2021-01-09T20:35:30,287 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-09T20:35:30,948 Created temporary directory: /tmp/pip-ephem-wheel-cache-f31wjm_k 2021-01-09T20:35:30,952 Created temporary directory: /tmp/pip-req-tracker-59e1n26l 2021-01-09T20:35:30,953 Initialized build tracking at /tmp/pip-req-tracker-59e1n26l 2021-01-09T20:35:30,953 Created build tracker: /tmp/pip-req-tracker-59e1n26l 2021-01-09T20:35:30,954 Entered build tracker: /tmp/pip-req-tracker-59e1n26l 2021-01-09T20:35:30,955 Created temporary directory: /tmp/pip-wheel-8xxq1lk7 2021-01-09T20:35:30,970 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2021-01-09T20:35:30,972 2 location(s) to search for versions of jcvi: 2021-01-09T20:35:30,972 * https://pypi.org/simple/jcvi/ 2021-01-09T20:35:30,972 * https://pypi.ngc.nvidia.com/jcvi/ 2021-01-09T20:35:30,973 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-01-09T20:35:30,975 Getting page https://pypi.org/simple/jcvi/ 2021-01-09T20:35:30,978 Found index url https://pypi.org/simple 2021-01-09T20:35:31,596 Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7 2021-01-09T20:35:31,597 Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8 2021-01-09T20:35:31,598 Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-01-09T20:35:31,633 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-01-09T20:35:31,634 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-01-09T20:35:31,634 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-01-09T20:35:31,635 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/jcvi/ 2021-01-09T20:35:31,636 Getting page https://pypi.ngc.nvidia.com/jcvi/ 2021-01-09T20:35:31,638 Found index url https://pypi.ngc.nvidia.com 2021-01-09T20:35:32,472 Could not fetch URL https://pypi.ngc.nvidia.com/jcvi/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/jcvi/ - skipping 2021-01-09T20:35:32,504 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-01-09T20:35:32,507 Using version 1.1.3 (newest of versions: 1.1.3) 2021-01-09T20:35:32,515 Collecting jcvi==1.1.3 2021-01-09T20:35:32,519 Created temporary directory: /tmp/pip-unpack-31h5vafc 2021-01-09T20:35:32,798 Downloading jcvi-1.1.3.tar.gz (820 kB) 2021-01-09T20:35:34,127 Added jcvi==1.1.3 from https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 to build tracker '/tmp/pip-req-tracker-59e1n26l' 2021-01-09T20:35:34,129 Running setup.py (path:/tmp/pip-wheel-8xxq1lk7/jcvi/setup.py) egg_info for package jcvi 2021-01-09T20:35:34,130 Created temporary directory: /tmp/pip-pip-egg-info-boehq_i8 2021-01-09T20:35:34,131 Running command python setup.py egg_info 2021-01-09T20:35:37,573 running egg_info 2021-01-09T20:35:37,577 creating /tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info 2021-01-09T20:35:37,579 writing top-level names to /tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info/top_level.txt 2021-01-09T20:35:37,582 writing requirements to /tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info/requires.txt 2021-01-09T20:35:37,584 writing /tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info/PKG-INFO 2021-01-09T20:35:37,589 writing dependency_links to /tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info/dependency_links.txt 2021-01-09T20:35:37,593 writing manifest file '/tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info/SOURCES.txt' 2021-01-09T20:35:37,686 reading manifest file '/tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info/SOURCES.txt' 2021-01-09T20:35:37,689 reading manifest template 'MANIFEST.in' 2021-01-09T20:35:37,714 writing manifest file '/tmp/pip-pip-egg-info-boehq_i8/jcvi.egg-info/SOURCES.txt' 2021-01-09T20:35:37,716 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.3' to '1.1.3' 2021-01-09T20:35:37,717 warnings.warn(tmpl.format(**locals())) 2021-01-09T20:35:37,923 Source in /tmp/pip-wheel-8xxq1lk7/jcvi has version 1.1.3, which satisfies requirement jcvi==1.1.3 from https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 2021-01-09T20:35:37,924 Removed jcvi==1.1.3 from https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 from build tracker '/tmp/pip-req-tracker-59e1n26l' 2021-01-09T20:35:37,931 Building wheels for collected packages: jcvi 2021-01-09T20:35:37,938 Created temporary directory: /tmp/pip-wheel-ztnuu8pg 2021-01-09T20:35:37,939 Building wheel for jcvi (setup.py): started 2021-01-09T20:35:37,940 Destination directory: /tmp/pip-wheel-ztnuu8pg 2021-01-09T20:35:37,940 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8xxq1lk7/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8xxq1lk7/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ztnuu8pg 2021-01-09T20:35:41,403 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.3' to '1.1.3' 2021-01-09T20:35:41,404 warnings.warn(tmpl.format(**locals())) 2021-01-09T20:35:41,601 running bdist_wheel 2021-01-09T20:35:41,615 running build 2021-01-09T20:35:41,616 running build_py 2021-01-09T20:35:41,626 creating build 2021-01-09T20:35:41,627 creating build/lib.linux-armv7l-3.5 2021-01-09T20:35:41,628 creating build/lib.linux-armv7l-3.5/jcvi 2021-01-09T20:35:41,630 copying jcvi/_version.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T20:35:41,632 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T20:35:41,637 creating build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,638 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,642 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,645 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,648 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,652 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,654 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,658 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,662 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,668 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,673 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,678 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,684 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T20:35:41,690 creating build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,691 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,694 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,698 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,701 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,705 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,712 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,716 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,724 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,728 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,732 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T20:35:41,738 creating build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,739 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,744 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,748 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,752 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,755 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,759 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,763 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,767 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,772 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,779 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,785 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,790 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,792 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,796 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,799 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,803 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,807 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,812 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,816 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,820 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,823 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,827 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,832 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T20:35:41,841 creating build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,844 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,850 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,855 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,859 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,862 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,866 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,870 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,875 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,881 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,886 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,890 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,895 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T20:35:41,902 creating build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,904 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,908 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,914 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,918 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,923 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,927 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,932 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,936 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,940 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,944 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,949 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,955 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,960 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,965 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,970 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,975 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,979 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,984 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,987 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,994 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:41,999 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:42,005 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:42,010 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:42,014 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:42,019 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:42,024 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:42,029 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T20:35:42,042 creating build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,045 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,050 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,056 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,059 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,064 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,067 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,079 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,084 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,089 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,093 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,096 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,099 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,104 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,106 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,109 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,115 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,121 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,126 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,134 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,137 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,144 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,153 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,159 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,166 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,172 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,177 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,184 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,191 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,194 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,197 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,203 creating build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,204 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,208 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,212 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,216 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,219 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,224 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,227 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,232 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,238 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,245 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,253 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,256 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,260 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,265 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,269 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,274 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,283 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,288 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,297 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,307 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,313 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,319 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,326 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,331 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,335 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,338 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,342 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,348 creating build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,350 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,354 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,358 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,361 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,365 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,369 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,376 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,380 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,386 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,393 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,397 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,402 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,407 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T20:35:42,413 creating build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,416 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,424 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,430 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,435 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,438 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,441 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,445 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,449 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,453 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,458 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,466 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T20:35:42,480 creating build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,482 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,488 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,494 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,500 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,506 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,511 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,514 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,519 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,525 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,532 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,539 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,545 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,551 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,559 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,562 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,566 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,569 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T20:35:42,574 creating build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,575 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,578 running egg_info 2021-01-09T20:35:42,595 writing jcvi.egg-info/PKG-INFO 2021-01-09T20:35:42,600 writing top-level names to jcvi.egg-info/top_level.txt 2021-01-09T20:35:42,602 writing requirements to jcvi.egg-info/requires.txt 2021-01-09T20:35:42,604 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-01-09T20:35:42,641 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T20:35:42,653 reading manifest template 'MANIFEST.in' 2021-01-09T20:35:42,686 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T20:35:42,699 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:35:42,703 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:42,707 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,712 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,721 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,726 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,734 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,743 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,749 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,754 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,759 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,763 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,770 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,775 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T20:35:42,807 UPDATING build/lib.linux-armv7l-3.5/jcvi/_version.py 2021-01-09T20:35:42,811 set build/lib.linux-armv7l-3.5/jcvi/_version.py to 'v1.1.3' 2021-01-09T20:35:42,811 running build_ext 2021-01-09T20:35:42,938 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-01-09T20:35:44,294 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-8xxq1lk7/jcvi/jcvi/assembly/chic.pyx 2021-01-09T20:35:44,296 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T20:35:53,279 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-01-09T20:35:53,297 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-8xxq1lk7/jcvi/jcvi/formats/cblast.pyx 2021-01-09T20:35:53,298 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T20:35:56,008 building 'jcvi.assembly.chic' extension 2021-01-09T20:35:56,009 creating build/temp.linux-armv7l-3.5 2021-01-09T20:35:56,010 creating build/temp.linux-armv7l-3.5/jcvi 2021-01-09T20:35:56,011 creating build/temp.linux-armv7l-3.5/jcvi/assembly 2021-01-09T20:35:56,012 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include -I/usr/include/python3.5m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -O3 2021-01-09T20:35:56,542 In file included from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, 2021-01-09T20:35:56,543 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-09T20:35:56,543 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-09T20:35:56,544 from jcvi/assembly/chic.c:610: 2021-01-09T20:35:56,544 /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-09T20:35:56,545 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-09T20:35:56,545 ^~~~~~~ 2021-01-09T20:36:02,801 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T20:36:03,005 building 'jcvi.formats.cblast' extension 2021-01-09T20:36:03,006 creating build/temp.linux-armv7l-3.5/jcvi/formats 2021-01-09T20:36:03,007 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -O3 2021-01-09T20:36:14,310 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T20:36:14,539 installing to build/bdist.linux-armv7l/wheel 2021-01-09T20:36:14,540 running install 2021-01-09T20:36:14,543 running install_lib 2021-01-09T20:36:14,553 creating build/bdist.linux-armv7l 2021-01-09T20:36:14,554 creating build/bdist.linux-armv7l/wheel 2021-01-09T20:36:14,558 creating build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T20:36:14,560 copying build/lib.linux-armv7l-3.5/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T20:36:14,565 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,567 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,573 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,580 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,585 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,591 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,593 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,596 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,600 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,604 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,606 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,610 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,616 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T20:36:14,623 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,625 copying build/lib.linux-armv7l-3.5/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,630 copying build/lib.linux-armv7l-3.5/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,634 copying build/lib.linux-armv7l-3.5/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,637 copying build/lib.linux-armv7l-3.5/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,640 copying build/lib.linux-armv7l-3.5/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,644 copying build/lib.linux-armv7l-3.5/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,647 copying build/lib.linux-armv7l-3.5/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,652 copying build/lib.linux-armv7l-3.5/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,656 copying build/lib.linux-armv7l-3.5/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,659 copying build/lib.linux-armv7l-3.5/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T20:36:14,664 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,665 copying build/lib.linux-armv7l-3.5/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,671 copying build/lib.linux-armv7l-3.5/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,677 copying build/lib.linux-armv7l-3.5/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,683 copying build/lib.linux-armv7l-3.5/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,687 copying build/lib.linux-armv7l-3.5/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,692 copying build/lib.linux-armv7l-3.5/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,695 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,698 copying build/lib.linux-armv7l-3.5/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,701 copying build/lib.linux-armv7l-3.5/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,706 copying build/lib.linux-armv7l-3.5/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,712 copying build/lib.linux-armv7l-3.5/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,718 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,722 copying build/lib.linux-armv7l-3.5/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,729 copying build/lib.linux-armv7l-3.5/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,733 copying build/lib.linux-armv7l-3.5/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,737 copying build/lib.linux-armv7l-3.5/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,742 copying build/lib.linux-armv7l-3.5/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,748 copying build/lib.linux-armv7l-3.5/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,753 copying build/lib.linux-armv7l-3.5/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,760 copying build/lib.linux-armv7l-3.5/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,766 copying build/lib.linux-armv7l-3.5/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,772 copying build/lib.linux-armv7l-3.5/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,775 copying build/lib.linux-armv7l-3.5/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T20:36:14,781 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,782 copying build/lib.linux-armv7l-3.5/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,788 copying build/lib.linux-armv7l-3.5/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,793 copying build/lib.linux-armv7l-3.5/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,799 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,804 copying build/lib.linux-armv7l-3.5/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,811 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,814 copying build/lib.linux-armv7l-3.5/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,818 copying build/lib.linux-armv7l-3.5/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,822 copying build/lib.linux-armv7l-3.5/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,827 copying build/lib.linux-armv7l-3.5/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,831 copying build/lib.linux-armv7l-3.5/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,840 copying build/lib.linux-armv7l-3.5/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T20:36:14,848 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,850 copying build/lib.linux-armv7l-3.5/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,856 copying build/lib.linux-armv7l-3.5/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,863 copying build/lib.linux-armv7l-3.5/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,867 copying build/lib.linux-armv7l-3.5/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,873 copying build/lib.linux-armv7l-3.5/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,879 copying build/lib.linux-armv7l-3.5/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,885 copying build/lib.linux-armv7l-3.5/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,891 copying build/lib.linux-armv7l-3.5/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,897 copying build/lib.linux-armv7l-3.5/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,904 copying build/lib.linux-armv7l-3.5/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,911 copying build/lib.linux-armv7l-3.5/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,917 copying build/lib.linux-armv7l-3.5/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,922 copying build/lib.linux-armv7l-3.5/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,928 copying build/lib.linux-armv7l-3.5/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,934 copying build/lib.linux-armv7l-3.5/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,941 copying build/lib.linux-armv7l-3.5/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,947 copying build/lib.linux-armv7l-3.5/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,955 copying build/lib.linux-armv7l-3.5/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,959 copying build/lib.linux-armv7l-3.5/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,963 copying build/lib.linux-armv7l-3.5/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,967 copying build/lib.linux-armv7l-3.5/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,971 copying build/lib.linux-armv7l-3.5/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,975 copying build/lib.linux-armv7l-3.5/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,980 copying build/lib.linux-armv7l-3.5/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,986 copying build/lib.linux-armv7l-3.5/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,990 copying build/lib.linux-armv7l-3.5/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,994 copying build/lib.linux-armv7l-3.5/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T20:36:14,997 copying build/lib.linux-armv7l-3.5/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T20:36:15,002 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,003 copying build/lib.linux-armv7l-3.5/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,008 copying build/lib.linux-armv7l-3.5/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,013 copying build/lib.linux-armv7l-3.5/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,016 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,020 copying build/lib.linux-armv7l-3.5/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,024 copying build/lib.linux-armv7l-3.5/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,028 copying build/lib.linux-armv7l-3.5/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,036 copying build/lib.linux-armv7l-3.5/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,040 copying build/lib.linux-armv7l-3.5/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,044 copying build/lib.linux-armv7l-3.5/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,048 copying build/lib.linux-armv7l-3.5/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,051 copying build/lib.linux-armv7l-3.5/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,054 copying build/lib.linux-armv7l-3.5/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,060 copying build/lib.linux-armv7l-3.5/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,063 copying build/lib.linux-armv7l-3.5/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,066 copying build/lib.linux-armv7l-3.5/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,070 copying build/lib.linux-armv7l-3.5/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,075 copying build/lib.linux-armv7l-3.5/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,079 copying build/lib.linux-armv7l-3.5/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,086 copying build/lib.linux-armv7l-3.5/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,090 copying build/lib.linux-armv7l-3.5/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,097 copying build/lib.linux-armv7l-3.5/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,105 copying build/lib.linux-armv7l-3.5/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,110 copying build/lib.linux-armv7l-3.5/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,115 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,142 copying build/lib.linux-armv7l-3.5/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,146 copying build/lib.linux-armv7l-3.5/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,151 copying build/lib.linux-armv7l-3.5/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,156 copying build/lib.linux-armv7l-3.5/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,162 copying build/lib.linux-armv7l-3.5/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,166 copying build/lib.linux-armv7l-3.5/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,170 copying build/lib.linux-armv7l-3.5/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T20:36:15,176 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,178 copying build/lib.linux-armv7l-3.5/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,182 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,195 copying build/lib.linux-armv7l-3.5/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,200 copying build/lib.linux-armv7l-3.5/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,205 copying build/lib.linux-armv7l-3.5/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,210 copying build/lib.linux-armv7l-3.5/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,214 copying build/lib.linux-armv7l-3.5/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,218 copying build/lib.linux-armv7l-3.5/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,222 copying build/lib.linux-armv7l-3.5/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,227 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,233 copying build/lib.linux-armv7l-3.5/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,240 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,243 copying build/lib.linux-armv7l-3.5/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,247 copying build/lib.linux-armv7l-3.5/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,254 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,257 copying build/lib.linux-armv7l-3.5/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,261 copying build/lib.linux-armv7l-3.5/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,267 copying build/lib.linux-armv7l-3.5/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,271 copying build/lib.linux-armv7l-3.5/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,276 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,287 copying build/lib.linux-armv7l-3.5/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,293 copying build/lib.linux-armv7l-3.5/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,299 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,303 copying build/lib.linux-armv7l-3.5/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,309 copying build/lib.linux-armv7l-3.5/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,312 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,317 copying build/lib.linux-armv7l-3.5/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,321 copying build/lib.linux-armv7l-3.5/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,327 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T20:36:15,333 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,335 copying build/lib.linux-armv7l-3.5/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,341 copying build/lib.linux-armv7l-3.5/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,347 copying build/lib.linux-armv7l-3.5/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,353 copying build/lib.linux-armv7l-3.5/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,358 copying build/lib.linux-armv7l-3.5/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,363 copying build/lib.linux-armv7l-3.5/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,369 copying build/lib.linux-armv7l-3.5/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,373 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,374 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,377 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,382 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,386 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,391 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,399 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,402 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,407 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,409 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,412 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,416 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,419 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,422 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T20:36:15,426 copying build/lib.linux-armv7l-3.5/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,430 copying build/lib.linux-armv7l-3.5/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,433 copying build/lib.linux-armv7l-3.5/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,436 copying build/lib.linux-armv7l-3.5/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,440 copying build/lib.linux-armv7l-3.5/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,444 copying build/lib.linux-armv7l-3.5/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T20:36:15,453 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,456 copying build/lib.linux-armv7l-3.5/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,465 copying build/lib.linux-armv7l-3.5/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,472 copying build/lib.linux-armv7l-3.5/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,481 copying build/lib.linux-armv7l-3.5/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,487 copying build/lib.linux-armv7l-3.5/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,491 copying build/lib.linux-armv7l-3.5/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,495 copying build/lib.linux-armv7l-3.5/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,500 copying build/lib.linux-armv7l-3.5/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,508 copying build/lib.linux-armv7l-3.5/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,516 copying build/lib.linux-armv7l-3.5/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,525 copying build/lib.linux-armv7l-3.5/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T20:36:15,533 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,534 copying build/lib.linux-armv7l-3.5/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,539 copying build/lib.linux-armv7l-3.5/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,545 copying build/lib.linux-armv7l-3.5/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,553 copying build/lib.linux-armv7l-3.5/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,561 copying build/lib.linux-armv7l-3.5/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,568 copying build/lib.linux-armv7l-3.5/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,573 copying build/lib.linux-armv7l-3.5/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,578 copying build/lib.linux-armv7l-3.5/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,584 copying build/lib.linux-armv7l-3.5/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,591 copying build/lib.linux-armv7l-3.5/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,598 copying build/lib.linux-armv7l-3.5/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,604 copying build/lib.linux-armv7l-3.5/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,609 copying build/lib.linux-armv7l-3.5/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,741 copying build/lib.linux-armv7l-3.5/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,747 copying build/lib.linux-armv7l-3.5/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,753 copying build/lib.linux-armv7l-3.5/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,759 copying build/lib.linux-armv7l-3.5/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T20:36:15,766 running install_egg_info 2021-01-09T20:36:15,793 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.3-py3.5.egg-info 2021-01-09T20:36:15,817 running install_scripts 2021-01-09T20:36:15,979 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.3.dist-info/WHEEL 2021-01-09T20:36:18,134 Building wheel for jcvi (setup.py): finished with status 'done' 2021-01-09T20:36:18,155 Created wheel for jcvi: filename=jcvi-1.1.3-cp35-cp35m-linux_armv7l.whl size=1147016 sha256=2a15f14a51ba06fe4a91e1c0408b08bd29662f1ad276972f8f3c462528d6dee5 2021-01-09T20:36:18,156 Stored in directory: /tmp/pip-ephem-wheel-cache-f31wjm_k/wheels/b0/6e/7e/af8d8d3f9af53ef15607147c8c3b6712a6ea433b2591192b83 2021-01-09T20:36:18,160 Successfully built jcvi 2021-01-09T20:36:19,514 Removed build tracker: '/tmp/pip-req-tracker-59e1n26l'