2021-01-15T14:42:33,958 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-15T14:42:34,698 Created temporary directory: /tmp/pip-ephem-wheel-cache-q2ayouve 2021-01-15T14:42:34,703 Created temporary directory: /tmp/pip-req-tracker-jk2dnks9 2021-01-15T14:42:34,704 Initialized build tracking at /tmp/pip-req-tracker-jk2dnks9 2021-01-15T14:42:34,704 Created build tracker: /tmp/pip-req-tracker-jk2dnks9 2021-01-15T14:42:34,705 Entered build tracker: /tmp/pip-req-tracker-jk2dnks9 2021-01-15T14:42:34,706 Created temporary directory: /tmp/pip-wheel-uub9iysm 2021-01-15T14:42:34,726 1 location(s) to search for versions of ultra-bioinformatics: 2021-01-15T14:42:34,726 * https://pypi.org/simple/ultra-bioinformatics/ 2021-01-15T14:42:34,727 Fetching project page and analyzing links: https://pypi.org/simple/ultra-bioinformatics/ 2021-01-15T14:42:34,729 Getting page https://pypi.org/simple/ultra-bioinformatics/ 2021-01-15T14:42:34,734 Found index url https://pypi.org/simple 2021-01-15T14:42:35,063 Found link https://files.pythonhosted.org/packages/65/29/65df1f02482f26455e91116a925a37bc462f3661f2974c1876d0b33d8c08/ultra_bioinformatics-0.0.1.tar.gz#sha256=a4e61a998acdde447ba08aa6e43845ac44e27466e38032739c016a6f29972b2a (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.1 2021-01-15T14:42:35,066 Found link https://files.pythonhosted.org/packages/5f/43/f6a6c124ffb15a523e4a9b3feb91d28c60cb49478e4a8d308baea169a489/ultra_bioinformatics-0.0.2.tar.gz#sha256=fa4c15927e73e25d98ce7884765ce5af26986cd646a1162d840d9e019cbd66e3 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2 2021-01-15T14:42:35,069 Found link https://files.pythonhosted.org/packages/6a/58/a30039878dcb4bb59cdbeba01097be3820098a63a1310549f222810f085d/ultra_bioinformatics-0.0.2.1.tar.gz#sha256=4efc237f9759fe47808c22c1ee564412edf39c3dc21b0aa6b2af74009d2d64a7 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.1 2021-01-15T14:42:35,073 Found link https://files.pythonhosted.org/packages/63/eb/35e910e857d69319193e83b7597015c0db24697a23d5c54908b01faaf0db/ultra_bioinformatics-0.0.2.2.tar.gz#sha256=7557c1f0137b290c24bbf5a3255f028c5c26ab03aa14264d0cf7aa0a20499818 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.2 2021-01-15T14:42:35,076 Found link https://files.pythonhosted.org/packages/24/c0/bf7ee45736b40edc7ef301675d1399fe7dfa4caa2232851353b163e8669e/ultra_bioinformatics-0.0.2.3.tar.gz#sha256=a9686a3fafee9539aff6728667008e892f4a5acdf9558edfb48b7f2fdf8fc2b4 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.3 2021-01-15T14:42:35,079 Found link https://files.pythonhosted.org/packages/d3/e3/75cb2bea730add7403f940e5e869099dbdaa458f246aa66f056d127e2661/ultra_bioinformatics-0.0.2.4.tar.gz#sha256=953e1dcad9bcec9c461e9b6492cfb2b76d907859a313c38764d20a9e6dca49b9 (from https://pypi.org/simple/ultra-bioinformatics/) (requires-python:!=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4), version: 0.0.2.4 2021-01-15T14:42:35,090 Given no hashes to check 1 links for project 'ultra-bioinformatics': discarding no candidates 2021-01-15T14:42:35,092 Using version 0.0.2.4 (newest of versions: 0.0.2.4) 2021-01-15T14:42:35,100 Collecting ultra-bioinformatics==0.0.2.4 2021-01-15T14:42:35,106 Created temporary directory: /tmp/pip-unpack-cl3hxtuf 2021-01-15T14:42:35,333 Downloading ultra_bioinformatics-0.0.2.4.tar.gz (54 kB) 2021-01-15T14:42:35,529 Added ultra-bioinformatics==0.0.2.4 from https://files.pythonhosted.org/packages/d3/e3/75cb2bea730add7403f940e5e869099dbdaa458f246aa66f056d127e2661/ultra_bioinformatics-0.0.2.4.tar.gz#sha256=953e1dcad9bcec9c461e9b6492cfb2b76d907859a313c38764d20a9e6dca49b9 to build tracker '/tmp/pip-req-tracker-jk2dnks9' 2021-01-15T14:42:35,531 Running setup.py (path:/tmp/pip-wheel-uub9iysm/ultra-bioinformatics/setup.py) egg_info for package ultra-bioinformatics 2021-01-15T14:42:35,533 Created temporary directory: /tmp/pip-pip-egg-info-i33vbkay 2021-01-15T14:42:35,533 Running command python setup.py egg_info 2021-01-15T14:42:37,972 running egg_info 2021-01-15T14:42:37,980 creating /tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info 2021-01-15T14:42:37,983 writing requirements to /tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info/requires.txt 2021-01-15T14:42:37,986 writing /tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info/PKG-INFO 2021-01-15T14:42:37,992 writing dependency_links to /tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info/dependency_links.txt 2021-01-15T14:42:37,994 writing top-level names to /tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info/top_level.txt 2021-01-15T14:42:37,999 writing manifest file '/tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info/SOURCES.txt' 2021-01-15T14:42:38,374 reading manifest file '/tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info/SOURCES.txt' 2021-01-15T14:42:38,383 writing manifest file '/tmp/pip-pip-egg-info-i33vbkay/ultra_bioinformatics.egg-info/SOURCES.txt' 2021-01-15T14:42:38,527 Source in /tmp/pip-wheel-uub9iysm/ultra-bioinformatics has version 0.0.2.4, which satisfies requirement ultra-bioinformatics==0.0.2.4 from https://files.pythonhosted.org/packages/d3/e3/75cb2bea730add7403f940e5e869099dbdaa458f246aa66f056d127e2661/ultra_bioinformatics-0.0.2.4.tar.gz#sha256=953e1dcad9bcec9c461e9b6492cfb2b76d907859a313c38764d20a9e6dca49b9 2021-01-15T14:42:38,529 Removed ultra-bioinformatics==0.0.2.4 from https://files.pythonhosted.org/packages/d3/e3/75cb2bea730add7403f940e5e869099dbdaa458f246aa66f056d127e2661/ultra_bioinformatics-0.0.2.4.tar.gz#sha256=953e1dcad9bcec9c461e9b6492cfb2b76d907859a313c38764d20a9e6dca49b9 from build tracker '/tmp/pip-req-tracker-jk2dnks9' 2021-01-15T14:42:38,538 Building wheels for collected packages: ultra-bioinformatics 2021-01-15T14:42:38,547 Created temporary directory: /tmp/pip-wheel-qnqvpf16 2021-01-15T14:42:38,548 Building wheel for ultra-bioinformatics (setup.py): started 2021-01-15T14:42:38,549 Destination directory: /tmp/pip-wheel-qnqvpf16 2021-01-15T14:42:38,549 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-uub9iysm/ultra-bioinformatics/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-uub9iysm/ultra-bioinformatics/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qnqvpf16 2021-01-15T14:42:41,032 running bdist_wheel 2021-01-15T14:42:41,048 running build 2021-01-15T14:42:41,049 running build_py 2021-01-15T14:42:41,394 creating build 2021-01-15T14:42:41,395 creating build/lib 2021-01-15T14:42:41,396 creating build/lib/modules 2021-01-15T14:42:41,400 copying modules/help_functions.py -> build/lib/modules 2021-01-15T14:42:41,406 copying modules/align.py -> build/lib/modules 2021-01-15T14:42:41,415 copying modules/create_augmented_gene.py -> build/lib/modules 2021-01-15T14:42:41,425 copying modules/mem_wrapper.py -> build/lib/modules 2021-01-15T14:42:41,432 copying modules/classify_read_with_mams.py -> build/lib/modules 2021-01-15T14:42:41,440 copying modules/__init__.py -> build/lib/modules 2021-01-15T14:42:41,444 copying modules/prefilter_genomic_reads.py -> build/lib/modules 2021-01-15T14:42:41,449 copying modules/colinear_solver.py -> build/lib/modules 2021-01-15T14:42:41,457 copying modules/sam_output.py -> build/lib/modules 2021-01-15T14:42:41,465 copying modules/classify_alignment2.py -> build/lib/modules 2021-01-15T14:42:41,471 copying modules/range_query_max_search_tree.py -> build/lib/modules 2021-01-15T14:42:41,479 running build_scripts 2021-01-15T14:42:41,480 creating build/scripts-3.5 2021-01-15T14:42:41,484 copying and adjusting uLTRA -> build/scripts-3.5 2021-01-15T14:42:41,492 changing mode of build/scripts-3.5/uLTRA from 644 to 755 2021-01-15T14:42:41,500 installing to build/bdist.linux-armv7l/wheel 2021-01-15T14:42:41,501 running install 2021-01-15T14:42:41,503 running install_lib 2021-01-15T14:42:41,511 creating build/bdist.linux-armv7l 2021-01-15T14:42:41,512 creating build/bdist.linux-armv7l/wheel 2021-01-15T14:42:41,516 creating build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,519 copying build/lib/modules/help_functions.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,525 copying build/lib/modules/align.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,533 copying build/lib/modules/create_augmented_gene.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,543 copying build/lib/modules/mem_wrapper.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,550 copying build/lib/modules/classify_read_with_mams.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,558 copying build/lib/modules/__init__.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,562 copying build/lib/modules/prefilter_genomic_reads.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,567 copying build/lib/modules/colinear_solver.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,574 copying build/lib/modules/sam_output.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,580 copying build/lib/modules/classify_alignment2.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,587 copying build/lib/modules/range_query_max_search_tree.py -> build/bdist.linux-armv7l/wheel/modules 2021-01-15T14:42:41,593 running install_egg_info 2021-01-15T14:42:41,642 running egg_info 2021-01-15T14:42:41,644 writing requirements to ultra_bioinformatics.egg-info/requires.txt 2021-01-15T14:42:41,649 writing top-level names to ultra_bioinformatics.egg-info/top_level.txt 2021-01-15T14:42:41,651 writing ultra_bioinformatics.egg-info/PKG-INFO 2021-01-15T14:42:41,656 writing dependency_links to ultra_bioinformatics.egg-info/dependency_links.txt 2021-01-15T14:42:41,668 reading manifest file 'ultra_bioinformatics.egg-info/SOURCES.txt' 2021-01-15T14:42:41,679 writing manifest file 'ultra_bioinformatics.egg-info/SOURCES.txt' 2021-01-15T14:42:41,683 Copying ultra_bioinformatics.egg-info to build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.2.4-py3.5.egg-info 2021-01-15T14:42:41,711 running install_scripts 2021-01-15T14:42:41,845 creating build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.2.4.data 2021-01-15T14:42:41,846 creating build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.2.4.data/scripts 2021-01-15T14:42:41,849 copying build/scripts-3.5/uLTRA -> build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.2.4.data/scripts 2021-01-15T14:42:41,857 changing mode of build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.2.4.data/scripts/uLTRA to 755 2021-01-15T14:42:41,942 creating build/bdist.linux-armv7l/wheel/ultra_bioinformatics-0.0.2.4.dist-info/WHEEL 2021-01-15T14:42:42,235 Building wheel for ultra-bioinformatics (setup.py): finished with status 'done' 2021-01-15T14:42:42,240 Created wheel for ultra-bioinformatics: filename=ultra_bioinformatics-0.0.2.4-py3-none-any.whl size=57291 sha256=a70f5c717f458d00193f464904654e4bfad17d5c69dba1d2a4daccfe5c0c9260 2021-01-15T14:42:42,241 Stored in directory: /tmp/pip-ephem-wheel-cache-q2ayouve/wheels/ea/e0/82/9d8ee684d5e2fc8c7f29618303ac4fc5c19e3e806d0d463b8c 2021-01-15T14:42:42,245 Successfully built ultra-bioinformatics 2021-01-15T14:42:42,261 Removed build tracker: '/tmp/pip-req-tracker-jk2dnks9'