2021-01-09T17:43:48,037 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-09T17:43:48,704 Created temporary directory: /tmp/pip-ephem-wheel-cache-g187m5nz 2021-01-09T17:43:48,708 Created temporary directory: /tmp/pip-req-tracker-86s3h61n 2021-01-09T17:43:48,709 Initialized build tracking at /tmp/pip-req-tracker-86s3h61n 2021-01-09T17:43:48,709 Created build tracker: /tmp/pip-req-tracker-86s3h61n 2021-01-09T17:43:48,709 Entered build tracker: /tmp/pip-req-tracker-86s3h61n 2021-01-09T17:43:48,711 Created temporary directory: /tmp/pip-wheel-dqijcbo6 2021-01-09T17:43:48,724 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2021-01-09T17:43:48,726 2 location(s) to search for versions of jcvi: 2021-01-09T17:43:48,726 * https://pypi.org/simple/jcvi/ 2021-01-09T17:43:48,726 * https://pypi.ngc.nvidia.com/jcvi/ 2021-01-09T17:43:48,727 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-01-09T17:43:48,729 Getting page https://pypi.org/simple/jcvi/ 2021-01-09T17:43:48,732 Found index url https://pypi.org/simple 2021-01-09T17:43:49,320 Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7 2021-01-09T17:43:49,321 Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8 2021-01-09T17:43:49,322 Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from 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https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2021-01-09T17:43:49,350 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2021-01-09T17:43:49,351 Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7 2021-01-09T17:43:49,351 Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8 2021-01-09T17:43:49,352 Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9 2021-01-09T17:43:49,353 Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10 2021-01-09T17:43:49,354 Found link https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 (from https://pypi.org/simple/jcvi/), version: 1.0.11 2021-01-09T17:43:49,354 Found link https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd (from https://pypi.org/simple/jcvi/), version: 1.0.12 2021-01-09T17:43:49,355 Found link https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 (from https://pypi.org/simple/jcvi/), version: 1.0.13 2021-01-09T17:43:49,356 Found link https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-01-09T17:43:49,357 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-01-09T17:43:49,357 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-01-09T17:43:49,358 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/jcvi/ 2021-01-09T17:43:49,359 Getting page https://pypi.ngc.nvidia.com/jcvi/ 2021-01-09T17:43:49,361 Found index url https://pypi.ngc.nvidia.com 2021-01-09T17:43:50,403 Could not fetch URL https://pypi.ngc.nvidia.com/jcvi/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/jcvi/ - skipping 2021-01-09T17:43:50,441 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-01-09T17:43:50,443 Using version 1.1.2 (newest of versions: 1.1.2) 2021-01-09T17:43:50,451 Collecting jcvi==1.1.2 2021-01-09T17:43:50,455 Created temporary directory: /tmp/pip-unpack-d7n84ejo 2021-01-09T17:43:50,729 Downloading jcvi-1.1.2.tar.gz (823 kB) 2021-01-09T17:43:52,076 Added jcvi==1.1.2 from https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 to build tracker '/tmp/pip-req-tracker-86s3h61n' 2021-01-09T17:43:52,078 Running setup.py (path:/tmp/pip-wheel-dqijcbo6/jcvi/setup.py) egg_info for package jcvi 2021-01-09T17:43:52,079 Created temporary directory: /tmp/pip-pip-egg-info-fbzg2www 2021-01-09T17:43:52,080 Running command python setup.py egg_info 2021-01-09T17:43:55,997 running egg_info 2021-01-09T17:43:56,001 creating /tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info 2021-01-09T17:43:56,004 writing /tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info/PKG-INFO 2021-01-09T17:43:56,011 writing requirements to /tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info/requires.txt 2021-01-09T17:43:56,013 writing dependency_links to /tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info/dependency_links.txt 2021-01-09T17:43:56,015 writing top-level names to /tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info/top_level.txt 2021-01-09T17:43:56,019 writing manifest file '/tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info/SOURCES.txt' 2021-01-09T17:43:56,110 reading manifest file '/tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info/SOURCES.txt' 2021-01-09T17:43:56,113 reading manifest template 'MANIFEST.in' 2021-01-09T17:43:56,137 writing manifest file '/tmp/pip-pip-egg-info-fbzg2www/jcvi.egg-info/SOURCES.txt' 2021-01-09T17:43:56,139 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.2' to '1.1.2' 2021-01-09T17:43:56,140 warnings.warn(tmpl.format(**locals())) 2021-01-09T17:43:56,346 Source in /tmp/pip-wheel-dqijcbo6/jcvi has version 1.1.2, which satisfies requirement jcvi==1.1.2 from https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 2021-01-09T17:43:56,348 Removed jcvi==1.1.2 from https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 from build tracker '/tmp/pip-req-tracker-86s3h61n' 2021-01-09T17:43:56,354 Building wheels for collected packages: jcvi 2021-01-09T17:43:56,362 Created temporary directory: /tmp/pip-wheel-qqj3qzl0 2021-01-09T17:43:56,363 Building wheel for jcvi (setup.py): started 2021-01-09T17:43:56,364 Destination directory: /tmp/pip-wheel-qqj3qzl0 2021-01-09T17:43:56,364 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dqijcbo6/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dqijcbo6/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qqj3qzl0 2021-01-09T17:43:59,628 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.2' to '1.1.2' 2021-01-09T17:43:59,629 warnings.warn(tmpl.format(**locals())) 2021-01-09T17:43:59,822 running bdist_wheel 2021-01-09T17:43:59,833 running build 2021-01-09T17:43:59,834 running build_py 2021-01-09T17:43:59,843 creating build 2021-01-09T17:43:59,844 creating build/lib.linux-armv7l-3.5 2021-01-09T17:43:59,845 creating build/lib.linux-armv7l-3.5/jcvi 2021-01-09T17:43:59,847 copying jcvi/_version.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T17:43:59,850 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T17:43:59,855 creating build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,856 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,860 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,863 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,866 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,870 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,874 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,879 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,885 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,890 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,894 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,897 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,901 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T17:43:59,908 creating build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,909 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,913 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,919 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,924 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,930 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,936 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,939 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,945 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,949 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,952 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T17:43:59,964 creating build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:43:59,967 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:43:59,974 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:43:59,979 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:43:59,984 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:43:59,987 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:43:59,992 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:43:59,997 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,002 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,008 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,015 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,022 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,029 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,034 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,039 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,042 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,046 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,050 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,055 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,058 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,062 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,066 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,069 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,073 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T17:44:00,083 creating build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,085 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,093 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,097 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,101 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,103 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,107 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,109 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,114 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,120 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,126 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,133 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,139 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T17:44:00,147 creating build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,149 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,154 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,160 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,163 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,168 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,171 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,175 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,178 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,184 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,190 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,195 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,199 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,202 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,205 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,208 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,212 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,215 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,220 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,223 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,351 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,356 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,362 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,368 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,373 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,381 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,388 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,393 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T17:44:00,399 creating build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,401 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,405 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,411 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,415 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,422 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,426 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,435 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,439 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,443 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,448 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,451 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,456 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,464 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,468 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,473 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,477 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,481 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,484 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,491 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,494 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,501 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,508 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,512 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,517 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,521 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,525 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,530 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,535 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,539 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,542 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,548 creating build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,550 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,553 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,557 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,561 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,565 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,568 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,572 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,575 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,579 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,583 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,588 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,591 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,594 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,600 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,602 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,606 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,610 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,613 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,618 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,624 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,628 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,631 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,636 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,639 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,642 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,646 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,650 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,656 creating build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,657 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,660 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,663 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,666 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,669 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,673 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,677 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,679 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,683 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,686 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,690 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,694 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,697 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T17:44:00,703 creating build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,705 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,709 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,713 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,717 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,720 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,722 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,726 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,730 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,733 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,737 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,741 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T17:44:00,749 creating build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,751 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,754 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,758 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,762 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,768 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,771 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,774 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,777 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,781 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,785 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,789 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,793 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,797 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,806 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,811 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,817 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,821 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T17:44:00,826 creating build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,827 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,830 running egg_info 2021-01-09T17:44:00,848 writing jcvi.egg-info/PKG-INFO 2021-01-09T17:44:00,852 writing top-level names to jcvi.egg-info/top_level.txt 2021-01-09T17:44:00,854 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-01-09T17:44:00,856 writing requirements to jcvi.egg-info/requires.txt 2021-01-09T17:44:00,894 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T17:44:00,906 reading manifest template 'MANIFEST.in' 2021-01-09T17:44:00,939 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T17:44:00,952 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:00,957 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:00,961 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,965 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,974 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,979 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,984 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,989 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,993 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:00,996 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:01,001 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:01,004 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:01,010 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:01,015 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T17:44:01,048 UPDATING build/lib.linux-armv7l-3.5/jcvi/_version.py 2021-01-09T17:44:01,050 set build/lib.linux-armv7l-3.5/jcvi/_version.py to 'v1.1.2' 2021-01-09T17:44:01,051 running build_ext 2021-01-09T17:44:01,177 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-01-09T17:44:02,623 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dqijcbo6/jcvi/jcvi/assembly/chic.pyx 2021-01-09T17:44:02,624 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T17:44:12,013 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-01-09T17:44:12,033 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dqijcbo6/jcvi/jcvi/formats/cblast.pyx 2021-01-09T17:44:12,034 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T17:44:14,785 building 'jcvi.assembly.chic' extension 2021-01-09T17:44:14,786 creating build/temp.linux-armv7l-3.5 2021-01-09T17:44:14,787 creating build/temp.linux-armv7l-3.5/jcvi 2021-01-09T17:44:14,788 creating build/temp.linux-armv7l-3.5/jcvi/assembly 2021-01-09T17:44:14,789 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include -I/usr/include/python3.5m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -O3 2021-01-09T17:44:15,860 In file included from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, 2021-01-09T17:44:15,861 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-09T17:44:15,862 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-09T17:44:15,863 from jcvi/assembly/chic.c:610: 2021-01-09T17:44:15,864 /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-09T17:44:15,866 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-09T17:44:15,867 ^~~~~~~ 2021-01-09T17:44:22,162 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T17:44:22,363 building 'jcvi.formats.cblast' extension 2021-01-09T17:44:22,365 creating build/temp.linux-armv7l-3.5/jcvi/formats 2021-01-09T17:44:22,367 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -O3 2021-01-09T17:44:33,538 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T17:44:33,765 installing to build/bdist.linux-armv7l/wheel 2021-01-09T17:44:33,766 running install 2021-01-09T17:44:33,767 running install_lib 2021-01-09T17:44:33,774 creating build/bdist.linux-armv7l 2021-01-09T17:44:33,775 creating build/bdist.linux-armv7l/wheel 2021-01-09T17:44:33,778 creating build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T17:44:33,779 copying build/lib.linux-armv7l-3.5/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T17:44:33,784 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,785 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,788 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,792 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,795 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,798 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,801 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,804 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,808 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,813 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,818 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,823 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,829 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T17:44:33,835 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,837 copying build/lib.linux-armv7l-3.5/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,841 copying build/lib.linux-armv7l-3.5/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,845 copying build/lib.linux-armv7l-3.5/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,849 copying build/lib.linux-armv7l-3.5/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,854 copying build/lib.linux-armv7l-3.5/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,863 copying build/lib.linux-armv7l-3.5/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,868 copying build/lib.linux-armv7l-3.5/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,878 copying build/lib.linux-armv7l-3.5/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,883 copying build/lib.linux-armv7l-3.5/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,889 copying build/lib.linux-armv7l-3.5/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T17:44:33,896 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,898 copying build/lib.linux-armv7l-3.5/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,904 copying build/lib.linux-armv7l-3.5/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,911 copying build/lib.linux-armv7l-3.5/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,915 copying build/lib.linux-armv7l-3.5/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,918 copying build/lib.linux-armv7l-3.5/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,921 copying build/lib.linux-armv7l-3.5/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,924 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,927 copying build/lib.linux-armv7l-3.5/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,930 copying build/lib.linux-armv7l-3.5/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,935 copying build/lib.linux-armv7l-3.5/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,939 copying build/lib.linux-armv7l-3.5/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,943 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,945 copying build/lib.linux-armv7l-3.5/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,949 copying build/lib.linux-armv7l-3.5/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,952 copying build/lib.linux-armv7l-3.5/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,955 copying build/lib.linux-armv7l-3.5/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,959 copying build/lib.linux-armv7l-3.5/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,964 copying build/lib.linux-armv7l-3.5/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,968 copying build/lib.linux-armv7l-3.5/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,974 copying build/lib.linux-armv7l-3.5/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,980 copying build/lib.linux-armv7l-3.5/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,985 copying build/lib.linux-armv7l-3.5/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,990 copying build/lib.linux-armv7l-3.5/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T17:44:33,995 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:33,997 copying build/lib.linux-armv7l-3.5/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,001 copying build/lib.linux-armv7l-3.5/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,005 copying build/lib.linux-armv7l-3.5/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,008 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,011 copying build/lib.linux-armv7l-3.5/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,014 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,017 copying build/lib.linux-armv7l-3.5/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,020 copying build/lib.linux-armv7l-3.5/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,024 copying build/lib.linux-armv7l-3.5/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,027 copying build/lib.linux-armv7l-3.5/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,031 copying build/lib.linux-armv7l-3.5/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,036 copying build/lib.linux-armv7l-3.5/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T17:44:34,042 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,043 copying build/lib.linux-armv7l-3.5/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,047 copying build/lib.linux-armv7l-3.5/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,053 copying build/lib.linux-armv7l-3.5/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,056 copying build/lib.linux-armv7l-3.5/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,061 copying build/lib.linux-armv7l-3.5/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,064 copying build/lib.linux-armv7l-3.5/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,068 copying build/lib.linux-armv7l-3.5/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,071 copying build/lib.linux-armv7l-3.5/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,076 copying build/lib.linux-armv7l-3.5/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,082 copying build/lib.linux-armv7l-3.5/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,088 copying build/lib.linux-armv7l-3.5/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,093 copying build/lib.linux-armv7l-3.5/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,095 copying build/lib.linux-armv7l-3.5/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,099 copying build/lib.linux-armv7l-3.5/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,102 copying build/lib.linux-armv7l-3.5/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,106 copying build/lib.linux-armv7l-3.5/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,110 copying build/lib.linux-armv7l-3.5/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,116 copying build/lib.linux-armv7l-3.5/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,121 copying build/lib.linux-armv7l-3.5/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,127 copying build/lib.linux-armv7l-3.5/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,132 copying build/lib.linux-armv7l-3.5/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,136 copying build/lib.linux-armv7l-3.5/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,139 copying build/lib.linux-armv7l-3.5/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,143 copying build/lib.linux-armv7l-3.5/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,147 copying build/lib.linux-armv7l-3.5/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,151 copying build/lib.linux-armv7l-3.5/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,156 copying build/lib.linux-armv7l-3.5/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T17:44:34,161 copying build/lib.linux-armv7l-3.5/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T17:44:34,168 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,170 copying build/lib.linux-armv7l-3.5/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,175 copying build/lib.linux-armv7l-3.5/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,180 copying build/lib.linux-armv7l-3.5/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,183 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,187 copying build/lib.linux-armv7l-3.5/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,191 copying build/lib.linux-armv7l-3.5/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,195 copying build/lib.linux-armv7l-3.5/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,206 copying build/lib.linux-armv7l-3.5/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,212 copying build/lib.linux-armv7l-3.5/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,216 copying build/lib.linux-armv7l-3.5/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,220 copying build/lib.linux-armv7l-3.5/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,223 copying build/lib.linux-armv7l-3.5/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,226 copying build/lib.linux-armv7l-3.5/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,231 copying build/lib.linux-armv7l-3.5/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,233 copying build/lib.linux-armv7l-3.5/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,236 copying build/lib.linux-armv7l-3.5/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,240 copying build/lib.linux-armv7l-3.5/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,244 copying build/lib.linux-armv7l-3.5/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,247 copying build/lib.linux-armv7l-3.5/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,254 copying build/lib.linux-armv7l-3.5/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,259 copying build/lib.linux-armv7l-3.5/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,268 copying build/lib.linux-armv7l-3.5/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,277 copying build/lib.linux-armv7l-3.5/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,280 copying build/lib.linux-armv7l-3.5/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,285 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,306 copying build/lib.linux-armv7l-3.5/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,310 copying build/lib.linux-armv7l-3.5/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,314 copying build/lib.linux-armv7l-3.5/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,319 copying build/lib.linux-armv7l-3.5/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,324 copying build/lib.linux-armv7l-3.5/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,327 copying build/lib.linux-armv7l-3.5/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,330 copying build/lib.linux-armv7l-3.5/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T17:44:34,337 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,339 copying build/lib.linux-armv7l-3.5/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,345 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,360 copying build/lib.linux-armv7l-3.5/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,365 copying build/lib.linux-armv7l-3.5/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,369 copying build/lib.linux-armv7l-3.5/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,373 copying build/lib.linux-armv7l-3.5/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,376 copying build/lib.linux-armv7l-3.5/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,380 copying build/lib.linux-armv7l-3.5/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,384 copying build/lib.linux-armv7l-3.5/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,388 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,393 copying build/lib.linux-armv7l-3.5/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,401 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,406 copying build/lib.linux-armv7l-3.5/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,412 copying build/lib.linux-armv7l-3.5/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,420 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,423 copying build/lib.linux-armv7l-3.5/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,428 copying build/lib.linux-armv7l-3.5/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,433 copying build/lib.linux-armv7l-3.5/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,436 copying build/lib.linux-armv7l-3.5/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,443 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,452 copying build/lib.linux-armv7l-3.5/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,459 copying build/lib.linux-armv7l-3.5/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,464 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,469 copying build/lib.linux-armv7l-3.5/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,476 copying build/lib.linux-armv7l-3.5/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,480 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,483 copying build/lib.linux-armv7l-3.5/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,487 copying build/lib.linux-armv7l-3.5/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,491 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T17:44:34,496 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,498 copying build/lib.linux-armv7l-3.5/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,503 copying build/lib.linux-armv7l-3.5/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,508 copying build/lib.linux-armv7l-3.5/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,513 copying build/lib.linux-armv7l-3.5/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,518 copying build/lib.linux-armv7l-3.5/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,522 copying build/lib.linux-armv7l-3.5/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,526 copying build/lib.linux-armv7l-3.5/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,530 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,531 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,534 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,539 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,543 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,548 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,556 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,561 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,568 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,572 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,577 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,582 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,585 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,588 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T17:44:34,592 copying build/lib.linux-armv7l-3.5/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,595 copying build/lib.linux-armv7l-3.5/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,600 copying build/lib.linux-armv7l-3.5/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,606 copying build/lib.linux-armv7l-3.5/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,612 copying build/lib.linux-armv7l-3.5/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,618 copying build/lib.linux-armv7l-3.5/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T17:44:34,626 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,628 copying build/lib.linux-armv7l-3.5/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,637 copying build/lib.linux-armv7l-3.5/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,643 copying build/lib.linux-armv7l-3.5/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,647 copying build/lib.linux-armv7l-3.5/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,650 copying build/lib.linux-armv7l-3.5/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,653 copying build/lib.linux-armv7l-3.5/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,657 copying build/lib.linux-armv7l-3.5/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,662 copying build/lib.linux-armv7l-3.5/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,669 copying build/lib.linux-armv7l-3.5/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,675 copying build/lib.linux-armv7l-3.5/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,682 copying build/lib.linux-armv7l-3.5/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T17:44:34,689 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,691 copying build/lib.linux-armv7l-3.5/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,694 copying build/lib.linux-armv7l-3.5/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,698 copying build/lib.linux-armv7l-3.5/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,702 copying build/lib.linux-armv7l-3.5/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,707 copying build/lib.linux-armv7l-3.5/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,711 copying build/lib.linux-armv7l-3.5/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,714 copying build/lib.linux-armv7l-3.5/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,716 copying build/lib.linux-armv7l-3.5/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,721 copying build/lib.linux-armv7l-3.5/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,727 copying build/lib.linux-armv7l-3.5/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,733 copying build/lib.linux-armv7l-3.5/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,739 copying build/lib.linux-armv7l-3.5/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,744 copying build/lib.linux-armv7l-3.5/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,750 copying build/lib.linux-armv7l-3.5/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,753 copying build/lib.linux-armv7l-3.5/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,757 copying build/lib.linux-armv7l-3.5/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,762 copying build/lib.linux-armv7l-3.5/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T17:44:34,768 running install_egg_info 2021-01-09T17:44:34,790 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.2-py3.5.egg-info 2021-01-09T17:44:34,815 running install_scripts 2021-01-09T17:44:34,971 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.2.dist-info/WHEEL 2021-01-09T17:44:36,875 Building wheel for jcvi (setup.py): finished with status 'done' 2021-01-09T17:44:36,897 Created wheel for jcvi: filename=jcvi-1.1.2-cp35-cp35m-linux_armv7l.whl size=1149510 sha256=939184f2b735d0ca56095377c9b8b4583ba3e71d4795e3066876cf7deb8115f6 2021-01-09T17:44:36,898 Stored in directory: /tmp/pip-ephem-wheel-cache-g187m5nz/wheels/dd/71/64/2b1eab7f4dfbcc1a64ef93039c3876902e178be6e5c7740710 2021-01-09T17:44:36,901 Successfully built jcvi 2021-01-09T17:44:37,242 Removed build tracker: '/tmp/pip-req-tracker-86s3h61n'