2021-01-04T12:55:21,050 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-04T12:55:21,800 Created temporary directory: /tmp/pip-ephem-wheel-cache-p9vq360d 2021-01-04T12:55:21,805 Created temporary directory: /tmp/pip-req-tracker-2fjledh5 2021-01-04T12:55:21,806 Initialized build tracking at /tmp/pip-req-tracker-2fjledh5 2021-01-04T12:55:21,806 Created build tracker: /tmp/pip-req-tracker-2fjledh5 2021-01-04T12:55:21,807 Entered build tracker: /tmp/pip-req-tracker-2fjledh5 2021-01-04T12:55:21,808 Created temporary directory: /tmp/pip-wheel-_vwnsz3_ 2021-01-04T12:55:21,825 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2021-01-04T12:55:21,828 2 location(s) to search for versions of sequana: 2021-01-04T12:55:21,828 * https://pypi.org/simple/sequana/ 2021-01-04T12:55:21,828 * https://pypi.ngc.nvidia.com/sequana/ 2021-01-04T12:55:21,828 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2021-01-04T12:55:21,831 Getting page https://pypi.org/simple/sequana/ 2021-01-04T12:55:21,835 Found index url https://pypi.org/simple 2021-01-04T12:55:22,524 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz#sha256=5a68ea464596221cc2136bd406532e551e024858401306ce220d74f33dc67a25 (from https://pypi.org/simple/sequana/), version: 0.0.2 2021-01-04T12:55:22,525 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz#sha256=a35665981a7dc3bc0f4c616771deff660f200b68ddcf7111ddbf50954783ada6 (from https://pypi.org/simple/sequana/), version: 0.0.3 2021-01-04T12:55:22,526 Found link 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https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 (from https://pypi.org/simple/sequana/), version: 0.9.0 2021-01-04T12:55:22,571 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2021-01-04T12:55:22,572 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2021-01-04T12:55:22,573 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2021-01-04T12:55:22,574 Found link https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 (from https://pypi.org/simple/sequana/), version: 0.9.4 2021-01-04T12:55:22,575 Found link https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff (from https://pypi.org/simple/sequana/), version: 0.9.5 2021-01-04T12:55:22,576 Found link https://files.pythonhosted.org/packages/2f/fc/f32fabca2937e7213b16a9feab8b536a76a67278ee5643ba78d628830457/sequana-0.9.6.tar.gz#sha256=879071711f7e9c0537b7f16614caa92e46c3683db1965070068876b0d1fb389c (from https://pypi.org/simple/sequana/), version: 0.9.6 2021-01-04T12:55:22,577 Found link https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 (from https://pypi.org/simple/sequana/), version: 0.9.7 2021-01-04T12:55:22,578 Found link https://files.pythonhosted.org/packages/02/b0/78c5e898532879ec045c7a10f8482966ae854d9ced08d75fd21679457c59/sequana-0.9.8.tar.gz#sha256=b9117d270539742cfbbd31084e20b38f856a49621a42fdc515e833b16a43787c (from https://pypi.org/simple/sequana/), version: 0.9.8 2021-01-04T12:55:22,578 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/sequana/ 2021-01-04T12:55:22,579 Getting page https://pypi.ngc.nvidia.com/sequana/ 2021-01-04T12:55:22,582 Found index url https://pypi.ngc.nvidia.com 2021-01-04T12:55:23,616 Could not fetch URL https://pypi.ngc.nvidia.com/sequana/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/sequana/ - skipping 2021-01-04T12:55:23,664 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2021-01-04T12:55:23,667 Using version 0.9.8 (newest of versions: 0.9.8) 2021-01-04T12:55:23,676 Collecting sequana==0.9.8 2021-01-04T12:55:23,681 Created temporary directory: /tmp/pip-unpack-ibw4kaec 2021-01-04T12:55:25,007 Downloading sequana-0.9.8.tar.gz (21.0 MB) 2021-01-04T12:55:40,634 Added sequana==0.9.8 from https://files.pythonhosted.org/packages/02/b0/78c5e898532879ec045c7a10f8482966ae854d9ced08d75fd21679457c59/sequana-0.9.8.tar.gz#sha256=b9117d270539742cfbbd31084e20b38f856a49621a42fdc515e833b16a43787c to build tracker '/tmp/pip-req-tracker-2fjledh5' 2021-01-04T12:55:40,637 Running setup.py (path:/tmp/pip-wheel-_vwnsz3_/sequana/setup.py) egg_info for package sequana 2021-01-04T12:55:40,638 Created temporary directory: /tmp/pip-pip-egg-info-tgbvp5fs 2021-01-04T12:55:40,639 Running command python setup.py egg_info 2021-01-04T12:55:43,530 running egg_info 2021-01-04T12:55:43,537 creating /tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info 2021-01-04T12:55:43,542 writing dependency_links to /tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/dependency_links.txt 2021-01-04T12:55:43,544 writing top-level names to /tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/top_level.txt 2021-01-04T12:55:43,546 writing /tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/PKG-INFO 2021-01-04T12:55:43,553 writing requirements to /tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/requires.txt 2021-01-04T12:55:43,558 writing entry points to /tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/entry_points.txt 2021-01-04T12:55:43,562 writing manifest file '/tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/SOURCES.txt' 2021-01-04T12:55:44,720 reading manifest file '/tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/SOURCES.txt' 2021-01-04T12:55:44,723 reading manifest template 'MANIFEST.in' 2021-01-04T12:55:44,731 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-01-04T12:55:44,736 warning: no previously-included files matching '*pyc' found under directory '*' 2021-01-04T12:55:45,489 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-01-04T12:55:45,492 warning: no previously-included files matching '*' found under directory 'test' 2021-01-04T12:55:45,496 warning: no previously-included files found matching 'sequana/rm2.py' 2021-01-04T12:55:45,554 writing manifest file '/tmp/pip-pip-egg-info-tgbvp5fs/sequana.egg-info/SOURCES.txt' 2021-01-04T12:55:45,700 Source in /tmp/pip-wheel-_vwnsz3_/sequana has version 0.9.8, which satisfies requirement sequana==0.9.8 from https://files.pythonhosted.org/packages/02/b0/78c5e898532879ec045c7a10f8482966ae854d9ced08d75fd21679457c59/sequana-0.9.8.tar.gz#sha256=b9117d270539742cfbbd31084e20b38f856a49621a42fdc515e833b16a43787c 2021-01-04T12:55:45,702 Removed sequana==0.9.8 from https://files.pythonhosted.org/packages/02/b0/78c5e898532879ec045c7a10f8482966ae854d9ced08d75fd21679457c59/sequana-0.9.8.tar.gz#sha256=b9117d270539742cfbbd31084e20b38f856a49621a42fdc515e833b16a43787c from build tracker '/tmp/pip-req-tracker-2fjledh5' 2021-01-04T12:55:45,707 Building wheels for collected packages: sequana 2021-01-04T12:55:45,716 Created temporary directory: /tmp/pip-wheel-cql_7sqx 2021-01-04T12:55:45,717 Building wheel for sequana (setup.py): started 2021-01-04T12:55:45,717 Destination directory: /tmp/pip-wheel-cql_7sqx 2021-01-04T12:55:45,718 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_vwnsz3_/sequana/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_vwnsz3_/sequana/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-cql_7sqx 2021-01-04T12:55:48,416 running bdist_wheel 2021-01-04T12:55:48,432 running build 2021-01-04T12:55:48,432 running build_py 2021-01-04T12:55:48,775 creating build 2021-01-04T12:55:48,775 creating build/lib 2021-01-04T12:55:48,777 creating build/lib/sequana 2021-01-04T12:55:48,781 copying sequana/gff3.py -> build/lib/sequana 2021-01-04T12:55:48,788 copying sequana/trf.py -> build/lib/sequana 2021-01-04T12:55:48,793 copying sequana/iotools.py -> build/lib/sequana 2021-01-04T12:55:48,799 copying sequana/kraken_builder.py -> build/lib/sequana 2021-01-04T12:55:48,809 copying sequana/taxonomy.py -> build/lib/sequana 2021-01-04T12:55:48,817 copying sequana/errors.py -> build/lib/sequana 2021-01-04T12:55:48,822 copying sequana/mgi.py -> build/lib/sequana 2021-01-04T12:55:48,828 copying sequana/phred.py -> build/lib/sequana 2021-01-04T12:55:48,834 copying sequana/running_median.py -> build/lib/sequana 2021-01-04T12:55:48,840 copying sequana/adapters.py -> build/lib/sequana 2021-01-04T12:55:48,847 copying sequana/contigs.py -> build/lib/sequana 2021-01-04T12:55:48,851 copying sequana/iem.py -> build/lib/sequana 2021-01-04T12:55:48,856 copying sequana/compare.py -> build/lib/sequana 2021-01-04T12:55:48,864 copying sequana/sniffer.py -> build/lib/sequana 2021-01-04T12:55:48,870 copying sequana/cpg_islands.py -> build/lib/sequana 2021-01-04T12:55:48,875 copying sequana/iuapc.py -> build/lib/sequana 2021-01-04T12:55:48,881 copying sequana/pacbio.py -> build/lib/sequana 2021-01-04T12:55:48,894 copying sequana/fasta.py -> build/lib/sequana 2021-01-04T12:55:48,901 copying sequana/lazy.py -> build/lib/sequana 2021-01-04T12:55:48,907 copying sequana/vcf_filter.py -> build/lib/sequana 2021-01-04T12:55:48,915 copying sequana/cnv.py -> build/lib/sequana 2021-01-04T12:55:48,923 copying sequana/snpeff.py -> build/lib/sequana 2021-01-04T12:55:48,931 copying sequana/demultiplex.py -> build/lib/sequana 2021-01-04T12:55:48,940 copying sequana/stats.py -> build/lib/sequana 2021-01-04T12:55:48,946 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2021-01-04T12:55:48,954 copying sequana/gtf.py -> build/lib/sequana 2021-01-04T12:55:48,959 copying sequana/mh.py -> build/lib/sequana 2021-01-04T12:55:48,966 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2021-01-04T12:55:48,974 copying sequana/kraken.py -> build/lib/sequana 2021-01-04T12:55:48,985 copying sequana/assembly.py -> build/lib/sequana 2021-01-04T12:55:48,989 copying sequana/bamtools.py -> build/lib/sequana 2021-01-04T12:55:48,999 copying sequana/criteria.py -> build/lib/sequana 2021-01-04T12:55:49,005 copying sequana/misc.py -> build/lib/sequana 2021-01-04T12:55:49,011 copying sequana/annotations.py -> build/lib/sequana 2021-01-04T12:55:49,016 copying sequana/vcftools.py -> build/lib/sequana 2021-01-04T12:55:49,022 copying sequana/tools.py -> build/lib/sequana 2021-01-04T12:55:49,030 copying sequana/busco.py -> build/lib/sequana 2021-01-04T12:55:49,036 copying sequana/jsontool.py -> build/lib/sequana 2021-01-04T12:55:49,042 copying sequana/laa.py -> build/lib/sequana 2021-01-04T12:55:49,049 copying sequana/pipelines_common.py -> build/lib/sequana 2021-01-04T12:55:49,059 copying sequana/find_motif.py -> build/lib/sequana 2021-01-04T12:55:49,065 copying sequana/canu_scanner.py -> build/lib/sequana 2021-01-04T12:55:49,071 copying sequana/snaketools.py -> build/lib/sequana 2021-01-04T12:55:49,084 copying sequana/kegg.py -> build/lib/sequana 2021-01-04T12:55:49,096 copying sequana/chipseq.py -> build/lib/sequana 2021-01-04T12:55:49,104 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2021-01-04T12:55:49,112 copying sequana/isoseq.py -> build/lib/sequana 2021-01-04T12:55:49,120 copying sequana/cigar.py -> build/lib/sequana 2021-01-04T12:55:49,127 copying sequana/protein.py -> build/lib/sequana 2021-01-04T12:55:49,133 copying sequana/rnadiff.py -> build/lib/sequana 2021-01-04T12:55:49,144 copying sequana/krona.py -> build/lib/sequana 2021-01-04T12:55:49,151 copying sequana/salmon.py -> build/lib/sequana 2021-01-04T12:55:49,157 copying sequana/bed.py -> build/lib/sequana 2021-01-04T12:55:49,165 copying sequana/enrichment.py -> build/lib/sequana 2021-01-04T12:55:49,177 copying sequana/mixture.py -> build/lib/sequana 2021-01-04T12:55:49,184 copying sequana/kmer.py -> build/lib/sequana 2021-01-04T12:55:49,189 copying sequana/genbank.py -> build/lib/sequana 2021-01-04T12:55:49,196 copying sequana/expdesign.py -> build/lib/sequana 2021-01-04T12:55:49,203 copying sequana/fastqc.py -> build/lib/sequana 2021-01-04T12:55:49,209 copying sequana/__init__.py -> build/lib/sequana 2021-01-04T12:55:49,215 copying sequana/featurecounts.py -> build/lib/sequana 2021-01-04T12:55:49,221 copying sequana/fastq.py -> build/lib/sequana 2021-01-04T12:55:49,232 copying sequana/vst.py -> build/lib/sequana 2021-01-04T12:55:49,239 copying sequana/lazyimports.py -> build/lib/sequana 2021-01-04T12:55:49,246 copying sequana/databases.py -> build/lib/sequana 2021-01-04T12:55:49,255 copying sequana/itol.py -> build/lib/sequana 2021-01-04T12:55:49,262 copying sequana/sequence.py -> build/lib/sequana 2021-01-04T12:55:49,272 copying sequana/summary.py -> build/lib/sequana 2021-01-04T12:55:49,279 copying sequana/datatools.py -> build/lib/sequana 2021-01-04T12:55:49,285 copying sequana/bedtools.py -> build/lib/sequana 2021-01-04T12:55:49,299 copying sequana/coverage.py -> build/lib/sequana 2021-01-04T12:55:49,310 creating build/lib/sequana/multiqc 2021-01-04T12:55:49,313 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,320 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,326 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,332 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,338 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,344 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,349 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,355 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,361 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,366 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,372 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2021-01-04T12:55:49,381 creating build/lib/sequana/resources 2021-01-04T12:55:49,383 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2021-01-04T12:55:49,391 creating build/lib/sequana/scripts 2021-01-04T12:55:49,393 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,398 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,403 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,409 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,414 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,420 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,425 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,432 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,438 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,444 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,450 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,454 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,459 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,465 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2021-01-04T12:55:49,475 creating build/lib/sequana/utils 2021-01-04T12:55:49,478 copying sequana/utils/tree.py -> build/lib/sequana/utils 2021-01-04T12:55:49,485 copying sequana/utils/config.py -> build/lib/sequana/utils 2021-01-04T12:55:49,491 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2021-01-04T12:55:49,494 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2021-01-04T12:55:49,501 creating build/lib/sequana/pipelines 2021-01-04T12:55:49,503 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2021-01-04T12:55:49,508 creating build/lib/sequana/rules 2021-01-04T12:55:49,510 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2021-01-04T12:55:49,515 creating build/lib/sequana/sphinxext 2021-01-04T12:55:49,517 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2021-01-04T12:55:49,522 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2021-01-04T12:55:49,527 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2021-01-04T12:55:49,535 creating build/lib/sequana/modules_report 2021-01-04T12:55:49,537 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,546 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,551 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,558 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,563 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,567 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,573 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,580 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,586 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,593 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,598 copying sequana/modules_report/enrichment.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,604 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,608 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,612 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,618 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,626 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,632 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,638 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2021-01-04T12:55:49,652 creating build/lib/sequana/viz 2021-01-04T12:55:49,654 copying sequana/viz/pca.py -> build/lib/sequana/viz 2021-01-04T12:55:49,660 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2021-01-04T12:55:49,665 copying sequana/viz/anova.py -> build/lib/sequana/viz 2021-01-04T12:55:49,669 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2021-01-04T12:55:49,676 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2021-01-04T12:55:49,682 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2021-01-04T12:55:49,688 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2021-01-04T12:55:49,694 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2021-01-04T12:55:49,701 copying sequana/viz/venn.py -> build/lib/sequana/viz 2021-01-04T12:55:49,707 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2021-01-04T12:55:49,716 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2021-01-04T12:55:49,722 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2021-01-04T12:55:49,729 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2021-01-04T12:55:49,737 copying sequana/viz/core.py -> build/lib/sequana/viz 2021-01-04T12:55:49,743 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2021-01-04T12:55:49,749 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2021-01-04T12:55:49,755 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2021-01-04T12:55:49,761 copying sequana/viz/mds.py -> build/lib/sequana/viz 2021-01-04T12:55:49,772 creating build/lib/sequana/gui 2021-01-04T12:55:49,775 copying sequana/gui/browser.py -> build/lib/sequana/gui 2021-01-04T12:55:49,781 copying sequana/gui/about.py -> build/lib/sequana/gui 2021-01-04T12:55:49,786 copying sequana/gui/help.py -> build/lib/sequana/gui 2021-01-04T12:55:49,790 copying sequana/gui/messages.py -> build/lib/sequana/gui 2021-01-04T12:55:49,797 copying sequana/gui/tools.py -> build/lib/sequana/gui 2021-01-04T12:55:49,804 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2021-01-04T12:55:49,809 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2021-01-04T12:55:49,817 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2021-01-04T12:55:49,823 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2021-01-04T12:55:49,835 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2021-01-04T12:55:49,842 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2021-01-04T12:55:49,850 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2021-01-04T12:55:49,864 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2021-01-04T12:55:49,869 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2021-01-04T12:55:49,876 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2021-01-04T12:55:49,883 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2021-01-04T12:55:49,891 creating build/lib/sequana/plots 2021-01-04T12:55:49,894 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2021-01-04T12:55:49,901 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2021-01-04T12:55:49,908 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2021-01-04T12:55:49,915 creating build/lib/sequana/resources/busco 2021-01-04T12:55:49,917 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2021-01-04T12:55:49,925 creating build/lib/sequana/resources/js 2021-01-04T12:55:49,928 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2021-01-04T12:55:49,935 creating build/lib/sequana/resources/canvas 2021-01-04T12:55:49,937 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2021-01-04T12:55:49,942 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2021-01-04T12:55:49,947 creating build/lib/sequana/resources/snpeff 2021-01-04T12:55:49,949 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2021-01-04T12:55:49,954 creating build/lib/sequana/resources/css 2021-01-04T12:55:49,956 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2021-01-04T12:55:49,963 creating build/lib/sequana/resources/templates 2021-01-04T12:55:49,966 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2021-01-04T12:55:49,973 creating build/lib/sequana/resources/data 2021-01-04T12:55:49,976 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2021-01-04T12:55:49,983 creating build/lib/sequana/resources/testing 2021-01-04T12:55:49,985 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2021-01-04T12:55:49,990 creating build/lib/sequana/resources/images 2021-01-04T12:55:49,992 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2021-01-04T12:55:49,998 creating build/lib/sequana/resources/data/adapters 2021-01-04T12:55:50,000 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:50,007 creating build/lib/sequana/resources/testing/rnadiff 2021-01-04T12:55:50,009 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2021-01-04T12:55:50,016 creating build/lib/sequana/rules/Pacbio 2021-01-04T12:55:50,018 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2021-01-04T12:55:50,024 creating build/lib/sequana/rules/deeptools 2021-01-04T12:55:50,025 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2021-01-04T12:55:50,031 creating build/lib/sequana/rules/sambamba 2021-01-04T12:55:50,032 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2021-01-04T12:55:50,037 creating build/lib/sequana/rules/Utils 2021-01-04T12:55:50,040 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2021-01-04T12:55:50,047 creating build/lib/sequana/rules/picard-tools 2021-01-04T12:55:50,049 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2021-01-04T12:55:50,057 creating build/lib/sequana/rules/idr 2021-01-04T12:55:50,059 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2021-01-04T12:55:50,064 creating build/lib/sequana/rules/codecs 2021-01-04T12:55:50,066 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2021-01-04T12:55:50,070 creating build/lib/sequana/rules/Variant_caller 2021-01-04T12:55:50,072 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2021-01-04T12:55:50,077 creating build/lib/sequana/rules/Adapters 2021-01-04T12:55:50,079 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2021-01-04T12:55:50,085 creating build/lib/sequana/rules/Assembly 2021-01-04T12:55:50,088 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2021-01-04T12:55:50,094 creating build/lib/sequana/rules/SnpEff 2021-01-04T12:55:50,097 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2021-01-04T12:55:50,835 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2021-01-04T12:55:50,841 creating build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,843 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,848 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,853 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,858 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,864 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,871 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,877 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2021-01-04T12:55:50,886 copying sequana/rules/README.rst -> build/lib/sequana/rules 2021-01-04T12:55:50,893 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-01-04T12:55:50,895 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-01-04T12:55:50,902 creating build/lib/sequana/rules/chipuanar 2021-01-04T12:55:50,905 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2021-01-04T12:55:50,911 creating build/lib/sequana/rules/fastq_screen 2021-01-04T12:55:50,913 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2021-01-04T12:55:50,918 creating build/lib/sequana/rules/macs3_dynamic 2021-01-04T12:55:50,920 copying sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/lib/sequana/rules/macs3_dynamic 2021-01-04T12:55:50,925 creating build/lib/sequana/rules/multiqc 2021-01-04T12:55:50,928 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2021-01-04T12:55:50,935 creating build/lib/sequana/rules/pacbio_quality 2021-01-04T12:55:50,937 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2021-01-04T12:55:50,945 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-01-04T12:55:50,947 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-01-04T12:55:50,952 creating build/lib/sequana/rules/bwa_mem_dynamic 2021-01-04T12:55:50,954 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2021-01-04T12:55:50,960 creating build/lib/sequana/rules/fastq_stats_dynamic 2021-01-04T12:55:50,962 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2021-01-04T12:55:50,967 creating build/lib/sequana/rules/fastqc_dynamic 2021-01-04T12:55:50,970 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2021-01-04T12:55:50,977 creating build/lib/sequana/rules/bwa_index 2021-01-04T12:55:50,979 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2021-01-04T12:55:50,986 creating build/lib/sequana/rules/extract_fasta_from_bed 2021-01-04T12:55:50,988 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2021-01-04T12:55:50,994 creating build/lib/sequana/rules/mapping_analysis 2021-01-04T12:55:50,996 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2021-01-04T12:55:51,001 creating build/lib/sequana/rules/fastq_screen_report 2021-01-04T12:55:51,003 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2021-01-04T12:55:51,009 creating build/lib/sequana/rules/rnaseqc 2021-01-04T12:55:51,011 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2021-01-04T12:55:51,018 creating build/lib/sequana/rules/spp 2021-01-04T12:55:51,021 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2021-01-04T12:55:51,028 creating build/lib/sequana/rules/prokka 2021-01-04T12:55:51,030 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2021-01-04T12:55:51,035 creating build/lib/sequana/rules/salmon_mapping 2021-01-04T12:55:51,037 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2021-01-04T12:55:51,042 creating build/lib/sequana/rules/rulegraph 2021-01-04T12:55:51,044 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2021-01-04T12:55:51,050 creating build/lib/sequana/rules/digital_normalisation 2021-01-04T12:55:51,053 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2021-01-04T12:55:51,060 creating build/lib/sequana/rules/bowtie2_index_dynamic 2021-01-04T12:55:51,062 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2021-01-04T12:55:51,069 creating build/lib/sequana/rules/dag 2021-01-04T12:55:51,071 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2021-01-04T12:55:51,076 creating build/lib/sequana/rules/summary_pipeline 2021-01-04T12:55:51,078 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2021-01-04T12:55:51,084 creating build/lib/sequana/rules/salmon_index 2021-01-04T12:55:51,085 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2021-01-04T12:55:51,091 creating build/lib/sequana/rules/format_contigs 2021-01-04T12:55:51,094 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2021-01-04T12:55:51,101 creating build/lib/sequana/rules/falco_dynamic 2021-01-04T12:55:51,103 copying sequana/rules/falco_dynamic/falco_dynamic.rules -> build/lib/sequana/rules/falco_dynamic 2021-01-04T12:55:51,110 creating build/lib/sequana/rules/DupRadar 2021-01-04T12:55:51,112 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2021-01-04T12:55:51,117 creating build/lib/sequana/rules/conda 2021-01-04T12:55:51,119 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2021-01-04T12:55:51,124 creating build/lib/sequana/rules/miRNA_count_dynamic 2021-01-04T12:55:51,126 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2021-01-04T12:55:51,132 creating build/lib/sequana/rules/bam_quality_filter 2021-01-04T12:55:51,134 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2021-01-04T12:55:51,142 creating build/lib/sequana/rules/bed_to_gff 2021-01-04T12:55:51,144 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2021-01-04T12:55:51,153 creating build/lib/sequana/rules/samtools_depth 2021-01-04T12:55:51,156 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2021-01-04T12:55:51,164 creating build/lib/sequana/rules/feature_counts 2021-01-04T12:55:51,167 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2021-01-04T12:55:51,174 creating build/lib/sequana/rules/fastq_sampling 2021-01-04T12:55:51,177 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2021-01-04T12:55:51,185 creating build/lib/sequana/rules/SARTools 2021-01-04T12:55:51,187 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2021-01-04T12:55:51,196 creating build/lib/sequana/rules/igvtools 2021-01-04T12:55:51,198 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2021-01-04T12:55:51,207 creating build/lib/sequana/rules/preSARTools 2021-01-04T12:55:51,209 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2021-01-04T12:55:51,218 creating build/lib/sequana/rules/multiqc2 2021-01-04T12:55:51,221 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2021-01-04T12:55:51,228 creating build/lib/sequana/rules/copy_multiple_files 2021-01-04T12:55:51,231 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2021-01-04T12:55:51,239 creating build/lib/sequana/rules/sequana_coverage 2021-01-04T12:55:51,241 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2021-01-04T12:55:51,250 creating build/lib/sequana/rules/bowtie1_index_dynamic 2021-01-04T12:55:51,253 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2021-01-04T12:55:51,260 creating build/lib/sequana/rules/star_index 2021-01-04T12:55:51,263 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2021-01-04T12:55:51,271 creating build/lib/sequana/rules/tophat_mapping 2021-01-04T12:55:51,274 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2021-01-04T12:55:51,282 creating build/lib/sequana/rules/quast 2021-01-04T12:55:51,284 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2021-01-04T12:55:51,293 creating build/lib/sequana/rules/spikes_counting 2021-01-04T12:55:51,296 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2021-01-04T12:55:51,306 creating build/lib/sequana/rules/bam_analysis 2021-01-04T12:55:51,308 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2021-01-04T12:55:51,317 creating build/lib/sequana/rules/star_mapping 2021-01-04T12:55:51,319 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2021-01-04T12:55:51,328 creating build/lib/sequana/rules/remove_blacklist 2021-01-04T12:55:51,330 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2021-01-04T12:55:51,337 creating build/lib/sequana/rules/indel_realigner 2021-01-04T12:55:51,340 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2021-01-04T12:55:51,347 creating build/lib/sequana/rules/bwa_bam_to_fastq 2021-01-04T12:55:51,350 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2021-01-04T12:55:51,356 creating build/lib/sequana/rules/feature_counts_dynamic 2021-01-04T12:55:51,358 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2021-01-04T12:55:51,364 creating build/lib/sequana/rules/samtools_sort 2021-01-04T12:55:51,366 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2021-01-04T12:55:51,371 creating build/lib/sequana/rules/revcomp_rule 2021-01-04T12:55:51,373 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2021-01-04T12:55:51,380 creating build/lib/sequana/rules/multiqc/2.0 2021-01-04T12:55:51,383 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2021-01-04T12:55:51,390 creating build/lib/sequana/rules/peak_calling 2021-01-04T12:55:51,391 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-01-04T12:55:51,394 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-01-04T12:55:51,401 creating build/lib/sequana/rules/kraken 2021-01-04T12:55:51,402 creating build/lib/sequana/rules/kraken/1.1 2021-01-04T12:55:51,405 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2021-01-04T12:55:51,412 creating build/lib/sequana/rules/kraken/1.0 2021-01-04T12:55:51,415 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2021-01-04T12:55:51,423 creating build/lib/sequana/rules/deeptools/multiBamSummary 2021-01-04T12:55:51,426 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2021-01-04T12:55:51,435 creating build/lib/sequana/rules/deeptools/plotCorrelation 2021-01-04T12:55:51,438 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2021-01-04T12:55:51,446 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-01-04T12:55:51,450 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-01-04T12:55:51,456 creating build/lib/sequana/rules/deeptools/bamCoverage 2021-01-04T12:55:51,458 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2021-01-04T12:55:51,464 creating build/lib/sequana/rules/deeptools/plotCoverage 2021-01-04T12:55:51,466 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2021-01-04T12:55:51,472 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2021-01-04T12:55:51,474 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2021-01-04T12:55:51,482 creating build/lib/sequana/rules/sambamba/sambamba_filter 2021-01-04T12:55:51,485 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2021-01-04T12:55:51,493 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-01-04T12:55:51,496 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-01-04T12:55:51,504 creating build/lib/sequana/rules/Utils/dynamic_copy 2021-01-04T12:55:51,506 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2021-01-04T12:55:51,514 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2021-01-04T12:55:51,516 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2021-01-04T12:55:51,524 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-01-04T12:55:51,528 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-01-04T12:55:51,537 creating build/lib/sequana/rules/picard-tools/reorderSam 2021-01-04T12:55:51,540 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2021-01-04T12:55:51,547 creating build/lib/sequana/rules/picard-tools/add_read_group 2021-01-04T12:55:51,550 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2021-01-04T12:55:51,556 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-01-04T12:55:51,559 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-01-04T12:55:51,565 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-01-04T12:55:51,572 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-01-04T12:55:51,579 creating build/lib/sequana/rules/idr/compute_idr 2021-01-04T12:55:51,583 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2021-01-04T12:55:51,593 creating build/lib/sequana/rules/idr/select_peaks 2021-01-04T12:55:51,597 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2021-01-04T12:55:51,604 creating build/lib/sequana/rules/idr/metrics_peaks 2021-01-04T12:55:51,607 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2021-01-04T12:55:51,614 creating build/lib/sequana/rules/idr/intersectionApproach 2021-01-04T12:55:51,617 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2021-01-04T12:55:51,626 creating build/lib/sequana/rules/idr/union_peaks 2021-01-04T12:55:51,630 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2021-01-04T12:55:51,639 creating build/lib/sequana/rules/idr/stats_peakCalling 2021-01-04T12:55:51,642 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2021-01-04T12:55:51,649 creating build/lib/sequana/rules/idr/preIDR_dynamic 2021-01-04T12:55:51,652 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2021-01-04T12:55:51,660 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2021-01-04T12:55:51,665 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2021-01-04T12:55:51,674 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-01-04T12:55:51,678 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-01-04T12:55:51,686 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-01-04T12:55:51,688 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-01-04T12:55:51,694 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-01-04T12:55:51,696 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-01-04T12:55:51,702 creating build/lib/sequana/rules/codecs/gz_to_fastq 2021-01-04T12:55:51,704 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2021-01-04T12:55:51,711 creating build/lib/sequana/rules/codecs/bz2_to_gz 2021-01-04T12:55:51,714 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2021-01-04T12:55:51,721 creating build/lib/sequana/rules/codecs/bam_to_fasta 2021-01-04T12:55:51,723 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2021-01-04T12:55:51,728 creating build/lib/sequana/rules/codecs/gz_to_bz2 2021-01-04T12:55:51,730 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2021-01-04T12:55:51,736 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2021-01-04T12:55:51,738 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2021-01-04T12:55:51,744 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-01-04T12:55:51,747 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-01-04T12:55:51,754 creating build/lib/sequana/rules/codecs/fastq_to_gz 2021-01-04T12:55:51,756 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2021-01-04T12:55:51,763 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2021-01-04T12:55:51,765 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2021-01-04T12:55:51,770 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2021-01-04T12:55:51,772 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2021-01-04T12:55:51,777 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-01-04T12:55:51,779 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-01-04T12:55:51,787 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-01-04T12:55:51,790 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-01-04T12:55:51,797 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-01-04T12:55:51,800 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-01-04T12:55:51,805 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-01-04T12:55:51,807 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-01-04T12:55:51,814 creating build/lib/sequana/rules/Variant_caller/freebayes 2021-01-04T12:55:51,816 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2021-01-04T12:55:51,821 creating build/lib/sequana/rules/Adapters/adapter_removal 2021-01-04T12:55:51,824 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2021-01-04T12:55:51,831 creating build/lib/sequana/rules/Adapters/alien_trimmer 2021-01-04T12:55:51,833 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2021-01-04T12:55:51,841 creating build/lib/sequana/rules/Adapters/identify_adapters 2021-01-04T12:55:51,843 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2021-01-04T12:55:51,848 creating build/lib/sequana/rules/Adapters/cutadapt 2021-01-04T12:55:51,850 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2021-01-04T12:55:51,856 creating build/lib/sequana/rules/Assembly/busco 2021-01-04T12:55:51,858 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2021-01-04T12:55:51,865 creating build/lib/sequana/rules/Assembly/busco_analysis 2021-01-04T12:55:51,867 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2021-01-04T12:55:51,875 creating build/lib/sequana/rules/Assembly/canu 2021-01-04T12:55:51,877 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2021-01-04T12:55:51,884 creating build/lib/sequana/rules/Assembly/spades 2021-01-04T12:55:51,887 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2021-01-04T12:55:51,893 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2021-01-04T12:55:51,895 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2021-01-04T12:55:51,900 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-01-04T12:55:51,902 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-01-04T12:55:51,909 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-01-04T12:55:51,912 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-01-04T12:55:51,919 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-01-04T12:55:51,920 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-01-04T12:55:51,924 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-01-04T12:55:51,930 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-01-04T12:55:51,932 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-01-04T12:55:51,937 creating build/lib/sequana/rules/SnpEff/snpeff 2021-01-04T12:55:51,938 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-01-04T12:55:51,941 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-01-04T12:55:51,948 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-01-04T12:55:51,952 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-01-04T12:55:51,962 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2021-01-04T12:55:51,969 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:51,983 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:51,992 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,002 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,010 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,026 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,038 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,070 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,079 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,095 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,111 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,142 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,148 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2021-01-04T12:55:52,158 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2021-01-04T12:55:52,167 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2021-01-04T12:55:52,176 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2021-01-04T12:55:52,184 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2021-01-04T12:55:52,204 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2021-01-04T12:55:52,213 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2021-01-04T12:55:52,222 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2021-01-04T12:55:52,230 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2021-01-04T12:55:52,238 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2021-01-04T12:55:52,245 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2021-01-04T12:55:52,252 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2021-01-04T12:55:52,258 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2021-01-04T12:55:52,266 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2021-01-04T12:55:52,282 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2021-01-04T12:55:52,291 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2021-01-04T12:55:52,304 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2021-01-04T12:55:52,360 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-01-04T12:55:52,380 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2021-01-04T12:55:52,387 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2021-01-04T12:55:52,396 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-01-04T12:55:52,856 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2021-01-04T12:55:52,913 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-01-04T12:55:53,364 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2021-01-04T12:55:53,451 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2021-01-04T12:55:53,460 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2021-01-04T12:55:53,480 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2021-01-04T12:55:53,487 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-01-04T12:55:53,506 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2021-01-04T12:55:53,542 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-01-04T12:55:53,561 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2021-01-04T12:55:53,568 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2021-01-04T12:55:53,575 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2021-01-04T12:55:53,618 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2021-01-04T12:55:53,628 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2021-01-04T12:55:53,638 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2021-01-04T12:55:53,653 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2021-01-04T12:55:53,663 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2021-01-04T12:55:53,670 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2021-01-04T12:55:53,677 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2021-01-04T12:55:53,688 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2021-01-04T12:55:53,698 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2021-01-04T12:55:53,726 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2021-01-04T12:55:53,734 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2021-01-04T12:55:53,741 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2021-01-04T12:55:53,749 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,757 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,766 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,773 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,780 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,787 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,795 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,802 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,809 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,841 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,861 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,868 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,876 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,883 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,892 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,900 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,908 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,916 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,924 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,932 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,942 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,952 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,960 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:53,967 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,010 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,019 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,028 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,040 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,046 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,053 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,071 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,078 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,085 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,100 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,121 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,128 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,141 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,147 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,152 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,159 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,166 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,183 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,189 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,199 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,206 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,213 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,220 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,237 copying sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,243 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,250 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,262 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,267 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,272 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,277 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,284 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,299 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,306 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,311 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,316 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,323 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,331 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,342 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,347 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,354 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,395 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,404 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,413 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,427 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,434 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,439 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,447 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,454 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,494 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,500 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,508 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,515 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,523 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,528 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,542 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,552 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,560 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,568 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,573 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,586 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,628 copying sequana/resources/testing/test.bam.bai -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,635 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,659 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,665 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,671 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,741 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,752 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,758 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,765 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,773 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,780 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,786 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,792 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2021-01-04T12:55:54,799 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2021-01-04T12:55:54,806 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2021-01-04T12:55:54,813 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2021-01-04T12:55:54,824 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,830 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,837 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,845 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,853 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,859 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,865 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,870 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,876 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,884 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,893 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,899 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,904 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,910 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,918 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,925 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,932 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,938 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,943 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,949 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,956 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,964 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,971 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,977 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,983 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,988 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:54,995 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:55,002 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:55,009 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:55,017 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:55,025 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2021-01-04T12:55:55,034 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2021-01-04T12:55:55,035 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-01-04T12:55:55,038 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-01-04T12:55:55,046 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-01-04T12:55:55,054 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2021-01-04T12:55:55,055 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-01-04T12:55:55,058 copying sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-01-04T12:55:55,141 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2021-01-04T12:55:55,142 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-01-04T12:55:55,146 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-01-04T12:55:56,816 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-01-04T12:55:57,379 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-01-04T12:55:57,380 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-01-04T12:55:57,384 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-01-04T12:55:57,559 installing to build/bdist.linux-armv7l/wheel 2021-01-04T12:55:57,560 running install 2021-01-04T12:55:57,562 running install_lib 2021-01-04T12:55:57,570 creating build/bdist.linux-armv7l 2021-01-04T12:55:57,571 creating build/bdist.linux-armv7l/wheel 2021-01-04T12:55:57,578 creating build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,580 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,587 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,592 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,597 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,605 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,613 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,619 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,624 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,630 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,637 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,639 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,647 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,655 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,665 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,673 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,679 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,687 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,693 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,698 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,704 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,711 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,718 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-01-04T12:55:57,726 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,734 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,739 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,745 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,753 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,759 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,764 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,769 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,778 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,785 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,791 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,799 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,806 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:55:57,814 creating build/bdist.linux-armv7l/wheel/sequana/resources 2021-01-04T12:55:57,818 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-01-04T12:55:57,822 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-01-04T12:55:57,829 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-01-04T12:55:57,836 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,839 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,856 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,864 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,876 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,885 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,898 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,908 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,938 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,945 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,951 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,967 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:57,980 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:58,008 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:58,014 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-01-04T12:55:58,024 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-01-04T12:55:58,027 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-01-04T12:55:58,033 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-01-04T12:55:58,038 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-01-04T12:55:58,040 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-01-04T12:55:58,047 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-01-04T12:55:58,054 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-01-04T12:55:58,056 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-01-04T12:55:58,064 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-01-04T12:55:58,070 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-01-04T12:55:58,086 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-01-04T12:55:58,093 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-01-04T12:55:58,098 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-01-04T12:55:58,106 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-01-04T12:55:58,109 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-01-04T12:55:58,116 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-01-04T12:55:58,122 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-01-04T12:55:58,128 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-01-04T12:55:58,132 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-01-04T12:55:58,143 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,146 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,157 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,212 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,220 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,239 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,245 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,252 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,708 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:58,758 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,208 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,290 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,298 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,310 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,328 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,334 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,353 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,388 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,405 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,412 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,418 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,460 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,469 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,475 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,484 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,495 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,501 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,509 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,514 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,522 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,529 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,540 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,549 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,577 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,584 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,589 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-01-04T12:55:59,599 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,601 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,608 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,615 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,621 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,628 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,634 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,640 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,645 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,652 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,659 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,665 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,673 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,680 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,687 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,693 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,699 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,705 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,713 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,721 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,729 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,736 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,743 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,751 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,757 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,765 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,772 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,777 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,783 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,789 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,796 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,803 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,809 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-01-04T12:55:59,826 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,829 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,860 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,880 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,886 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,894 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,900 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,905 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,911 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,915 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,920 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,924 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,930 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,937 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,943 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,950 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,956 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,962 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,967 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:55:59,973 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,014 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,022 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,027 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,038 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,043 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,050 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,063 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,067 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,072 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,087 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,109 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,115 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,127 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,135 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,141 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,146 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,153 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:00,161 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-01-04T12:56:00,166 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2021-01-04T12:56:00,171 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-01-04T12:56:00,174 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-01-04T12:56:00,184 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-01-04T12:56:00,195 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2021-01-04T12:56:00,199 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-01-04T12:56:00,203 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-01-04T12:56:00,286 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2021-01-04T12:56:00,291 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-01-04T12:56:00,294 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-01-04T12:56:01,974 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-01-04T12:56:02,539 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-01-04T12:56:02,549 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-01-04T12:56:02,553 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-01-04T12:56:02,557 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-01-04T12:56:02,652 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,670 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,677 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,687 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,692 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,698 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,703 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,720 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,724 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,729 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,739 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,745 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,749 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,754 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,760 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,772 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,778 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,783 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,789 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,794 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,800 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,807 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,815 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,821 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,828 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,869 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,877 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,885 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,890 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,895 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,908 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,913 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,918 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,923 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,930 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,936 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,972 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,977 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,982 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,987 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,992 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:02,998 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,003 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,016 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,025 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,031 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,039 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,043 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,054 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,094 copying build/lib/sequana/resources/testing/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,100 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,122 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,126 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,130 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,196 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,204 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,208 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,214 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,222 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,229 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,234 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,238 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-01-04T12:56:03,242 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2021-01-04T12:56:03,248 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-01-04T12:56:03,250 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-01-04T12:56:03,256 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-01-04T12:56:03,263 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-01-04T12:56:03,273 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-01-04T12:56:03,278 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,285 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,290 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,298 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,306 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,309 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,313 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,319 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,324 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,330 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,336 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,343 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,350 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,354 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,359 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,364 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,367 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,372 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,380 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-01-04T12:56:03,387 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,393 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,398 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,409 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,415 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,427 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,433 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,438 copying build/lib/sequana/annotations.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,444 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,450 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,458 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,465 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,470 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,477 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,487 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,493 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,500 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,513 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,524 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,535 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,543 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,552 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,560 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,566 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,580 creating build/bdist.linux-armv7l/wheel/sequana/utils 2021-01-04T12:56:03,584 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-01-04T12:56:03,592 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-01-04T12:56:03,603 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-01-04T12:56:03,609 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-01-04T12:56:03,618 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,625 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-01-04T12:56:03,628 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,630 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,635 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,639 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,644 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,650 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,656 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,661 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-01-04T12:56:03,667 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-01-04T12:56:03,671 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,676 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,682 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:03,698 creating build/bdist.linux-armv7l/wheel/sequana/rules 2021-01-04T12:56:03,702 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-01-04T12:56:03,704 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-01-04T12:56:03,710 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-01-04T12:56:03,712 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-01-04T12:56:03,718 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-01-04T12:56:03,720 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-01-04T12:56:03,728 creating build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-01-04T12:56:03,731 copying build/lib/sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-01-04T12:56:03,739 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-01-04T12:56:03,743 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-01-04T12:56:03,745 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-01-04T12:56:03,750 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-01-04T12:56:03,755 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-01-04T12:56:03,757 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-01-04T12:56:03,764 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-01-04T12:56:03,767 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-01-04T12:56:03,775 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-01-04T12:56:03,777 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-01-04T12:56:03,785 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-01-04T12:56:03,787 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-01-04T12:56:03,792 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2021-01-04T12:56:03,795 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-01-04T12:56:03,797 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-01-04T12:56:03,803 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-01-04T12:56:03,806 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-01-04T12:56:03,814 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-01-04T12:56:03,817 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-01-04T12:56:03,824 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-01-04T12:56:03,826 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-01-04T12:56:03,832 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2021-01-04T12:56:03,835 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-01-04T12:56:03,837 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-01-04T12:56:03,843 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-01-04T12:56:03,846 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-01-04T12:56:03,853 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-01-04T12:56:03,856 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-01-04T12:56:03,864 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-01-04T12:56:03,867 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-01-04T12:56:03,869 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-01-04T12:56:03,875 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-01-04T12:56:03,877 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-01-04T12:56:03,882 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-01-04T12:56:03,884 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-01-04T12:56:03,890 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2021-01-04T12:56:03,892 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2021-01-04T12:56:03,896 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-01-04T12:56:03,901 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-01-04T12:56:03,903 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-01-04T12:56:03,910 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-01-04T12:56:03,913 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-01-04T12:56:03,921 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-01-04T12:56:03,925 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-01-04T12:56:03,927 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-01-04T12:56:03,932 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-01-04T12:56:03,936 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-01-04T12:56:03,938 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-01-04T12:56:03,944 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-01-04T12:56:03,947 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-01-04T12:56:03,949 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-01-04T12:56:03,955 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-01-04T12:56:03,957 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-01-04T12:56:03,963 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-01-04T12:56:03,965 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-01-04T12:56:03,971 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-01-04T12:56:03,977 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-01-04T12:56:03,979 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-01-04T12:56:03,987 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-01-04T12:56:03,989 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-01-04T12:56:03,995 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-01-04T12:56:03,997 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-01-04T12:56:04,002 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-01-04T12:56:04,004 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-01-04T12:56:04,012 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-01-04T12:56:04,016 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-01-04T12:56:04,019 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-01-04T12:56:04,027 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-01-04T12:56:04,028 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-01-04T12:56:04,034 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-01-04T12:56:04,036 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-01-04T12:56:04,040 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-01-04T12:56:04,045 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-01-04T12:56:04,047 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-01-04T12:56:04,053 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-01-04T12:56:04,054 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-01-04T12:56:04,060 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-01-04T12:56:04,062 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-01-04T12:56:04,068 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-01-04T12:56:04,071 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-01-04T12:56:04,078 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-01-04T12:56:04,081 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-01-04T12:56:04,089 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-01-04T12:56:04,092 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-01-04T12:56:04,100 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-01-04T12:56:04,102 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-01-04T12:56:04,110 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-01-04T12:56:04,112 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-01-04T12:56:04,117 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-01-04T12:56:04,119 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-01-04T12:56:04,125 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-01-04T12:56:04,126 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-01-04T12:56:04,133 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2021-01-04T12:56:04,136 copying build/lib/sequana/rules/falco_dynamic/falco_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2021-01-04T12:56:04,144 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-01-04T12:56:04,146 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-01-04T12:56:04,153 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-01-04T12:56:04,156 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-01-04T12:56:04,159 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-01-04T12:56:04,165 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-01-04T12:56:04,166 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-01-04T12:56:04,173 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-01-04T12:56:04,175 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-01-04T12:56:04,183 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-01-04T12:56:04,185 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-01-04T12:56:04,192 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-01-04T12:56:04,194 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-01-04T12:56:04,199 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-01-04T12:56:04,203 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-01-04T12:56:04,205 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-01-04T12:56:04,211 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-01-04T12:56:04,214 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-01-04T12:56:04,223 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-01-04T12:56:04,225 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-01-04T12:56:04,233 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-01-04T12:56:04,235 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-01-04T12:56:04,243 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-01-04T12:56:04,246 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-01-04T12:56:04,254 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-01-04T12:56:04,258 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-01-04T12:56:04,261 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-01-04T12:56:04,269 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-01-04T12:56:04,271 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-01-04T12:56:04,278 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-01-04T12:56:04,280 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-01-04T12:56:04,286 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-01-04T12:56:04,288 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-01-04T12:56:04,294 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-01-04T12:56:04,297 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-01-04T12:56:04,304 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-01-04T12:56:04,307 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-01-04T12:56:04,315 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-01-04T12:56:04,317 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-01-04T12:56:04,325 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-01-04T12:56:04,328 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-01-04T12:56:04,336 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-01-04T12:56:04,338 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-01-04T12:56:04,346 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-01-04T12:56:04,349 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-01-04T12:56:04,357 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-01-04T12:56:04,359 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-01-04T12:56:04,366 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-01-04T12:56:04,372 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-01-04T12:56:04,375 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-01-04T12:56:04,383 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-01-04T12:56:04,385 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-01-04T12:56:04,393 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-01-04T12:56:04,396 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-01-04T12:56:04,404 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-01-04T12:56:04,408 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-01-04T12:56:04,411 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-01-04T12:56:04,419 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-01-04T12:56:04,421 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-01-04T12:56:04,429 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-01-04T12:56:04,431 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-01-04T12:56:04,437 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-01-04T12:56:04,442 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-01-04T12:56:04,444 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-01-04T12:56:04,450 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-01-04T12:56:04,451 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-01-04T12:56:04,458 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-01-04T12:56:04,460 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-01-04T12:56:04,468 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-01-04T12:56:04,470 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-01-04T12:56:04,478 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-01-04T12:56:04,481 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-01-04T12:56:04,488 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-01-04T12:56:04,491 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-01-04T12:56:04,500 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-01-04T12:56:04,502 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-01-04T12:56:04,508 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-01-04T12:56:04,514 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-01-04T12:56:04,520 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-01-04T12:56:04,522 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-01-04T12:56:04,530 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-01-04T12:56:04,534 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-01-04T12:56:04,537 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-01-04T12:56:04,545 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-01-04T12:56:04,548 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-01-04T12:56:04,555 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-01-04T12:56:04,558 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-01-04T12:56:04,566 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-01-04T12:56:04,568 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-01-04T12:56:04,576 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-01-04T12:56:04,582 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-01-04T12:56:04,584 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-01-04T12:56:04,592 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-01-04T12:56:04,594 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-01-04T12:56:04,602 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-01-04T12:56:04,605 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-01-04T12:56:04,613 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-01-04T12:56:04,615 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-01-04T12:56:04,623 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-01-04T12:56:04,627 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-01-04T12:56:04,630 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-01-04T12:56:04,638 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-01-04T12:56:04,640 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-01-04T12:56:04,646 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-01-04T12:56:04,648 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-01-04T12:56:04,654 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-01-04T12:56:04,655 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-01-04T12:56:04,660 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-01-04T12:56:04,666 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-01-04T12:56:04,669 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-01-04T12:56:04,677 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-01-04T12:56:04,679 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-01-04T12:56:04,686 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-01-04T12:56:04,687 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-01-04T12:56:04,693 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-01-04T12:56:04,696 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-01-04T12:56:04,700 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-01-04T12:56:04,703 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-01-04T12:56:04,711 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-01-04T12:56:04,713 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-01-04T12:56:04,721 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-01-04T12:56:04,724 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-01-04T12:56:04,732 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2021-01-04T12:56:04,736 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-01-04T12:56:04,739 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-01-04T12:56:04,747 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-01-04T12:56:04,750 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-01-04T12:56:04,756 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-01-04T12:56:04,763 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-01-04T12:56:04,765 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-01-04T12:56:04,773 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-01-04T12:56:04,776 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-01-04T12:56:04,783 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-01-04T12:56:04,786 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-01-04T12:56:04,794 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-01-04T12:56:04,796 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-01-04T12:56:04,804 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-01-04T12:56:04,806 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-01-04T12:56:04,815 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-01-04T12:56:04,817 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-01-04T12:56:04,825 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-01-04T12:56:04,827 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-01-04T12:56:04,835 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-01-04T12:56:04,838 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-01-04T12:56:04,845 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-01-04T12:56:04,848 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-01-04T12:56:04,855 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-01-04T12:56:04,858 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-01-04T12:56:04,866 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-01-04T12:56:04,868 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-01-04T12:56:04,875 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:04,884 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-01-04T12:56:04,886 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-01-04T12:56:04,892 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-01-04T12:56:04,898 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-01-04T12:56:04,905 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,907 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,915 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,921 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,929 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,935 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,941 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,948 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,954 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,961 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,968 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,974 copying build/lib/sequana/modules_report/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,982 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,988 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,992 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:04,999 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:05,007 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:05,013 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:05,019 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-01-04T12:56:05,028 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,034 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,041 copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,049 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,056 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,064 creating build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,067 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,074 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,080 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,086 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,093 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,098 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,104 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,110 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,116 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,122 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,130 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,136 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,143 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,151 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,157 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,164 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,170 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,176 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-01-04T12:56:05,182 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,190 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,200 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,207 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,215 creating build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,218 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,225 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,231 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,237 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,243 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,250 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,256 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,263 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,269 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,280 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,287 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,295 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,309 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,314 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,321 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,328 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-01-04T12:56:05,335 creating build/bdist.linux-armv7l/wheel/sequana/plots 2021-01-04T12:56:05,337 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-01-04T12:56:05,342 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-01-04T12:56:05,348 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-01-04T12:56:05,352 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,360 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,366 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,375 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,380 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,385 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,399 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2021-01-04T12:56:05,405 running install_egg_info 2021-01-04T12:56:05,457 running egg_info 2021-01-04T12:56:05,460 writing requirements to sequana.egg-info/requires.txt 2021-01-04T12:56:05,463 writing top-level names to sequana.egg-info/top_level.txt 2021-01-04T12:56:05,467 writing entry points to sequana.egg-info/entry_points.txt 2021-01-04T12:56:05,469 writing sequana.egg-info/PKG-INFO 2021-01-04T12:56:05,475 writing dependency_links to sequana.egg-info/dependency_links.txt 2021-01-04T12:56:05,732 reading manifest file 'sequana.egg-info/SOURCES.txt' 2021-01-04T12:56:05,771 reading manifest template 'MANIFEST.in' 2021-01-04T12:56:05,781 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-01-04T12:56:05,788 warning: no previously-included files matching '*pyc' found under directory '*' 2021-01-04T12:56:08,506 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-01-04T12:56:08,513 warning: no previously-included files matching '*' found under directory 'test' 2021-01-04T12:56:08,520 warning: no previously-included files found matching 'sequana/rm2.py' 2021-01-04T12:56:08,609 writing manifest file 'sequana.egg-info/SOURCES.txt' 2021-01-04T12:56:08,617 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.9.8-py3.5.egg-info 2021-01-04T12:56:08,664 running install_scripts 2021-01-04T12:56:08,997 creating build/bdist.linux-armv7l/wheel/sequana-0.9.8.dist-info/WHEEL 2021-01-04T12:56:28,612 Building wheel for sequana (setup.py): finished with status 'done' 2021-01-04T12:56:28,985 Created wheel for sequana: filename=sequana-0.9.8-py3-none-any.whl size=21343940 sha256=103274642cdeb6dab96a62b7f0df7cd961d70e3e856823bd6d5ef85b37b0477b 2021-01-04T12:56:28,986 Stored in directory: /tmp/pip-ephem-wheel-cache-p9vq360d/wheels/88/27/af/acd1e1c194c3ba96f129d804046b0123b1afc711ea63ea4f23 2021-01-04T12:56:28,991 Successfully built sequana 2021-01-04T12:56:32,823 Removed build tracker: '/tmp/pip-req-tracker-2fjledh5'