2021-01-09T21:29:43,071 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-09T21:29:43,849 Created temporary directory: /tmp/pip-ephem-wheel-cache-ubzwqn3f 2021-01-09T21:29:43,854 Created temporary directory: /tmp/pip-req-tracker-83jh2jny 2021-01-09T21:29:43,855 Initialized build tracking at /tmp/pip-req-tracker-83jh2jny 2021-01-09T21:29:43,855 Created build tracker: /tmp/pip-req-tracker-83jh2jny 2021-01-09T21:29:43,855 Entered build tracker: /tmp/pip-req-tracker-83jh2jny 2021-01-09T21:29:43,857 Created temporary directory: /tmp/pip-wheel-s1fax0j7 2021-01-09T21:29:43,878 1 location(s) to search for versions of jcvi: 2021-01-09T21:29:43,878 * https://pypi.org/simple/jcvi/ 2021-01-09T21:29:43,878 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-01-09T21:29:43,881 Getting page https://pypi.org/simple/jcvi/ 2021-01-09T21:29:43,885 Found index url 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-01-09T21:29:44,721 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-01-09T21:29:44,722 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-01-09T21:29:44,723 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-01-09T21:29:44,724 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-01-09T21:29:44,756 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-01-09T21:29:44,759 Using version 1.1.4 (newest of versions: 1.1.4) 2021-01-09T21:29:44,768 Collecting jcvi==1.1.4 2021-01-09T21:29:44,773 Created temporary directory: /tmp/pip-unpack-1_dbldux 2021-01-09T21:29:45,054 Downloading jcvi-1.1.4.tar.gz (820 kB) 2021-01-09T21:29:47,233 Added jcvi==1.1.4 from https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 to build tracker '/tmp/pip-req-tracker-83jh2jny' 2021-01-09T21:29:47,235 Running setup.py (path:/tmp/pip-wheel-s1fax0j7/jcvi/setup.py) egg_info for package jcvi 2021-01-09T21:29:47,238 Created temporary directory: /tmp/pip-pip-egg-info-4w9cvtqp 2021-01-09T21:29:47,239 Running command python setup.py egg_info 2021-01-09T21:29:51,365 running egg_info 2021-01-09T21:29:51,373 creating /tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info 2021-01-09T21:29:51,377 writing requirements to /tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info/requires.txt 2021-01-09T21:29:51,380 writing top-level names to /tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info/top_level.txt 2021-01-09T21:29:51,383 writing dependency_links to /tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info/dependency_links.txt 2021-01-09T21:29:51,386 writing /tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info/PKG-INFO 2021-01-09T21:29:51,396 writing manifest file '/tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info/SOURCES.txt' 2021-01-09T21:29:51,453 reading manifest file '/tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info/SOURCES.txt' 2021-01-09T21:29:51,456 reading manifest template 'MANIFEST.in' 2021-01-09T21:29:51,485 writing manifest file '/tmp/pip-pip-egg-info-4w9cvtqp/jcvi.egg-info/SOURCES.txt' 2021-01-09T21:29:51,488 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.4' to '1.1.4' 2021-01-09T21:29:51,489 warnings.warn(tmpl.format(**locals())) 2021-01-09T21:29:51,717 Source in /tmp/pip-wheel-s1fax0j7/jcvi has version 1.1.4, which satisfies requirement jcvi==1.1.4 from https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 2021-01-09T21:29:51,718 Removed jcvi==1.1.4 from https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 from build tracker '/tmp/pip-req-tracker-83jh2jny' 2021-01-09T21:29:51,725 Building wheels for collected packages: jcvi 2021-01-09T21:29:51,734 Created temporary directory: /tmp/pip-wheel-08la7u2a 2021-01-09T21:29:51,735 Building wheel for jcvi (setup.py): started 2021-01-09T21:29:51,736 Destination directory: /tmp/pip-wheel-08la7u2a 2021-01-09T21:29:51,736 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-s1fax0j7/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-s1fax0j7/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-08la7u2a 2021-01-09T21:29:55,530 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:458: UserWarning: Normalizing 'v1.1.4' to '1.1.4' 2021-01-09T21:29:55,533 warnings.warn(tmpl.format(**locals())) 2021-01-09T21:29:55,759 running bdist_wheel 2021-01-09T21:29:55,772 running build 2021-01-09T21:29:55,772 running build_py 2021-01-09T21:29:55,785 creating build 2021-01-09T21:29:55,786 creating build/lib.linux-armv7l-3.5 2021-01-09T21:29:55,788 creating build/lib.linux-armv7l-3.5/jcvi 2021-01-09T21:29:55,792 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T21:29:55,797 copying jcvi/_version.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-09T21:29:55,809 creating build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,812 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,819 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,827 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,834 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,841 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,850 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,859 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,867 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,876 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,883 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,888 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,895 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,905 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,913 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,921 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,931 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,939 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,950 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,957 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,965 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,971 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,979 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,986 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-09T21:29:55,994 creating build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:55,996 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,002 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,008 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,016 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,021 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,028 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,033 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,040 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,048 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,054 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,062 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,069 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,075 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,084 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-09T21:29:56,098 creating build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,101 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,107 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,115 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,121 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,127 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,140 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,155 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,167 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,179 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,191 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,200 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,209 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,228 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,238 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,246 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,262 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,268 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,279 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,289 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,297 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,304 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,311 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,320 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,331 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,341 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,350 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,358 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,366 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,376 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,383 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:56,396 creating build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,398 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,404 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,412 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,416 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,426 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,440 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,449 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,458 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,466 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,472 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,481 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,486 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,493 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,504 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,514 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,522 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,531 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,539 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,547 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,559 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,566 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,574 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,581 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,586 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,590 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,596 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,603 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:56,620 creating build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,623 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,631 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,636 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,645 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,656 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,670 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,677 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,686 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,694 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,700 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,710 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,719 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,728 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,736 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,746 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,755 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,763 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-09T21:29:56,772 creating build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,775 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,781 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,789 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,803 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,810 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,816 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,820 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,832 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,842 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,853 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,864 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-09T21:29:56,882 creating build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,886 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,893 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,898 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,904 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,915 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,923 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,931 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,940 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,946 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,953 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,960 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,965 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,972 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,987 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:56,995 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,002 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,012 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,020 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,026 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,034 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,041 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,051 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,058 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,066 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,072 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,080 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,089 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-09T21:29:57,101 creating build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,104 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,113 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,120 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,131 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,139 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,146 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,156 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,166 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,175 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,185 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,321 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,329 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-09T21:29:57,342 creating build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,345 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,351 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,358 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,363 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,368 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,376 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,382 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,388 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,402 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,412 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,424 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,436 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-09T21:29:57,452 creating build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:57,456 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:57,466 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:57,474 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:57,486 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:57,495 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:57,508 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:57,519 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:58,639 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:58,644 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:58,650 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-09T21:29:58,656 creating build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,658 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,661 running egg_info 2021-01-09T21:29:58,684 writing top-level names to jcvi.egg-info/top_level.txt 2021-01-09T21:29:58,686 writing jcvi.egg-info/PKG-INFO 2021-01-09T21:29:58,693 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-01-09T21:29:58,698 writing requirements to jcvi.egg-info/requires.txt 2021-01-09T21:29:58,750 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T21:29:58,771 reading manifest template 'MANIFEST.in' 2021-01-09T21:29:58,809 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-09T21:29:58,826 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:29:58,833 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:29:58,838 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,846 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,862 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,873 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,883 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,893 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,898 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,903 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,912 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,923 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,938 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,950 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-09T21:29:58,993 UPDATING build/lib.linux-armv7l-3.5/jcvi/_version.py 2021-01-09T21:29:58,997 set build/lib.linux-armv7l-3.5/jcvi/_version.py to 'v1.1.4' 2021-01-09T21:29:58,998 running build_ext 2021-01-09T21:29:59,158 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-01-09T21:30:00,778 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-s1fax0j7/jcvi/jcvi/assembly/chic.pyx 2021-01-09T21:30:00,778 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T21:30:11,403 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-01-09T21:30:11,429 /home/piwheels/.local/lib/python3.5/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-s1fax0j7/jcvi/jcvi/formats/cblast.pyx 2021-01-09T21:30:11,430 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-09T21:30:14,597 building 'jcvi.assembly.chic' extension 2021-01-09T21:30:14,598 creating build/temp.linux-armv7l-3.5 2021-01-09T21:30:14,599 creating build/temp.linux-armv7l-3.5/jcvi 2021-01-09T21:30:14,602 creating build/temp.linux-armv7l-3.5/jcvi/assembly 2021-01-09T21:30:14,603 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include -I/usr/include/python3.5m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -O3 2021-01-09T21:30:15,248 In file included from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, 2021-01-09T21:30:15,249 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-09T21:30:15,250 from /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-09T21:30:15,250 from jcvi/assembly/chic.c:610: 2021-01-09T21:30:15,251 /home/piwheels/.local/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-09T21:30:15,252 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-09T21:30:15,252 ^~~~~~~ 2021-01-09T21:30:22,459 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T21:30:22,701 building 'jcvi.formats.cblast' extension 2021-01-09T21:30:22,703 creating build/temp.linux-armv7l-3.5/jcvi/formats 2021-01-09T21:30:22,704 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -O3 2021-01-09T21:30:35,678 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so 2021-01-09T21:30:35,965 installing to build/bdist.linux-armv7l/wheel 2021-01-09T21:30:35,965 running install 2021-01-09T21:30:35,967 running install_lib 2021-01-09T21:30:35,976 creating build/bdist.linux-armv7l 2021-01-09T21:30:35,977 creating build/bdist.linux-armv7l/wheel 2021-01-09T21:30:35,981 creating build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T21:30:35,985 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:35,987 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:35,992 copying build/lib.linux-armv7l-3.5/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:35,998 copying build/lib.linux-armv7l-3.5/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,003 copying build/lib.linux-armv7l-3.5/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,011 copying build/lib.linux-armv7l-3.5/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,020 copying build/lib.linux-armv7l-3.5/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,029 copying build/lib.linux-armv7l-3.5/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,037 copying build/lib.linux-armv7l-3.5/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,045 copying build/lib.linux-armv7l-3.5/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,051 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,056 copying build/lib.linux-armv7l-3.5/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,061 copying build/lib.linux-armv7l-3.5/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,071 copying build/lib.linux-armv7l-3.5/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,078 copying build/lib.linux-armv7l-3.5/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,083 copying build/lib.linux-armv7l-3.5/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,091 copying build/lib.linux-armv7l-3.5/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,098 copying build/lib.linux-armv7l-3.5/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,107 copying build/lib.linux-armv7l-3.5/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,112 copying build/lib.linux-armv7l-3.5/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,118 copying build/lib.linux-armv7l-3.5/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,123 copying build/lib.linux-armv7l-3.5/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,131 copying build/lib.linux-armv7l-3.5/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,137 copying build/lib.linux-armv7l-3.5/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-09T21:30:36,148 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,153 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,156 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,164 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,170 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,176 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,183 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,190 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,199 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,208 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,213 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,224 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,229 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,239 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,246 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-09T21:30:36,263 copying build/lib.linux-armv7l-3.5/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,270 copying build/lib.linux-armv7l-3.5/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,276 copying build/lib.linux-armv7l-3.5/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,285 copying build/lib.linux-armv7l-3.5/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,291 copying build/lib.linux-armv7l-3.5/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,298 copying build/lib.linux-armv7l-3.5/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,304 copying build/lib.linux-armv7l-3.5/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,313 copying build/lib.linux-armv7l-3.5/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,322 copying build/lib.linux-armv7l-3.5/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,331 copying build/lib.linux-armv7l-3.5/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,341 copying build/lib.linux-armv7l-3.5/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,349 copying build/lib.linux-armv7l-3.5/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,356 copying build/lib.linux-armv7l-3.5/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,364 copying build/lib.linux-armv7l-3.5/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-09T21:30:36,373 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,376 copying build/lib.linux-armv7l-3.5/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,382 copying build/lib.linux-armv7l-3.5/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,391 copying build/lib.linux-armv7l-3.5/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,398 copying build/lib.linux-armv7l-3.5/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,405 copying build/lib.linux-armv7l-3.5/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,419 copying build/lib.linux-armv7l-3.5/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,433 copying build/lib.linux-armv7l-3.5/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,444 copying build/lib.linux-armv7l-3.5/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,453 copying build/lib.linux-armv7l-3.5/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,464 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,511 copying build/lib.linux-armv7l-3.5/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,517 copying build/lib.linux-armv7l-3.5/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,525 copying build/lib.linux-armv7l-3.5/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,541 copying build/lib.linux-armv7l-3.5/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,547 copying build/lib.linux-armv7l-3.5/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,552 copying build/lib.linux-armv7l-3.5/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,566 copying build/lib.linux-armv7l-3.5/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,572 copying build/lib.linux-armv7l-3.5/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,582 copying build/lib.linux-armv7l-3.5/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,591 copying build/lib.linux-armv7l-3.5/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,598 copying build/lib.linux-armv7l-3.5/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,603 copying build/lib.linux-armv7l-3.5/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,607 copying build/lib.linux-armv7l-3.5/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,613 copying build/lib.linux-armv7l-3.5/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,619 copying build/lib.linux-armv7l-3.5/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,626 copying build/lib.linux-armv7l-3.5/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,633 copying build/lib.linux-armv7l-3.5/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,638 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,644 copying build/lib.linux-armv7l-3.5/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,649 copying build/lib.linux-armv7l-3.5/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,655 copying build/lib.linux-armv7l-3.5/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,661 copying build/lib.linux-armv7l-3.5/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-09T21:30:36,671 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,674 copying build/lib.linux-armv7l-3.5/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,680 copying build/lib.linux-armv7l-3.5/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,687 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,692 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,698 copying build/lib.linux-armv7l-3.5/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,709 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,721 copying build/lib.linux-armv7l-3.5/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,729 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,736 copying build/lib.linux-armv7l-3.5/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,745 copying build/lib.linux-armv7l-3.5/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,751 copying build/lib.linux-armv7l-3.5/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,760 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,764 copying build/lib.linux-armv7l-3.5/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,770 copying build/lib.linux-armv7l-3.5/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,776 copying build/lib.linux-armv7l-3.5/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,784 copying build/lib.linux-armv7l-3.5/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,793 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,801 copying build/lib.linux-armv7l-3.5/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,807 copying build/lib.linux-armv7l-3.5/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,814 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,838 copying build/lib.linux-armv7l-3.5/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,850 copying build/lib.linux-armv7l-3.5/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,857 copying build/lib.linux-armv7l-3.5/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,864 copying build/lib.linux-armv7l-3.5/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,869 copying build/lib.linux-armv7l-3.5/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,875 copying build/lib.linux-armv7l-3.5/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,879 copying build/lib.linux-armv7l-3.5/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,886 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,893 copying build/lib.linux-armv7l-3.5/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-09T21:30:36,905 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,908 copying build/lib.linux-armv7l-3.5/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,917 copying build/lib.linux-armv7l-3.5/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,923 copying build/lib.linux-armv7l-3.5/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,932 copying build/lib.linux-armv7l-3.5/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,942 copying build/lib.linux-armv7l-3.5/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,956 copying build/lib.linux-armv7l-3.5/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,963 copying build/lib.linux-armv7l-3.5/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,971 copying build/lib.linux-armv7l-3.5/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,977 copying build/lib.linux-armv7l-3.5/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,981 copying build/lib.linux-armv7l-3.5/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,991 copying build/lib.linux-armv7l-3.5/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:36,998 copying build/lib.linux-armv7l-3.5/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:37,006 copying build/lib.linux-armv7l-3.5/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:37,012 copying build/lib.linux-armv7l-3.5/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:37,020 copying build/lib.linux-armv7l-3.5/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:37,029 copying build/lib.linux-armv7l-3.5/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:37,037 copying build/lib.linux-armv7l-3.5/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-09T21:30:37,046 copying build/lib.linux-armv7l-3.5/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T21:30:37,056 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,059 copying build/lib.linux-armv7l-3.5/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,066 copying build/lib.linux-armv7l-3.5/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,073 copying build/lib.linux-armv7l-3.5/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,086 copying build/lib.linux-armv7l-3.5/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,095 copying build/lib.linux-armv7l-3.5/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,102 copying build/lib.linux-armv7l-3.5/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,108 copying build/lib.linux-armv7l-3.5/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,117 copying build/lib.linux-armv7l-3.5/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,125 copying build/lib.linux-armv7l-3.5/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,132 copying build/lib.linux-armv7l-3.5/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,140 copying build/lib.linux-armv7l-3.5/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-09T21:30:37,152 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,156 copying build/lib.linux-armv7l-3.5/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,165 copying build/lib.linux-armv7l-3.5/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,171 copying build/lib.linux-armv7l-3.5/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,177 copying build/lib.linux-armv7l-3.5/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,184 copying build/lib.linux-armv7l-3.5/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,191 copying build/lib.linux-armv7l-3.5/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,201 copying build/lib.linux-armv7l-3.5/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,211 copying build/lib.linux-armv7l-3.5/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,217 copying build/lib.linux-armv7l-3.5/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,224 copying build/lib.linux-armv7l-3.5/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,232 copying build/lib.linux-armv7l-3.5/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,239 copying build/lib.linux-armv7l-3.5/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,248 copying build/lib.linux-armv7l-3.5/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,261 copying build/lib.linux-armv7l-3.5/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,268 copying build/lib.linux-armv7l-3.5/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,274 copying build/lib.linux-armv7l-3.5/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,285 copying build/lib.linux-armv7l-3.5/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,293 copying build/lib.linux-armv7l-3.5/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,298 copying build/lib.linux-armv7l-3.5/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,304 copying build/lib.linux-armv7l-3.5/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,309 copying build/lib.linux-armv7l-3.5/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,318 copying build/lib.linux-armv7l-3.5/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,324 copying build/lib.linux-armv7l-3.5/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,331 copying build/lib.linux-armv7l-3.5/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,337 copying build/lib.linux-armv7l-3.5/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,345 copying build/lib.linux-armv7l-3.5/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,355 copying build/lib.linux-armv7l-3.5/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-09T21:30:37,363 copying build/lib.linux-armv7l-3.5/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-09T21:30:37,372 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,375 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,383 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,390 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,396 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,401 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,406 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,411 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,418 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,424 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,432 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,438 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,445 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-09T21:30:37,454 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,457 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,464 copying build/lib.linux-armv7l-3.5/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,473 copying build/lib.linux-armv7l-3.5/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,481 copying build/lib.linux-armv7l-3.5/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,489 copying build/lib.linux-armv7l-3.5/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,499 copying build/lib.linux-armv7l-3.5/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,507 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,514 copying build/lib.linux-armv7l-3.5/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,524 copying build/lib.linux-armv7l-3.5/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,531 copying build/lib.linux-armv7l-3.5/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,540 copying build/lib.linux-armv7l-3.5/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,548 copying build/lib.linux-armv7l-3.5/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-09T21:30:37,559 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,561 copying build/lib.linux-armv7l-3.5/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,570 copying build/lib.linux-armv7l-3.5/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,576 copying build/lib.linux-armv7l-3.5/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,585 copying build/lib.linux-armv7l-3.5/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,592 copying build/lib.linux-armv7l-3.5/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,604 copying build/lib.linux-armv7l-3.5/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,615 copying build/lib.linux-armv7l-3.5/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,622 copying build/lib.linux-armv7l-3.5/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,627 copying build/lib.linux-armv7l-3.5/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,634 copying build/lib.linux-armv7l-3.5/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-09T21:30:37,641 running install_egg_info 2021-01-09T21:30:37,669 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.4-py3.5.egg-info 2021-01-09T21:30:37,711 running install_scripts 2021-01-09T21:30:37,902 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.4.dist-info/WHEEL 2021-01-09T21:30:40,251 Building wheel for jcvi (setup.py): finished with status 'done' 2021-01-09T21:30:40,278 Created wheel for jcvi: filename=jcvi-1.1.4-cp35-cp35m-linux_armv7l.whl size=1147323 sha256=a3023c6a89d0573d00c4c772d329be65759dba2ea006c3f5be6ce9e05abc6d7f 2021-01-09T21:30:40,279 Stored in directory: /tmp/pip-ephem-wheel-cache-ubzwqn3f/wheels/90/97/e1/d0147e463cee1be2e25980564e266c7c18627d69eb4d58038f 2021-01-09T21:30:40,283 Successfully built jcvi 2021-01-09T21:30:40,490 Removed build tracker: '/tmp/pip-req-tracker-83jh2jny'