2021-01-22T06:21:21,740 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-01-22T06:21:22,466 Created temporary directory: /tmp/pip-ephem-wheel-cache-fa0orebn 2021-01-22T06:21:22,471 Created temporary directory: /tmp/pip-req-tracker-o6yb9fw2 2021-01-22T06:21:22,472 Initialized build tracking at /tmp/pip-req-tracker-o6yb9fw2 2021-01-22T06:21:22,472 Created build tracker: /tmp/pip-req-tracker-o6yb9fw2 2021-01-22T06:21:22,472 Entered build tracker: /tmp/pip-req-tracker-o6yb9fw2 2021-01-22T06:21:22,474 Created temporary directory: /tmp/pip-wheel-mff_csol 2021-01-22T06:21:22,493 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2021-01-22T06:21:22,496 2 location(s) to search for versions of apples: 2021-01-22T06:21:22,496 * https://pypi.org/simple/apples/ 2021-01-22T06:21:22,496 * https://pypi.ngc.nvidia.com/apples/ 2021-01-22T06:21:22,497 Fetching project page and analyzing links: https://pypi.org/simple/apples/ 2021-01-22T06:21:22,499 Getting page https://pypi.org/simple/apples/ 2021-01-22T06:21:22,503 Found index url https://pypi.org/simple 2021-01-22T06:21:22,822 Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1 2021-01-22T06:21:22,823 Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3 2021-01-22T06:21:22,824 Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4 2021-01-22T06:21:22,824 Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0 2021-01-22T06:21:22,825 Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0 2021-01-22T06:21:22,826 Found link https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df (from https://pypi.org/simple/apples/), version: 2.0.1 2021-01-22T06:21:22,826 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/apples/ 2021-01-22T06:21:22,827 Getting page https://pypi.ngc.nvidia.com/apples/ 2021-01-22T06:21:22,830 Found index url https://pypi.ngc.nvidia.com 2021-01-22T06:21:23,840 Could not fetch URL https://pypi.ngc.nvidia.com/apples/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/apples/ - skipping 2021-01-22T06:21:23,860 Given no hashes to check 1 links for project 'apples': discarding no candidates 2021-01-22T06:21:23,862 Using version 2.0.1 (newest of versions: 2.0.1) 2021-01-22T06:21:23,871 Collecting apples==2.0.1 2021-01-22T06:21:23,876 Created temporary directory: /tmp/pip-unpack-3rsgkodw 2021-01-22T06:21:24,178 Downloading apples-2.0.1.tar.gz (757 kB) 2021-01-22T06:21:24,848 Added apples==2.0.1 from https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df to build tracker '/tmp/pip-req-tracker-o6yb9fw2' 2021-01-22T06:21:24,850 Running setup.py (path:/tmp/pip-wheel-mff_csol/apples/setup.py) egg_info for package apples 2021-01-22T06:21:24,853 Created temporary directory: /tmp/pip-pip-egg-info-i4s9s_9q 2021-01-22T06:21:24,854 Running command python setup.py egg_info 2021-01-22T06:21:27,236 running egg_info 2021-01-22T06:21:27,241 creating /tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info 2021-01-22T06:21:27,244 writing top-level names to /tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info/top_level.txt 2021-01-22T06:21:27,247 writing requirements to /tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info/requires.txt 2021-01-22T06:21:27,249 writing dependency_links to /tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info/dependency_links.txt 2021-01-22T06:21:27,252 writing /tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info/PKG-INFO 2021-01-22T06:21:27,260 writing manifest file '/tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info/SOURCES.txt' 2021-01-22T06:21:27,643 reading manifest file '/tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info/SOURCES.txt' 2021-01-22T06:21:27,647 reading manifest template 'MANIFEST.in' 2021-01-22T06:21:27,660 writing manifest file '/tmp/pip-pip-egg-info-i4s9s_9q/apples.egg-info/SOURCES.txt' 2021-01-22T06:21:27,801 Source in /tmp/pip-wheel-mff_csol/apples has version 2.0.1, which satisfies requirement apples==2.0.1 from https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df 2021-01-22T06:21:27,803 Removed apples==2.0.1 from https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df from build tracker '/tmp/pip-req-tracker-o6yb9fw2' 2021-01-22T06:21:27,806 Building wheels for collected packages: apples 2021-01-22T06:21:27,815 Created temporary directory: /tmp/pip-wheel-tdu7a9xq 2021-01-22T06:21:27,816 Building wheel for apples (setup.py): started 2021-01-22T06:21:27,817 Destination directory: /tmp/pip-wheel-tdu7a9xq 2021-01-22T06:21:27,818 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mff_csol/apples/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mff_csol/apples/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tdu7a9xq 2021-01-22T06:21:30,169 running bdist_wheel 2021-01-22T06:21:30,186 running build 2021-01-22T06:21:30,187 running build_py 2021-01-22T06:21:30,532 creating build 2021-01-22T06:21:30,533 creating build/lib 2021-01-22T06:21:30,535 creating build/lib/apples 2021-01-22T06:21:30,538 copying apples/OptionsRun.py -> build/lib/apples 2021-01-22T06:21:30,543 copying apples/fasta2dic.py -> build/lib/apples 2021-01-22T06:21:30,547 copying apples/OptionsBuild.py -> build/lib/apples 2021-01-22T06:21:30,552 copying apples/OptionsBasic.py -> build/lib/apples 2021-01-22T06:21:30,556 copying apples/Algorithm.py -> build/lib/apples 2021-01-22T06:21:30,561 copying apples/Reference.py -> build/lib/apples 2021-01-22T06:21:30,567 copying apples/OLS.py -> build/lib/apples 2021-01-22T06:21:30,573 copying apples/BME.py -> build/lib/apples 2021-01-22T06:21:30,580 copying apples/Subtree.py -> build/lib/apples 2021-01-22T06:21:30,586 copying apples/util.py -> build/lib/apples 2021-01-22T06:21:30,592 copying apples/BE.py -> build/lib/apples 2021-01-22T06:21:30,598 copying apples/PoolRepresentativeWorker.py -> build/lib/apples 2021-01-22T06:21:30,603 copying apples/PoolQueryWorker.py -> build/lib/apples 2021-01-22T06:21:30,608 copying apples/jutil.py -> build/lib/apples 2021-01-22T06:21:30,612 copying apples/distance.py -> build/lib/apples 2021-01-22T06:21:30,617 copying apples/reestimateBackbone.py -> build/lib/apples 2021-01-22T06:21:30,622 copying apples/__init__.py -> build/lib/apples 2021-01-22T06:21:30,627 copying apples/PrioritySet.py -> build/lib/apples 2021-01-22T06:21:30,633 copying apples/prepareTree.py -> build/lib/apples 2021-01-22T06:21:30,639 copying apples/FM.py -> build/lib/apples 2021-01-22T06:21:30,646 creating build/lib/apples/tools 2021-01-22T06:21:30,649 copying apples/tools/__init__.py -> build/lib/apples/tools 2021-01-22T06:21:30,652 running egg_info 2021-01-22T06:21:30,687 writing top-level names to apples.egg-info/top_level.txt 2021-01-22T06:21:30,690 writing apples.egg-info/PKG-INFO 2021-01-22T06:21:30,694 writing requirements to apples.egg-info/requires.txt 2021-01-22T06:21:30,696 writing dependency_links to apples.egg-info/dependency_links.txt 2021-01-22T06:21:30,710 reading manifest file 'apples.egg-info/SOURCES.txt' 2021-01-22T06:21:30,716 reading manifest template 'MANIFEST.in' 2021-01-22T06:21:30,731 writing manifest file 'apples.egg-info/SOURCES.txt' 2021-01-22T06:21:30,736 copying apples/tools/FastTree-darwin -> build/lib/apples/tools 2021-01-22T06:21:30,826 copying apples/tools/FastTree-linux -> build/lib/apples/tools 2021-01-22T06:21:30,868 copying apples/tools/FastTree.exe -> build/lib/apples/tools 2021-01-22T06:21:30,905 running build_scripts 2021-01-22T06:21:30,906 creating build/scripts-3.5 2021-01-22T06:21:30,909 copying and adjusting run_apples.py -> build/scripts-3.5 2021-01-22T06:21:30,915 copying build_applesdtb.py -> build/scripts-3.5 2021-01-22T06:21:30,920 changing mode of build/scripts-3.5/run_apples.py from 644 to 755 2021-01-22T06:21:30,921 changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755 2021-01-22T06:21:30,936 installing to build/bdist.linux-armv7l/wheel 2021-01-22T06:21:30,937 running install 2021-01-22T06:21:30,939 running install_lib 2021-01-22T06:21:30,947 creating build/bdist.linux-armv7l 2021-01-22T06:21:30,948 creating build/bdist.linux-armv7l/wheel 2021-01-22T06:21:30,953 creating build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,955 copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,960 copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,964 copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,968 copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,973 copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,978 copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,984 copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,990 copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:30,997 copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,002 copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,008 copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,014 copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,020 copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,026 copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,031 copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,038 copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,044 copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,049 copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,056 creating build/bdist.linux-armv7l/wheel/apples/tools 2021-01-22T06:21:31,059 copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools 2021-01-22T06:21:31,153 copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools 2021-01-22T06:21:31,194 copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools 2021-01-22T06:21:31,197 copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools 2021-01-22T06:21:31,231 copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,235 copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples 2021-01-22T06:21:31,239 running install_egg_info 2021-01-22T06:21:31,267 Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.1-py3.5.egg-info 2021-01-22T06:21:31,299 running install_scripts 2021-01-22T06:21:31,431 creating build/bdist.linux-armv7l/wheel/apples-2.0.1.data 2021-01-22T06:21:31,432 creating build/bdist.linux-armv7l/wheel/apples-2.0.1.data/scripts 2021-01-22T06:21:31,434 copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.1.data/scripts 2021-01-22T06:21:31,440 copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.1.data/scripts 2021-01-22T06:21:31,444 changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.1.data/scripts/run_apples.py to 755 2021-01-22T06:21:31,445 changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.1.data/scripts/build_applesdtb.py to 755 2021-01-22T06:21:31,498 creating build/bdist.linux-armv7l/wheel/apples-2.0.1.dist-info/WHEEL 2021-01-22T06:21:32,369 Building wheel for apples (setup.py): finished with status 'done' 2021-01-22T06:21:32,385 Created wheel for apples: filename=apples-2.0.1-py3-none-any.whl size=765126 sha256=fee4f72b4099ede7c621605a227fae27775f03d2a9654b17e6e6cb5bc971069e 2021-01-22T06:21:32,386 Stored in directory: /tmp/pip-ephem-wheel-cache-fa0orebn/wheels/a8/cc/33/985156a5d6b5db303dce65ac5b1ca866414a757f1a34194fc6 2021-01-22T06:21:32,390 Successfully built apples 2021-01-22T06:21:32,530 Removed build tracker: '/tmp/pip-req-tracker-o6yb9fw2'