2021-01-09T17:41:29,044 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-09T17:41:29,805 Created temporary directory: /tmp/pip-ephem-wheel-cache-pb75blkw 2021-01-09T17:41:29,810 Created temporary directory: /tmp/pip-req-tracker-_osd2ylz 2021-01-09T17:41:29,811 Initialized build tracking at /tmp/pip-req-tracker-_osd2ylz 2021-01-09T17:41:29,812 Created build tracker: /tmp/pip-req-tracker-_osd2ylz 2021-01-09T17:41:29,812 Entered build tracker: /tmp/pip-req-tracker-_osd2ylz 2021-01-09T17:41:29,814 Created temporary directory: /tmp/pip-wheel-jsek7whm 2021-01-09T17:41:29,831 1 location(s) to search for versions of jcvi: 2021-01-09T17:41:29,831 * https://pypi.org/simple/jcvi/ 2021-01-09T17:41:29,831 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-01-09T17:41:29,834 Getting page https://pypi.org/simple/jcvi/ 2021-01-09T17:41:29,838 Found index url 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-01-09T17:41:30,530 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-01-09T17:41:30,531 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-01-09T17:41:30,562 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-01-09T17:41:30,565 Using version 1.1.1 (newest of versions: 1.1.1) 2021-01-09T17:41:30,573 Collecting jcvi==1.1.1 2021-01-09T17:41:30,579 Created temporary directory: /tmp/pip-unpack-0j2jye17 2021-01-09T17:41:30,841 Downloading jcvi-1.1.1.tar.gz (829 kB) 2021-01-09T17:41:32,748 Added jcvi==1.1.1 from https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb to build tracker '/tmp/pip-req-tracker-_osd2ylz' 2021-01-09T17:41:32,750 Running setup.py (path:/tmp/pip-wheel-jsek7whm/jcvi/setup.py) egg_info for package jcvi 2021-01-09T17:41:32,751 Created temporary directory: /tmp/pip-pip-egg-info-imqtjzr4 2021-01-09T17:41:32,752 Running command python setup.py egg_info 2021-01-09T17:41:37,961 running egg_info 2021-01-09T17:41:37,968 creating /tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info 2021-01-09T17:41:37,973 writing top-level names to /tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info/top_level.txt 2021-01-09T17:41:37,975 writing dependency_links to /tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info/dependency_links.txt 2021-01-09T17:41:37,978 writing /tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info/PKG-INFO 2021-01-09T17:41:37,985 writing requirements to /tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info/requires.txt 2021-01-09T17:41:37,989 writing manifest file '/tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info/SOURCES.txt' 2021-01-09T17:41:38,039 reading manifest file '/tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info/SOURCES.txt' 2021-01-09T17:41:38,042 reading manifest template 'MANIFEST.in' 2021-01-09T17:41:38,071 writing manifest file '/tmp/pip-pip-egg-info-imqtjzr4/jcvi.egg-info/SOURCES.txt' 2021-01-09T17:41:38,074 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.1' to '1.1.1' 2021-01-09T17:41:38,075 warnings.warn(tmpl.format(**locals())) 2021-01-09T17:41:38,304 Source in /tmp/pip-wheel-jsek7whm/jcvi has version 1.1.1, which satisfies requirement jcvi==1.1.1 from https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb 2021-01-09T17:41:38,306 Removed jcvi==1.1.1 from https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb from build tracker '/tmp/pip-req-tracker-_osd2ylz' 2021-01-09T17:41:38,313 Building wheels for collected packages: jcvi 2021-01-09T17:41:38,322 Created temporary directory: /tmp/pip-wheel-ooabkqpi 2021-01-09T17:41:38,323 Building wheel for jcvi (setup.py): started 2021-01-09T17:41:38,324 Destination directory: /tmp/pip-wheel-ooabkqpi 2021-01-09T17:41:38,324 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jsek7whm/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jsek7whm/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ooabkqpi 2021-01-09T17:41:42,149 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.1' to '1.1.1' 2021-01-09T17:41:42,150 warnings.warn(tmpl.format(**locals())) 2021-01-09T17:41:42,308 running bdist_wheel 2021-01-09T17:41:42,319 running build 2021-01-09T17:41:42,320 running build_py 2021-01-09T17:41:42,385 creating build 2021-01-09T17:41:42,386 creating build/lib.linux-armv7l-3.5 2021-01-09T17:41:42,388 creating build/lib.linux-armv7l-3.5/jcvi 2021-01-09T17:41:42,391 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T17:41:42,395 copying jcvi/_version.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T17:41:42,402 creating build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,404 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,408 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,415 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,421 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,427 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,433 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,440 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,445 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,452 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,457 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,461 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,467 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,475 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,481 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,486 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,493 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,499 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,509 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,517 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,523 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,529 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,535 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,543 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:41:42,556 creating build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,558 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,565 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,569 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,575 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,581 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,586 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,593 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,599 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,605 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,612 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,617 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,625 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,632 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:41:42,642 creating build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,644 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,649 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,655 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,662 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,669 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,681 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,693 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,703 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,711 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,721 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,725 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,730 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,746 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,753 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,759 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,772 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,777 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,786 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,793 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,798 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,804 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,811 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,818 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,826 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,833 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,840 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,845 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,851 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,857 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,863 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:42,876 creating build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,879 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,885 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,892 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,896 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,904 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,917 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,926 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,932 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,939 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,945 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,953 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,958 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,965 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,971 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,976 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,982 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,989 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:42,996 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,003 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,014 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,020 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,027 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,034 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,041 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,047 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,053 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,059 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,075 creating build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,078 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,087 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,092 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,098 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,104 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,117 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,124 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,131 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,135 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,139 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,147 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,153 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,162 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,169 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,177 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,184 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,192 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:41:43,203 creating build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,206 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,212 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,218 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,230 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,235 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,241 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,245 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,253 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,259 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,266 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,272 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:41:43,283 creating build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,284 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,290 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,294 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,298 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,305 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,309 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,316 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,326 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,331 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,337 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,343 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,346 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,353 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,366 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,374 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,379 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,387 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,393 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,399 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,406 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,413 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,423 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,429 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,436 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,442 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,449 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,458 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:41:43,469 creating build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,473 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,480 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,485 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,491 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,497 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,503 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,510 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,517 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,523 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,531 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,539 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,547 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:41:43,559 creating build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,562 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,568 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,574 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,581 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,589 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,602 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,610 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,616 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,629 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,637 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,645 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,652 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:41:43,664 creating build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,667 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,675 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,681 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,688 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,695 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,706 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,717 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,723 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,728 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,735 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:41:43,744 creating build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,746 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,749 running egg_info 2021-01-09T17:41:43,769 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-01-09T17:41:43,772 writing jcvi.egg-info/PKG-INFO 2021-01-09T17:41:43,778 writing top-level names to jcvi.egg-info/top_level.txt 2021-01-09T17:41:43,780 writing requirements to jcvi.egg-info/requires.txt 2021-01-09T17:41:43,838 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T17:41:43,857 reading manifest template 'MANIFEST.in' 2021-01-09T17:41:43,895 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T17:41:43,911 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:41:43,917 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:41:43,922 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,929 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,945 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,954 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,964 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,972 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,977 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,983 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,992 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:43,1000 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:44,013 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:44,021 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:41:44,072 UPDATING build/lib.linux-armv7l-3.5/jcvi/_version.py 2021-01-09T17:41:44,075 set build/lib.linux-armv7l-3.5/jcvi/_version.py to 'v1.1.1' 2021-01-09T17:41:44,076 running build_ext 2021-01-09T17:41:44,264 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-01-09T17:41:45,985 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jsek7whm/jcvi/jcvi/assembly/chic.pyx 2021-01-09T17:41:45,987 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T17:41:56,846 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-01-09T17:41:56,865 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jsek7whm/jcvi/jcvi/formats/cblast.pyx 2021-01-09T17:41:56,866 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T17:42:00,088 building 'jcvi.assembly.chic' extension 2021-01-09T17:42:00,092 creating build/temp.linux-armv7l-3.5 2021-01-09T17:42:00,094 creating build/temp.linux-armv7l-3.5/jcvi 2021-01-09T17:42:00,096 creating build/temp.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:42:00,098 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include -I/usr/include/python3.5m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -O3 2021-01-09T17:42:00,944 In file included from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, 2021-01-09T17:42:00,945 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-09T17:42:00,946 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-09T17:42:00,947 from jcvi/assembly/chic.c:610: 2021-01-09T17:42:00,948 /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-09T17:42:00,949 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-09T17:42:00,950 ^~~~~~~ 2021-01-09T17:42:08,348 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T17:42:08,590 building 'jcvi.formats.cblast' extension 2021-01-09T17:42:08,593 creating build/temp.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:42:08,594 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -O3 2021-01-09T17:42:21,588 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T17:42:21,864 installing to build/bdist.linux-armv7l/wheel 2021-01-09T17:42:21,865 running install 2021-01-09T17:42:21,867 running install_lib 2021-01-09T17:42:21,876 creating build/bdist.linux-armv7l 2021-01-09T17:42:21,877 creating build/bdist.linux-armv7l/wheel 2021-01-09T17:42:21,881 creating build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T17:42:21,885 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,888 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,892 copying build/lib.linux-armv7l-3.5/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,899 copying build/lib.linux-armv7l-3.5/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,905 copying build/lib.linux-armv7l-3.5/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,913 copying build/lib.linux-armv7l-3.5/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,922 copying build/lib.linux-armv7l-3.5/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,930 copying build/lib.linux-armv7l-3.5/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,937 copying build/lib.linux-armv7l-3.5/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,945 copying build/lib.linux-armv7l-3.5/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,949 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,953 copying build/lib.linux-armv7l-3.5/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,958 copying build/lib.linux-armv7l-3.5/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,965 copying build/lib.linux-armv7l-3.5/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,973 copying build/lib.linux-armv7l-3.5/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,979 copying build/lib.linux-armv7l-3.5/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,988 copying build/lib.linux-armv7l-3.5/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:21,995 copying build/lib.linux-armv7l-3.5/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:22,005 copying build/lib.linux-armv7l-3.5/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:22,013 copying build/lib.linux-armv7l-3.5/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:22,023 copying build/lib.linux-armv7l-3.5/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:22,032 copying build/lib.linux-armv7l-3.5/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:22,040 copying build/lib.linux-armv7l-3.5/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:22,047 copying build/lib.linux-armv7l-3.5/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:42:22,058 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,063 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,067 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,075 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,079 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,084 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,092 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,099 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,108 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,116 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,120 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,130 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,136 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,147 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,153 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:42:22,169 copying build/lib.linux-armv7l-3.5/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,177 copying build/lib.linux-armv7l-3.5/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,183 copying build/lib.linux-armv7l-3.5/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,191 copying build/lib.linux-armv7l-3.5/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,195 copying build/lib.linux-armv7l-3.5/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,199 copying build/lib.linux-armv7l-3.5/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,204 copying build/lib.linux-armv7l-3.5/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,210 copying build/lib.linux-armv7l-3.5/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,217 copying build/lib.linux-armv7l-3.5/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,226 copying build/lib.linux-armv7l-3.5/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,233 copying build/lib.linux-armv7l-3.5/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,240 copying build/lib.linux-armv7l-3.5/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,245 copying build/lib.linux-armv7l-3.5/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:42:22,253 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,255 copying build/lib.linux-armv7l-3.5/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,261 copying build/lib.linux-armv7l-3.5/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,269 copying build/lib.linux-armv7l-3.5/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,276 copying build/lib.linux-armv7l-3.5/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,282 copying build/lib.linux-armv7l-3.5/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,296 copying build/lib.linux-armv7l-3.5/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,308 copying build/lib.linux-armv7l-3.5/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,319 copying build/lib.linux-armv7l-3.5/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,329 copying build/lib.linux-armv7l-3.5/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,338 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,385 copying build/lib.linux-armv7l-3.5/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,391 copying build/lib.linux-armv7l-3.5/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,398 copying build/lib.linux-armv7l-3.5/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,416 copying build/lib.linux-armv7l-3.5/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,423 copying build/lib.linux-armv7l-3.5/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,430 copying build/lib.linux-armv7l-3.5/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,444 copying build/lib.linux-armv7l-3.5/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,448 copying build/lib.linux-armv7l-3.5/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,458 copying build/lib.linux-armv7l-3.5/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,467 copying build/lib.linux-armv7l-3.5/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,475 copying build/lib.linux-armv7l-3.5/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,481 copying build/lib.linux-armv7l-3.5/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,488 copying build/lib.linux-armv7l-3.5/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,495 copying build/lib.linux-armv7l-3.5/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,503 copying build/lib.linux-armv7l-3.5/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,510 copying build/lib.linux-armv7l-3.5/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,518 copying build/lib.linux-armv7l-3.5/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,524 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,531 copying build/lib.linux-armv7l-3.5/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,539 copying build/lib.linux-armv7l-3.5/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,548 copying build/lib.linux-armv7l-3.5/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,556 copying build/lib.linux-armv7l-3.5/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:42:22,566 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,568 copying build/lib.linux-armv7l-3.5/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,576 copying build/lib.linux-armv7l-3.5/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,586 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,591 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,597 copying build/lib.linux-armv7l-3.5/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,607 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,619 copying build/lib.linux-armv7l-3.5/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,629 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,637 copying build/lib.linux-armv7l-3.5/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,645 copying build/lib.linux-armv7l-3.5/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,651 copying build/lib.linux-armv7l-3.5/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,659 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,664 copying build/lib.linux-armv7l-3.5/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,670 copying build/lib.linux-armv7l-3.5/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,678 copying build/lib.linux-armv7l-3.5/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,685 copying build/lib.linux-armv7l-3.5/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,693 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,700 copying build/lib.linux-armv7l-3.5/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,706 copying build/lib.linux-armv7l-3.5/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,714 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,740 copying build/lib.linux-armv7l-3.5/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,751 copying build/lib.linux-armv7l-3.5/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,758 copying build/lib.linux-armv7l-3.5/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,766 copying build/lib.linux-armv7l-3.5/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,774 copying build/lib.linux-armv7l-3.5/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,781 copying build/lib.linux-armv7l-3.5/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,787 copying build/lib.linux-armv7l-3.5/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,795 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,803 copying build/lib.linux-armv7l-3.5/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:42:22,816 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,818 copying build/lib.linux-armv7l-3.5/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,828 copying build/lib.linux-armv7l-3.5/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,834 copying build/lib.linux-armv7l-3.5/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,842 copying build/lib.linux-armv7l-3.5/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,851 copying build/lib.linux-armv7l-3.5/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,865 copying build/lib.linux-armv7l-3.5/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,872 copying build/lib.linux-armv7l-3.5/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,880 copying build/lib.linux-armv7l-3.5/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,887 copying build/lib.linux-armv7l-3.5/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,891 copying build/lib.linux-armv7l-3.5/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,899 copying build/lib.linux-armv7l-3.5/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,907 copying build/lib.linux-armv7l-3.5/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,916 copying build/lib.linux-armv7l-3.5/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,925 copying build/lib.linux-armv7l-3.5/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,934 copying build/lib.linux-armv7l-3.5/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,943 copying build/lib.linux-armv7l-3.5/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,951 copying build/lib.linux-armv7l-3.5/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:42:22,959 copying build/lib.linux-armv7l-3.5/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T17:42:22,967 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:22,970 copying build/lib.linux-armv7l-3.5/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:22,977 copying build/lib.linux-armv7l-3.5/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:22,983 copying build/lib.linux-armv7l-3.5/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:22,997 copying build/lib.linux-armv7l-3.5/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,004 copying build/lib.linux-armv7l-3.5/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,012 copying build/lib.linux-armv7l-3.5/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,017 copying build/lib.linux-armv7l-3.5/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,026 copying build/lib.linux-armv7l-3.5/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,033 copying build/lib.linux-armv7l-3.5/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,041 copying build/lib.linux-armv7l-3.5/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,047 copying build/lib.linux-armv7l-3.5/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:42:23,059 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,062 copying build/lib.linux-armv7l-3.5/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,069 copying build/lib.linux-armv7l-3.5/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,075 copying build/lib.linux-armv7l-3.5/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,081 copying build/lib.linux-armv7l-3.5/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,089 copying build/lib.linux-armv7l-3.5/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,095 copying build/lib.linux-armv7l-3.5/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,103 copying build/lib.linux-armv7l-3.5/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,113 copying build/lib.linux-armv7l-3.5/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,119 copying build/lib.linux-armv7l-3.5/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,126 copying build/lib.linux-armv7l-3.5/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,133 copying build/lib.linux-armv7l-3.5/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,138 copying build/lib.linux-armv7l-3.5/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,146 copying build/lib.linux-armv7l-3.5/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,160 copying build/lib.linux-armv7l-3.5/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,168 copying build/lib.linux-armv7l-3.5/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,175 copying build/lib.linux-armv7l-3.5/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,188 copying build/lib.linux-armv7l-3.5/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,199 copying build/lib.linux-armv7l-3.5/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,206 copying build/lib.linux-armv7l-3.5/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,213 copying build/lib.linux-armv7l-3.5/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,220 copying build/lib.linux-armv7l-3.5/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,230 copying build/lib.linux-armv7l-3.5/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,236 copying build/lib.linux-armv7l-3.5/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,244 copying build/lib.linux-armv7l-3.5/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,250 copying build/lib.linux-armv7l-3.5/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,257 copying build/lib.linux-armv7l-3.5/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,265 copying build/lib.linux-armv7l-3.5/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:42:23,271 copying build/lib.linux-armv7l-3.5/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T17:42:23,278 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,281 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,289 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,296 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,303 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,311 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,316 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,322 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,328 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,336 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,343 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,351 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,359 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:42:23,369 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,371 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,378 copying build/lib.linux-armv7l-3.5/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,386 copying build/lib.linux-armv7l-3.5/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,393 copying build/lib.linux-armv7l-3.5/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,400 copying build/lib.linux-armv7l-3.5/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,408 copying build/lib.linux-armv7l-3.5/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,414 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,418 copying build/lib.linux-armv7l-3.5/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,427 copying build/lib.linux-armv7l-3.5/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,432 copying build/lib.linux-armv7l-3.5/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,439 copying build/lib.linux-armv7l-3.5/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,446 copying build/lib.linux-armv7l-3.5/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:42:23,456 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,458 copying build/lib.linux-armv7l-3.5/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,464 copying build/lib.linux-armv7l-3.5/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,468 copying build/lib.linux-armv7l-3.5/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,474 copying build/lib.linux-armv7l-3.5/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,480 copying build/lib.linux-armv7l-3.5/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,491 copying build/lib.linux-armv7l-3.5/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,502 copying build/lib.linux-armv7l-3.5/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,510 copying build/lib.linux-armv7l-3.5/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,516 copying build/lib.linux-armv7l-3.5/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,523 copying build/lib.linux-armv7l-3.5/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:42:23,529 running install_egg_info 2021-01-09T17:42:23,552 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.1-py3.5.egg-info 2021-01-09T17:42:23,588 running install_scripts 2021-01-09T17:42:23,771 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.1.dist-info/WHEEL 2021-01-09T17:42:26,187 Building wheel for jcvi (setup.py): finished with status 'done' 2021-01-09T17:42:26,213 Created wheel for jcvi: filename=jcvi-1.1.1-cp35-cp35m-linux_armv7l.whl size=1155215 sha256=13105c06c8d25080cedf546c83595d5f89ac5a8931a55913b639e4c8e9052cc4 2021-01-09T17:42:26,214 Stored in directory: /tmp/pip-ephem-wheel-cache-pb75blkw/wheels/37/46/2c/6ff833ec4f3dfe381f29f76f763ec4ee975cac1df92db3d18e 2021-01-09T17:42:26,218 Successfully built jcvi 2021-01-09T17:42:26,628 Removed build tracker: '/tmp/pip-req-tracker-_osd2ylz'