2021-01-11T02:46:25,707 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-11T02:46:26,400 Created temporary directory: /tmp/pip-ephem-wheel-cache-9om5wh5a 2021-01-11T02:46:26,405 Created temporary directory: /tmp/pip-req-tracker-178ceg1x 2021-01-11T02:46:26,406 Initialized build tracking at /tmp/pip-req-tracker-178ceg1x 2021-01-11T02:46:26,406 Created build tracker: /tmp/pip-req-tracker-178ceg1x 2021-01-11T02:46:26,407 Entered build tracker: /tmp/pip-req-tracker-178ceg1x 2021-01-11T02:46:26,408 Created temporary directory: /tmp/pip-wheel-vt9qth79 2021-01-11T02:46:26,427 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2021-01-11T02:46:26,429 2 location(s) to search for versions of jcvi: 2021-01-11T02:46:26,429 * https://pypi.org/simple/jcvi/ 2021-01-11T02:46:26,429 * https://pypi.ngc.nvidia.com/jcvi/ 2021-01-11T02:46:26,430 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-01-11T02:46:26,432 Getting page https://pypi.org/simple/jcvi/ 2021-01-11T02:46:26,436 Found index url https://pypi.org/simple 2021-01-11T02:46:27,134 Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7 2021-01-11T02:46:27,135 Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8 2021-01-11T02:46:27,136 Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-01-11T02:46:27,176 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-01-11T02:46:27,177 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-01-11T02:46:27,177 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-01-11T02:46:27,178 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-01-11T02:46:27,179 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-01-11T02:46:27,180 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/jcvi/ 2021-01-11T02:46:27,181 Getting page https://pypi.ngc.nvidia.com/jcvi/ 2021-01-11T02:46:27,184 Found index url https://pypi.ngc.nvidia.com 2021-01-11T02:46:28,189 Could not fetch URL https://pypi.ngc.nvidia.com/jcvi/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/jcvi/ - skipping 2021-01-11T02:46:28,229 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-01-11T02:46:28,232 Using version 1.1.5 (newest of versions: 1.1.5) 2021-01-11T02:46:28,241 Collecting jcvi==1.1.5 2021-01-11T02:46:28,246 Created temporary directory: /tmp/pip-unpack-m3n7xdms 2021-01-11T02:46:28,498 Downloading jcvi-1.1.5.tar.gz (821 kB) 2021-01-11T02:46:30,393 Added jcvi==1.1.5 from https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b to build tracker '/tmp/pip-req-tracker-178ceg1x' 2021-01-11T02:46:30,396 Running setup.py (path:/tmp/pip-wheel-vt9qth79/jcvi/setup.py) egg_info for package jcvi 2021-01-11T02:46:30,397 Created temporary directory: /tmp/pip-pip-egg-info-it3_fnq7 2021-01-11T02:46:30,398 Running command python setup.py egg_info 2021-01-11T02:46:34,425 running egg_info 2021-01-11T02:46:34,430 creating /tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info 2021-01-11T02:46:34,432 writing top-level names to /tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info/top_level.txt 2021-01-11T02:46:34,436 writing requirements to /tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info/requires.txt 2021-01-11T02:46:34,439 writing dependency_links to /tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info/dependency_links.txt 2021-01-11T02:46:34,442 writing /tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info/PKG-INFO 2021-01-11T02:46:34,451 writing manifest file '/tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info/SOURCES.txt' 2021-01-11T02:46:34,501 reading manifest file '/tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info/SOURCES.txt' 2021-01-11T02:46:34,504 reading manifest template 'MANIFEST.in' 2021-01-11T02:46:34,533 writing manifest file '/tmp/pip-pip-egg-info-it3_fnq7/jcvi.egg-info/SOURCES.txt' 2021-01-11T02:46:34,536 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.1.5' to '1.1.5' 2021-01-11T02:46:34,537 warnings.warn(tmpl.format(**locals())) 2021-01-11T02:46:34,758 Source in /tmp/pip-wheel-vt9qth79/jcvi has version 1.1.5, which satisfies requirement jcvi==1.1.5 from https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b 2021-01-11T02:46:34,760 Removed jcvi==1.1.5 from https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b from build tracker '/tmp/pip-req-tracker-178ceg1x' 2021-01-11T02:46:34,773 Building wheels for collected packages: jcvi 2021-01-11T02:46:34,785 Created temporary directory: /tmp/pip-wheel-eie40u98 2021-01-11T02:46:34,786 Building wheel for jcvi (setup.py): started 2021-01-11T02:46:34,787 Destination directory: /tmp/pip-wheel-eie40u98 2021-01-11T02:46:34,787 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vt9qth79/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vt9qth79/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-eie40u98 2021-01-11T02:46:38,323 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.1.5' to '1.1.5' 2021-01-11T02:46:38,324 warnings.warn(tmpl.format(**locals())) 2021-01-11T02:46:38,500 running bdist_wheel 2021-01-11T02:46:38,511 running build 2021-01-11T02:46:38,512 running build_py 2021-01-11T02:46:38,524 creating build 2021-01-11T02:46:38,525 creating build/lib.linux-armv7l-3.5 2021-01-11T02:46:38,526 creating build/lib.linux-armv7l-3.5/jcvi 2021-01-11T02:46:38,529 copying jcvi/_version.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-11T02:46:38,533 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.5/jcvi 2021-01-11T02:46:38,539 creating build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,541 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,548 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,554 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,562 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,569 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,576 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,580 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,586 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,592 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,596 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,608 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2021-01-11T02:46:38,615 creating build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,617 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,623 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,628 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,636 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,645 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,651 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,657 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,666 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,671 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,676 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,682 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,687 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,695 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,701 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,710 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,717 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,726 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,730 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,740 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,744 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,749 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,756 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,763 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,770 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,776 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,782 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,788 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2021-01-11T02:46:38,801 creating build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,804 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,810 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,815 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,819 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,824 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,831 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,837 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,844 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,856 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,862 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,867 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,873 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,885 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,902 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,912 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,920 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,927 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,934 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,940 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,946 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,953 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,966 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,975 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,982 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,988 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:38,993 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:39,002 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:39,011 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:39,016 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:39,022 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:39,031 creating build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,033 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,039 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,045 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,050 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,056 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,063 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,069 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,077 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,085 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,089 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,099 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,105 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2021-01-11T02:46:39,116 creating build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,119 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,126 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,131 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,137 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,142 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,147 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,152 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,161 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,169 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,175 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,179 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,187 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2021-01-11T02:46:39,196 creating build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,199 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,210 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,217 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,225 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,233 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,238 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,243 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,248 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,258 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,264 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2021-01-11T02:46:39,274 creating build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,276 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,283 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,288 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,293 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,298 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,305 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,311 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,316 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,323 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,330 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,335 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,343 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,350 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,355 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2021-01-11T02:46:39,367 creating build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,370 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,376 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,381 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,387 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,393 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,401 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,409 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,416 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,425 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,433 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,441 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,447 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,454 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,459 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,465 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,472 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,478 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,483 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,491 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,498 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,504 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,512 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,520 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2021-01-11T02:46:39,532 creating build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,535 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,541 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,546 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,551 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,557 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,565 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,577 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,583 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,592 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,599 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,605 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,615 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,622 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,629 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,636 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,643 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,650 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,658 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,665 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,670 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,680 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,686 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,692 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,698 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,708 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,713 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,718 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:39,735 creating build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,738 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,744 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,756 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,764 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,770 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,778 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,785 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,792 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,800 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,806 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,814 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,820 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,828 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,833 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,840 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,845 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,853 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2021-01-11T02:46:39,863 creating build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:39,865 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:39,870 running egg_info 2021-01-11T02:46:39,898 writing requirements to jcvi.egg-info/requires.txt 2021-01-11T02:46:39,901 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-01-11T02:46:39,904 writing jcvi.egg-info/PKG-INFO 2021-01-11T02:46:39,909 writing top-level names to jcvi.egg-info/top_level.txt 2021-01-11T02:46:39,956 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-11T02:46:39,975 reading manifest template 'MANIFEST.in' 2021-01-11T02:46:40,015 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-01-11T02:46:40,032 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:40,038 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:40,043 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,050 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,067 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,076 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,086 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,096 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,102 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,109 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,117 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,123 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,135 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,143 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2021-01-11T02:46:40,190 UPDATING build/lib.linux-armv7l-3.5/jcvi/_version.py 2021-01-11T02:46:40,193 set build/lib.linux-armv7l-3.5/jcvi/_version.py to 'v1.1.5' 2021-01-11T02:46:40,194 running build_ext 2021-01-11T02:46:40,387 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-01-11T02:46:42,735 /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vt9qth79/jcvi/jcvi/assembly/chic.pyx 2021-01-11T02:46:42,737 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-11T02:46:47,672 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-01-11T02:46:47,693 /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vt9qth79/jcvi/jcvi/formats/cblast.pyx 2021-01-11T02:46:47,694 tree = Parsing.p_module(s, pxd, full_module_name) 2021-01-11T02:46:49,437 building 'jcvi.assembly.chic' extension 2021-01-11T02:46:49,438 creating build/temp.linux-armv7l-3.5 2021-01-11T02:46:49,439 creating build/temp.linux-armv7l-3.5/jcvi 2021-01-11T02:46:49,441 creating build/temp.linux-armv7l-3.5/jcvi/assembly 2021-01-11T02:46:49,443 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -O3 2021-01-11T02:46:50,140 In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, 2021-01-11T02:46:50,141 from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-11T02:46:50,142 from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-11T02:46:50,143 from jcvi/assembly/chic.c:610: 2021-01-11T02:46:50,143 /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-11T02:46:50,144 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-11T02:46:50,145 ^~~~~~~ 2021-01-11T02:46:57,331 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so 2021-01-11T02:46:57,573 building 'jcvi.formats.cblast' extension 2021-01-11T02:46:57,575 creating build/temp.linux-armv7l-3.5/jcvi/formats 2021-01-11T02:46:57,576 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -O3 2021-01-11T02:47:10,607 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so 2021-01-11T02:47:10,890 installing to build/bdist.linux-armv7l/wheel 2021-01-11T02:47:10,891 running install 2021-01-11T02:47:10,893 running install_lib 2021-01-11T02:47:10,901 creating build/bdist.linux-armv7l 2021-01-11T02:47:10,902 creating build/bdist.linux-armv7l/wheel 2021-01-11T02:47:10,906 creating build/bdist.linux-armv7l/wheel/jcvi 2021-01-11T02:47:10,909 copying build/lib.linux-armv7l-3.5/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-11T02:47:10,915 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,917 copying build/lib.linux-armv7l-3.5/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,923 copying build/lib.linux-armv7l-3.5/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,928 copying build/lib.linux-armv7l-3.5/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,935 copying build/lib.linux-armv7l-3.5/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,944 copying build/lib.linux-armv7l-3.5/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,952 copying build/lib.linux-armv7l-3.5/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,958 copying build/lib.linux-armv7l-3.5/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,965 copying build/lib.linux-armv7l-3.5/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,972 copying build/lib.linux-armv7l-3.5/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,976 copying build/lib.linux-armv7l-3.5/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,989 copying build/lib.linux-armv7l-3.5/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-01-11T02:47:10,997 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:10,1000 copying build/lib.linux-armv7l-3.5/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,007 copying build/lib.linux-armv7l-3.5/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,013 copying build/lib.linux-armv7l-3.5/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,020 copying build/lib.linux-armv7l-3.5/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,030 copying build/lib.linux-armv7l-3.5/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,036 copying build/lib.linux-armv7l-3.5/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,042 copying build/lib.linux-armv7l-3.5/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,050 copying build/lib.linux-armv7l-3.5/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,057 copying build/lib.linux-armv7l-3.5/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,064 copying build/lib.linux-armv7l-3.5/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,072 copying build/lib.linux-armv7l-3.5/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,078 copying build/lib.linux-armv7l-3.5/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,086 copying build/lib.linux-armv7l-3.5/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,093 copying build/lib.linux-armv7l-3.5/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,102 copying build/lib.linux-armv7l-3.5/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,109 copying build/lib.linux-armv7l-3.5/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,118 copying build/lib.linux-armv7l-3.5/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,123 copying build/lib.linux-armv7l-3.5/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,135 copying build/lib.linux-armv7l-3.5/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,141 copying build/lib.linux-armv7l-3.5/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,147 copying build/lib.linux-armv7l-3.5/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,154 copying build/lib.linux-armv7l-3.5/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,161 copying build/lib.linux-armv7l-3.5/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,167 copying build/lib.linux-armv7l-3.5/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,175 copying build/lib.linux-armv7l-3.5/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,181 copying build/lib.linux-armv7l-3.5/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,187 copying build/lib.linux-armv7l-3.5/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-01-11T02:47:11,196 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,199 copying build/lib.linux-armv7l-3.5/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,205 copying build/lib.linux-armv7l-3.5/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,212 copying build/lib.linux-armv7l-3.5/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,218 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,263 copying build/lib.linux-armv7l-3.5/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,269 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,274 copying build/lib.linux-armv7l-3.5/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,281 copying build/lib.linux-armv7l-3.5/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,288 copying build/lib.linux-armv7l-3.5/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,295 copying build/lib.linux-armv7l-3.5/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,308 copying build/lib.linux-armv7l-3.5/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,317 copying build/lib.linux-armv7l-3.5/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,323 copying build/lib.linux-armv7l-3.5/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,330 copying build/lib.linux-armv7l-3.5/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,342 copying build/lib.linux-armv7l-3.5/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,360 copying build/lib.linux-armv7l-3.5/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,370 copying build/lib.linux-armv7l-3.5/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,378 copying build/lib.linux-armv7l-3.5/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,386 copying build/lib.linux-armv7l-3.5/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,393 copying build/lib.linux-armv7l-3.5/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,398 copying build/lib.linux-armv7l-3.5/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,405 copying build/lib.linux-armv7l-3.5/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,412 copying build/lib.linux-armv7l-3.5/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,426 copying build/lib.linux-armv7l-3.5/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,435 copying build/lib.linux-armv7l-3.5/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,442 copying build/lib.linux-armv7l-3.5/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,448 copying build/lib.linux-armv7l-3.5/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,453 copying build/lib.linux-armv7l-3.5/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,463 copying build/lib.linux-armv7l-3.5/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,472 copying build/lib.linux-armv7l-3.5/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,478 copying build/lib.linux-armv7l-3.5/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,483 copying build/lib.linux-armv7l-3.5/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-01-11T02:47:11,491 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,494 copying build/lib.linux-armv7l-3.5/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,502 copying build/lib.linux-armv7l-3.5/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,509 copying build/lib.linux-armv7l-3.5/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,516 copying build/lib.linux-armv7l-3.5/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,523 copying build/lib.linux-armv7l-3.5/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,530 copying build/lib.linux-armv7l-3.5/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,537 copying build/lib.linux-armv7l-3.5/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,546 copying build/lib.linux-armv7l-3.5/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,553 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,558 copying build/lib.linux-armv7l-3.5/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,569 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,574 copying build/lib.linux-armv7l-3.5/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-01-11T02:47:11,585 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,587 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,595 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,601 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,608 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,615 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,622 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,630 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,639 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,645 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,651 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,656 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,663 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-01-11T02:47:11,670 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,673 copying build/lib.linux-armv7l-3.5/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,684 copying build/lib.linux-armv7l-3.5/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,692 copying build/lib.linux-armv7l-3.5/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,699 copying build/lib.linux-armv7l-3.5/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,706 copying build/lib.linux-armv7l-3.5/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,712 copying build/lib.linux-armv7l-3.5/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,717 copying build/lib.linux-armv7l-3.5/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,723 copying build/lib.linux-armv7l-3.5/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,733 copying build/lib.linux-armv7l-3.5/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,740 copying build/lib.linux-armv7l-3.5/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-01-11T02:47:11,749 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,752 copying build/lib.linux-armv7l-3.5/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,760 copying build/lib.linux-armv7l-3.5/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,767 copying build/lib.linux-armv7l-3.5/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,774 copying build/lib.linux-armv7l-3.5/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,782 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,784 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,791 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,796 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,805 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,810 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,821 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,838 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,847 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,854 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,863 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,868 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,874 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,882 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-01-11T02:47:11,889 copying build/lib.linux-armv7l-3.5/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,896 copying build/lib.linux-armv7l-3.5/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,902 copying build/lib.linux-armv7l-3.5/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,908 copying build/lib.linux-armv7l-3.5/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,915 copying build/lib.linux-armv7l-3.5/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,922 copying build/lib.linux-armv7l-3.5/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,927 copying build/lib.linux-armv7l-3.5/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,936 copying build/lib.linux-armv7l-3.5/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,943 copying build/lib.linux-armv7l-3.5/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,948 copying build/lib.linux-armv7l-3.5/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-01-11T02:47:11,957 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:11,959 copying build/lib.linux-armv7l-3.5/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:11,966 copying build/lib.linux-armv7l-3.5/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:11,973 copying build/lib.linux-armv7l-3.5/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:11,981 copying build/lib.linux-armv7l-3.5/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:11,989 copying build/lib.linux-armv7l-3.5/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:11,994 copying build/lib.linux-armv7l-3.5/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,001 copying build/lib.linux-armv7l-3.5/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,007 copying build/lib.linux-armv7l-3.5/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,016 copying build/lib.linux-armv7l-3.5/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,023 copying build/lib.linux-armv7l-3.5/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,032 copying build/lib.linux-armv7l-3.5/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,038 copying build/lib.linux-armv7l-3.5/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,045 copying build/lib.linux-armv7l-3.5/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,051 copying build/lib.linux-armv7l-3.5/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,057 copying build/lib.linux-armv7l-3.5/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,064 copying build/lib.linux-armv7l-3.5/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,071 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,076 copying build/lib.linux-armv7l-3.5/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,084 copying build/lib.linux-armv7l-3.5/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,091 copying build/lib.linux-armv7l-3.5/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,097 copying build/lib.linux-armv7l-3.5/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,106 copying build/lib.linux-armv7l-3.5/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,114 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-01-11T02:47:12,120 copying build/lib.linux-armv7l-3.5/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-01-11T02:47:12,128 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,131 copying build/lib.linux-armv7l-3.5/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,139 copying build/lib.linux-armv7l-3.5/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,146 copying build/lib.linux-armv7l-3.5/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,153 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,161 copying build/lib.linux-armv7l-3.5/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,169 copying build/lib.linux-armv7l-3.5/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,180 copying build/lib.linux-armv7l-3.5/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,185 copying build/lib.linux-armv7l-3.5/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,192 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,198 copying build/lib.linux-armv7l-3.5/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,206 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,213 copying build/lib.linux-armv7l-3.5/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,223 copying build/lib.linux-armv7l-3.5/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,230 copying build/lib.linux-armv7l-3.5/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,238 copying build/lib.linux-armv7l-3.5/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,245 copying build/lib.linux-armv7l-3.5/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,253 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,260 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,286 copying build/lib.linux-armv7l-3.5/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,295 copying build/lib.linux-armv7l-3.5/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,302 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,306 copying build/lib.linux-armv7l-3.5/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,317 copying build/lib.linux-armv7l-3.5/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,323 copying build/lib.linux-armv7l-3.5/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,329 copying build/lib.linux-armv7l-3.5/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,336 copying build/lib.linux-armv7l-3.5/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,346 copying build/lib.linux-armv7l-3.5/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,352 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,358 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-01-11T02:47:12,373 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,375 copying build/lib.linux-armv7l-3.5/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,382 copying build/lib.linux-armv7l-3.5/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,395 copying build/lib.linux-armv7l-3.5/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,403 copying build/lib.linux-armv7l-3.5/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,409 copying build/lib.linux-armv7l-3.5/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,417 copying build/lib.linux-armv7l-3.5/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,423 copying build/lib.linux-armv7l-3.5/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,429 copying build/lib.linux-armv7l-3.5/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,435 copying build/lib.linux-armv7l-3.5/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,442 copying build/lib.linux-armv7l-3.5/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,450 copying build/lib.linux-armv7l-3.5/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,457 copying build/lib.linux-armv7l-3.5/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,464 copying build/lib.linux-armv7l-3.5/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,469 copying build/lib.linux-armv7l-3.5/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,476 copying build/lib.linux-armv7l-3.5/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,482 copying build/lib.linux-armv7l-3.5/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,491 copying build/lib.linux-armv7l-3.5/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-01-11T02:47:12,497 running install_egg_info 2021-01-11T02:47:12,525 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.5-py3.5.egg-info 2021-01-11T02:47:12,564 running install_scripts 2021-01-11T02:47:12,755 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.5.dist-info/WHEEL 2021-01-11T02:47:15,030 Building wheel for jcvi (setup.py): finished with status 'done' 2021-01-11T02:47:15,055 Created wheel for jcvi: filename=jcvi-1.1.5-cp35-cp35m-linux_armv7l.whl size=1147939 sha256=e885d9582df316512368cf37fa0a8bb387cafc107e29dd053f18a4926842fc9a 2021-01-11T02:47:15,056 Stored in directory: /tmp/pip-ephem-wheel-cache-9om5wh5a/wheels/6e/e8/1f/d3268c6e81d6601752e997fd992ca86a11e5334de91c0a01bb 2021-01-11T02:47:15,060 Successfully built jcvi 2021-01-11T02:47:15,267 Removed build tracker: '/tmp/pip-req-tracker-178ceg1x'