2021-01-11T17:25:06,774 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-01-11T17:25:07,495 Created temporary directory: /tmp/pip-ephem-wheel-cache-9c48vxub
2021-01-11T17:25:07,500 Created temporary directory: /tmp/pip-req-tracker-412ttsbb
2021-01-11T17:25:07,501 Initialized build tracking at /tmp/pip-req-tracker-412ttsbb
2021-01-11T17:25:07,501 Created build tracker: /tmp/pip-req-tracker-412ttsbb
2021-01-11T17:25:07,501 Entered build tracker: /tmp/pip-req-tracker-412ttsbb
2021-01-11T17:25:07,503 Created temporary directory: /tmp/pip-wheel-7c5idth5
2021-01-11T17:25:07,522 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2021-01-11T17:25:07,525 2 location(s) to search for versions of apples:
2021-01-11T17:25:07,525 * https://pypi.org/simple/apples/
2021-01-11T17:25:07,525 * https://pypi.ngc.nvidia.com/apples/
2021-01-11T17:25:07,525 Fetching project page and analyzing links: https://pypi.org/simple/apples/
2021-01-11T17:25:07,527 Getting page https://pypi.org/simple/apples/
2021-01-11T17:25:07,531 Found index url https://pypi.org/simple
2021-01-11T17:25:08,131   Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1
2021-01-11T17:25:08,132   Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3
2021-01-11T17:25:08,132   Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4
2021-01-11T17:25:08,133   Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0
2021-01-11T17:25:08,134   Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0
2021-01-11T17:25:08,135 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/apples/
2021-01-11T17:25:08,135 Getting page https://pypi.ngc.nvidia.com/apples/
2021-01-11T17:25:08,138 Found index url https://pypi.ngc.nvidia.com
2021-01-11T17:25:09,157 Could not fetch URL https://pypi.ngc.nvidia.com/apples/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/apples/ - skipping
2021-01-11T17:25:09,174 Given no hashes to check 1 links for project 'apples': discarding no candidates
2021-01-11T17:25:09,176 Using version 2.0.0 (newest of versions: 2.0.0)
2021-01-11T17:25:09,184 Collecting apples==2.0.0
2021-01-11T17:25:09,189   Created temporary directory: /tmp/pip-unpack-4u4a_7mn
2021-01-11T17:25:09,443   Downloading apples-2.0.0.tar.gz (757 kB)
2021-01-11T17:25:10,111   Added apples==2.0.0 from https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b to build tracker '/tmp/pip-req-tracker-412ttsbb'
2021-01-11T17:25:10,113     Running setup.py (path:/tmp/pip-wheel-7c5idth5/apples/setup.py) egg_info for package apples
2021-01-11T17:25:10,115     Created temporary directory: /tmp/pip-pip-egg-info-9faix41c
2021-01-11T17:25:10,115     Running command python setup.py egg_info
2021-01-11T17:25:12,455     running egg_info
2021-01-11T17:25:12,460     creating /tmp/pip-pip-egg-info-9faix41c/apples.egg-info
2021-01-11T17:25:12,463     writing /tmp/pip-pip-egg-info-9faix41c/apples.egg-info/PKG-INFO
2021-01-11T17:25:12,469     writing requirements to /tmp/pip-pip-egg-info-9faix41c/apples.egg-info/requires.txt
2021-01-11T17:25:12,472     writing top-level names to /tmp/pip-pip-egg-info-9faix41c/apples.egg-info/top_level.txt
2021-01-11T17:25:12,474     writing dependency_links to /tmp/pip-pip-egg-info-9faix41c/apples.egg-info/dependency_links.txt
2021-01-11T17:25:12,479     writing manifest file '/tmp/pip-pip-egg-info-9faix41c/apples.egg-info/SOURCES.txt'
2021-01-11T17:25:12,853     reading manifest file '/tmp/pip-pip-egg-info-9faix41c/apples.egg-info/SOURCES.txt'
2021-01-11T17:25:12,857     reading manifest template 'MANIFEST.in'
2021-01-11T17:25:12,870     writing manifest file '/tmp/pip-pip-egg-info-9faix41c/apples.egg-info/SOURCES.txt'
2021-01-11T17:25:13,010   Source in /tmp/pip-wheel-7c5idth5/apples has version 2.0.0, which satisfies requirement apples==2.0.0 from https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b
2021-01-11T17:25:13,012   Removed apples==2.0.0 from https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b from build tracker '/tmp/pip-req-tracker-412ttsbb'
2021-01-11T17:25:13,016 Building wheels for collected packages: apples
2021-01-11T17:25:13,025   Created temporary directory: /tmp/pip-wheel-p_6p86i4
2021-01-11T17:25:13,026   Building wheel for apples (setup.py): started
2021-01-11T17:25:13,026   Destination directory: /tmp/pip-wheel-p_6p86i4
2021-01-11T17:25:13,027   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7c5idth5/apples/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7c5idth5/apples/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-p_6p86i4
2021-01-11T17:25:15,399   running bdist_wheel
2021-01-11T17:25:15,415   running build
2021-01-11T17:25:15,416   running build_py
2021-01-11T17:25:15,764   creating build
2021-01-11T17:25:15,765   creating build/lib
2021-01-11T17:25:15,766   creating build/lib/apples
2021-01-11T17:25:15,770   copying apples/OptionsRun.py -> build/lib/apples
2021-01-11T17:25:15,775   copying apples/fasta2dic.py -> build/lib/apples
2021-01-11T17:25:15,780   copying apples/OptionsBuild.py -> build/lib/apples
2021-01-11T17:25:15,784   copying apples/OptionsBasic.py -> build/lib/apples
2021-01-11T17:25:15,789   copying apples/Algorithm.py -> build/lib/apples
2021-01-11T17:25:15,793   copying apples/Reference.py -> build/lib/apples
2021-01-11T17:25:15,798   copying apples/OLS.py -> build/lib/apples
2021-01-11T17:25:15,803   copying apples/BME.py -> build/lib/apples
2021-01-11T17:25:15,808   copying apples/Subtree.py -> build/lib/apples
2021-01-11T17:25:15,813   copying apples/util.py -> build/lib/apples
2021-01-11T17:25:15,817   copying apples/BE.py -> build/lib/apples
2021-01-11T17:25:15,823   copying apples/PoolRepresentativeWorker.py -> build/lib/apples
2021-01-11T17:25:15,829   copying apples/PoolQueryWorker.py -> build/lib/apples
2021-01-11T17:25:15,835   copying apples/jutil.py -> build/lib/apples
2021-01-11T17:25:15,841   copying apples/distance.py -> build/lib/apples
2021-01-11T17:25:15,846   copying apples/reestimateBackbone.py -> build/lib/apples
2021-01-11T17:25:15,851   copying apples/__init__.py -> build/lib/apples
2021-01-11T17:25:15,854   copying apples/PrioritySet.py -> build/lib/apples
2021-01-11T17:25:15,859   copying apples/prepareTree.py -> build/lib/apples
2021-01-11T17:25:15,864   copying apples/FM.py -> build/lib/apples
2021-01-11T17:25:15,872   creating build/lib/apples/tools
2021-01-11T17:25:15,874   copying apples/tools/__init__.py -> build/lib/apples/tools
2021-01-11T17:25:15,878   running egg_info
2021-01-11T17:25:15,910   writing apples.egg-info/PKG-INFO
2021-01-11T17:25:15,914   writing requirements to apples.egg-info/requires.txt
2021-01-11T17:25:15,917   writing dependency_links to apples.egg-info/dependency_links.txt
2021-01-11T17:25:15,919   writing top-level names to apples.egg-info/top_level.txt
2021-01-11T17:25:15,933   reading manifest file 'apples.egg-info/SOURCES.txt'
2021-01-11T17:25:15,940   reading manifest template 'MANIFEST.in'
2021-01-11T17:25:15,956   writing manifest file 'apples.egg-info/SOURCES.txt'
2021-01-11T17:25:15,962   copying apples/tools/FastTree-darwin -> build/lib/apples/tools
2021-01-11T17:25:16,050   copying apples/tools/FastTree-linux -> build/lib/apples/tools
2021-01-11T17:25:16,093   copying apples/tools/FastTree.exe -> build/lib/apples/tools
2021-01-11T17:25:16,138   running build_scripts
2021-01-11T17:25:16,141   creating build/scripts-3.5
2021-01-11T17:25:16,144   copying and adjusting run_apples.py -> build/scripts-3.5
2021-01-11T17:25:16,150   copying build_applesdtb.py -> build/scripts-3.5
2021-01-11T17:25:16,153   changing mode of build/scripts-3.5/run_apples.py from 644 to 755
2021-01-11T17:25:16,154   changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755
2021-01-11T17:25:16,162   installing to build/bdist.linux-armv7l/wheel
2021-01-11T17:25:16,163   running install
2021-01-11T17:25:16,165   running install_lib
2021-01-11T17:25:16,173   creating build/bdist.linux-armv7l
2021-01-11T17:25:16,174   creating build/bdist.linux-armv7l/wheel
2021-01-11T17:25:16,179   creating build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,181   copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,186   copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,192   copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,198   copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,203   copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,209   copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,215   copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,220   copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,227   copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,233   copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,239   copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,245   copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,250   copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,254   copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,259   copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,264   copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,268   copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,273   copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,280   creating build/bdist.linux-armv7l/wheel/apples/tools
2021-01-11T17:25:16,283   copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools
2021-01-11T17:25:16,375   copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools
2021-01-11T17:25:16,417   copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools
2021-01-11T17:25:16,422   copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools
2021-01-11T17:25:16,458   copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,464   copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples
2021-01-11T17:25:16,469   running install_egg_info
2021-01-11T17:25:16,488   Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.0-py3.5.egg-info
2021-01-11T17:25:16,518   running install_scripts
2021-01-11T17:25:16,651   creating build/bdist.linux-armv7l/wheel/apples-2.0.0.data
2021-01-11T17:25:16,652   creating build/bdist.linux-armv7l/wheel/apples-2.0.0.data/scripts
2021-01-11T17:25:16,655   copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.0.data/scripts
2021-01-11T17:25:16,660   copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.0.data/scripts
2021-01-11T17:25:16,664   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.0.data/scripts/run_apples.py to 755
2021-01-11T17:25:16,665   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.0.data/scripts/build_applesdtb.py to 755
2021-01-11T17:25:16,727   creating build/bdist.linux-armv7l/wheel/apples-2.0.0.dist-info/WHEEL
2021-01-11T17:25:17,605   Building wheel for apples (setup.py): finished with status 'done'
2021-01-11T17:25:17,622   Created wheel for apples: filename=apples-2.0.0-py3-none-any.whl size=764633 sha256=36ed7d6802e7c3b46a33b3e4c54324ffcb8e8d659556dcf6261ecd0208f4f2f5
2021-01-11T17:25:17,623   Stored in directory: /tmp/pip-ephem-wheel-cache-9c48vxub/wheels/b2/fb/dc/8b82ae38d3ca8e27bc10ff545fb523ba20df9830eddf7e1f11
2021-01-11T17:25:17,627 Successfully built apples
2021-01-11T17:25:17,766 Removed build tracker: '/tmp/pip-req-tracker-412ttsbb'