T17:34:39,228   adding 'htmd/protocols/__init__.py'
2020-12-16T17:34:39,230   adding 'htmd/protocols/equilibration_v1.py'
2020-12-16T17:34:39,234   adding 'htmd/protocols/equilibration_v2.py'
2020-12-16T17:34:39,240   adding 'htmd/protocols/equilibration_v3.py'
2020-12-16T17:34:39,243   adding 'htmd/protocols/oldprotocolinterface.py'
2020-12-16T17:34:39,245   adding 'htmd/protocols/pmemdequilibration.py'
2020-12-16T17:34:39,247   adding 'htmd/protocols/pmemdproduction.py'
2020-12-16T17:34:39,249   adding 'htmd/protocols/production_v1.py'
2020-12-16T17:34:39,251   adding 'htmd/protocols/production_v2.py'
2020-12-16T17:34:39,254   adding 'htmd/protocols/production_v3.py'
2020-12-16T17:34:39,254   adding 'htmd/protocols/production_v4.py'
2020-12-16T17:34:39,257   adding 'htmd/protocols/production_v5.py'
2020-12-16T17:34:39,259   adding 'htmd/protocols/production_v6.py'
2020-12-16T17:34:39,261   adding 'htmd/queues/__init__.py'
2020-12-16T17:34:39,263   adding 'htmd/queues/localqueue.py'
2020-12-16T17:34:39,264   adding 'htmd/queues/lsfqueue.py'
2020-12-16T17:34:39,265   adding 'htmd/queues/pbsqueue.py'
2020-12-16T17:34:39,266   adding 'htmd/queues/playqueue.py'
2020-12-16T17:34:39,267   adding 'htmd/queues/simqueue.py'
2020-12-16T17:34:39,268   adding 'htmd/queues/slurmqueue.py'
2020-12-16T17:34:39,273   adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod'
2020-12-16T17:34:39,274   adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod'
2020-12-16T17:34:39,275   adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod'
2020-12-16T17:34:39,277   adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod'
2020-12-16T17:34:39,278   adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod'
2020-12-16T17:34:39,279   adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod'
2020-12-16T17:34:39,281   adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod'
2020-12-16T17:34:39,282   adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod'
2020-12-16T17:34:39,283   adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod'
2020-12-16T17:34:39,284   adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod'
2020-12-16T17:34:39,286   adding 'htmd/share/builder/amberfiles/cofactors/README.txt'
2020-12-16T17:34:39,295   adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in'
2020-12-16T17:34:39,299   adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod'
2020-12-16T17:34:39,300   adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod'
2020-12-16T17:34:39,301   adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod'
2020-12-16T17:34:39,303   adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod'
2020-12-16T17:34:39,304   adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod'
2020-12-16T17:34:39,305   adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod'
2020-12-16T17:34:39,306   adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod'
2020-12-16T17:34:39,307   adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod'
2020-12-16T17:34:39,308   adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod'
2020-12-16T17:34:39,309   adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod'
2020-12-16T17:34:39,310   adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod'
2020-12-16T17:34:39,311   adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod'
2020-12-16T17:34:39,313   adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod'
2020-12-16T17:34:39,314   adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod'
2020-12-16T17:34:39,315   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod'
2020-12-16T17:34:39,316   adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod'
2020-12-16T17:34:39,317   adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod'
2020-12-16T17:34:39,318   adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod'
2020-12-16T17:34:39,319   adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod'
2020-12-16T17:34:39,320   adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod'
2020-12-16T17:34:39,321   adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod'
2020-12-16T17:34:39,323   adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod'
2020-12-16T17:34:39,324   adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod'
2020-12-16T17:34:39,325   adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod'
2020-12-16T17:34:39,326   adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod'
2020-12-16T17:34:39,327   adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod'
2020-12-16T17:34:39,329   adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod'
2020-12-16T17:34:39,330   adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod'
2020-12-16T17:34:39,331   adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod'
2020-12-16T17:34:39,332   adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod'
2020-12-16T17:34:39,333   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod'
2020-12-16T17:34:39,334   adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod'
2020-12-16T17:34:39,335   adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod'
2020-12-16T17:34:39,336   adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod'
2020-12-16T17:34:39,338   adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod'
2020-12-16T17:34:39,339   adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod'
2020-12-16T17:34:39,340   adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod'
2020-12-16T17:34:39,341   adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod'
2020-12-16T17:34:39,342   adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod'
2020-12-16T17:34:39,343   adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod'
2020-12-16T17:34:39,345   adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod'
2020-12-16T17:34:39,346   adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod'
2020-12-16T17:34:39,347   adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod'
2020-12-16T17:34:39,348   adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod'
2020-12-16T17:34:39,349   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod'
2020-12-16T17:34:39,350   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod'
2020-12-16T17:34:39,352   adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod'
2020-12-16T17:34:39,353   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod'
2020-12-16T17:34:39,354   adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod'
2020-12-16T17:34:39,355   adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod'
2020-12-16T17:34:39,356   adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod'
2020-12-16T17:34:39,357   adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod'
2020-12-16T17:34:39,359   adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod'
2020-12-16T17:34:39,360   adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod'
2020-12-16T17:34:39,361   adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod'
2020-12-16T17:34:39,362   adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod'
2020-12-16T17:34:39,363   adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod'
2020-12-16T17:34:39,364   adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod'
2020-12-16T17:34:39,366   adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod'
2020-12-16T17:34:39,367   adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod'
2020-12-16T17:34:39,368   adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt'
2020-12-16T17:34:39,369   adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod'
2020-12-16T17:34:39,371   adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod'
2020-12-16T17:34:39,372   adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod'
2020-12-16T17:34:39,373   adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod'
2020-12-16T17:34:39,374   adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod'
2020-12-16T17:34:39,399   adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in'
2020-12-16T17:34:39,403   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt'
2020-12-16T17:34:39,405   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod'
2020-12-16T17:34:39,410   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib'
2020-12-16T17:34:39,412   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in'
2020-12-16T17:34:39,414   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log'
2020-12-16T17:34:39,415   adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15'
2020-12-16T17:34:39,418   adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod'
2020-12-16T17:34:39,419   adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod'
2020-12-16T17:34:39,420   adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod'
2020-12-16T17:34:39,421   adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod'
2020-12-16T17:34:39,422   adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod'
2020-12-16T17:34:39,423   adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod'
2020-12-16T17:34:39,424   adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod'
2020-12-16T17:34:39,425   adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod'
2020-12-16T17:34:39,427   adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod'
2020-12-16T17:34:39,428   adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod'
2020-12-16T17:34:39,429   adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod'
2020-12-16T17:34:39,430   adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod'
2020-12-16T17:34:39,431   adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod'
2020-12-16T17:34:39,433   adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod'
2020-12-16T17:34:39,434   adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod'
2020-12-16T17:34:39,435   adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod'
2020-12-16T17:34:39,436   adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod'
2020-12-16T17:34:39,437   adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod'
2020-12-16T17:34:39,439   adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod'
2020-12-16T17:34:39,440   adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod'
2020-12-16T17:34:39,441   adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod'
2020-12-16T17:34:39,442   adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt'
2020-12-16T17:34:39,444   adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod'
2020-12-16T17:34:39,445   adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod'
2020-12-16T17:34:39,454   adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in'
2020-12-16T17:34:39,472   adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm'
2020-12-16T17:34:39,488   adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm'
2020-12-16T17:34:39,491   adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm'
2020-12-16T17:34:39,507   adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm'
2020-12-16T17:34:39,561   adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm'
2020-12-16T17:34:39,568   adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm'
2020-12-16T17:34:39,576   adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm'
2020-12-16T17:34:39,591   adding 'htmd/share/builder/charmmfiles/par/par_all36_prot.prm'
2020-12-16T17:34:39,607   adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm'
2020-12-16T17:34:39,610   adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm'
2020-12-16T17:34:39,619   adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf'
2020-12-16T17:34:39,630   adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf'
2020-12-16T17:34:39,637   adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf'
2020-12-16T17:34:39,664   adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf'
2020-12-16T17:34:39,830   adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf'
2020-12-16T17:34:39,915   adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf'
2020-12-16T17:34:39,923   adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf'
2020-12-16T17:34:39,933   adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf'
2020-12-16T17:34:39,935   adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf'
2020-12-16T17:34:39,938   adding 'htmd/share/mdengine/acemd/config/equilibration.json'
2020-12-16T17:34:39,939   adding 'htmd/share/mdengine/acemd/config/production.json'
2020-12-16T17:34:39,942   adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb'
2020-12-16T17:34:39,945   adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb'
2020-12-16T17:34:39,948   adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb'
2020-12-16T17:34:39,950   adding 'htmdx/__init__.py'
2020-12-16T17:34:39,951   adding 'htmdx/cli.py'
2020-12-16T17:34:39,953   adding 'htmdx/license.py'
2020-12-16T17:34:39,954   adding 'acellera_htmd-0.dist-info/METADATA'
2020-12-16T17:34:39,955   adding 'acellera_htmd-0.dist-info/WHEEL'
2020-12-16T17:34:39,956   adding 'acellera_htmd-0.dist-info/entry_points.txt'
2020-12-16T17:34:39,957   adding 'acellera_htmd-0.dist-info/top_level.txt'
2020-12-16T17:34:39,960   adding 'acellera_htmd-0.dist-info/RECORD'
2020-12-16T17:34:39,984   removing build/bdist.linux-armv7l/wheel
2020-12-16T17:34:40,162   Building wheel for acellera-htmd (setup.py): finished with status 'done'
2020-12-16T17:34:40,175   Created wheel for acellera-htmd: filename=acellera_htmd-0-py3-none-any.whl size=972074 sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905
2020-12-16T17:34:40,176   Stored in directory: /tmp/pip-ephem-wheel-cache-yj05wvac/wheels/8c/aa/0a/34d540c8aee8b7af365b4c3a9cf3a1382a1f0270639bcb0d01
2020-12-16T17:34:40,178 Successfully built acellera-htmd
2020-12-16T17:34:40,221 Removed build tracker: '/tmp/pip-req-tracker-_8y5gnt8'