2021-01-28T21:23:17,759 Created temporary directory: /tmp/pip-ephem-wheel-cache-ydlrt8cw 2021-01-28T21:23:17,762 Created temporary directory: /tmp/pip-req-tracker-t5vwhgch 2021-01-28T21:23:17,762 Initialized build tracking at /tmp/pip-req-tracker-t5vwhgch 2021-01-28T21:23:17,762 Created build tracker: /tmp/pip-req-tracker-t5vwhgch 2021-01-28T21:23:17,762 Entered build tracker: /tmp/pip-req-tracker-t5vwhgch 2021-01-28T21:23:17,763 Created temporary directory: /tmp/pip-wheel-e4yafqbp 2021-01-28T21:23:17,797 1 location(s) to search for versions of dadi: 2021-01-28T21:23:17,797 * https://pypi.org/simple/dadi/ 2021-01-28T21:23:17,797 Fetching project page and analyzing links: https://pypi.org/simple/dadi/ 2021-01-28T21:23:17,798 Getting page https://pypi.org/simple/dadi/ 2021-01-28T21:23:17,799 Found index url https://pypi.org/simple 2021-01-28T21:23:17,909 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/a0/90/3c79d2526f0a8d618db53d12845c82e0c4da4d26e8cf3180a7d7074f348a/dadi-1.9.92-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=f512d91bb45eaa4463ef9d8b7e3391d9d5292428f2179e73d0859d319e444a9c (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,910 Found link https://files.pythonhosted.org/packages/41/b7/79564b96938451691e1505554798f4d62748ea25d64bf589e883455938da/dadi-1.9.92.tar.gz#sha256=c842ed5641b46d5d0ba5a5f3a7bc0ab7a588324e376ecc0743514448eb080611 (from https://pypi.org/simple/dadi/), version: 1.9.92 2021-01-28T21:23:17,911 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/53/5e/fea903fd0c54bdd9d87e9d0a8e552204f4596bcbb40173d469742ac1ab6d/dadi-2.0.1-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=80bd4d1a3157545b92a43840613d325d4e493e1a7df0154cc5572d4e6cda8a3b (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,911 Found link https://files.pythonhosted.org/packages/06/94/dbf599959d8a04ea52c520414d1af185a8f57cd2c2be7181af97e927852a/dadi-2.0.1.tar.gz#sha256=a3bf1d780eb97bd3a9804c063e5a463ca8b7c9bb2a4bc21b23ef0b5192d67be3 (from https://pypi.org/simple/dadi/), version: 2.0.1 2021-01-28T21:23:17,911 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/2e/b8/8b868a117552fde24a5d513e8673fa059bd106fc87c1bb8743b000cc343d/dadi-2.0.2-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=de3bc70b1c95c750e641e0e1b05ce757bd8894b1ab61406483a6281144458b43 (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,912 Found link https://files.pythonhosted.org/packages/05/3c/0679df7beac434aa1dfaae53ef4b1717d849dcc8b7eadf2ef0f42545f22c/dadi-2.0.2.tar.gz#sha256=91013eaca614600944254e8618e02de188461cb35d6a1fdf8133b2acd722803d (from https://pypi.org/simple/dadi/), version: 2.0.2 2021-01-28T21:23:17,912 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/2b/87/9645c8580abd51d5be25532f7927e067020cf03871b5a1468c29849a72af/dadi-2.0.3-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=bfb0af514aacae0da5be85f15cb562d851e44406dacb419770f59d16e28540a7 (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,912 Found link https://files.pythonhosted.org/packages/20/43/6bb9b18f73e31701eeff2f69ca3964ea8ce483bd444ecb4c8bc3a20350f1/dadi-2.0.3.tar.gz#sha256=3c0259325ae9bdb803f310973d4624d0054e2afa9fae5a5d1fa6d31aaec637b7 (from https://pypi.org/simple/dadi/), version: 2.0.3 2021-01-28T21:23:17,913 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/3b/59/aef8d0105a55ea7024c0fdae8b5d981bc02ae2dce6c962a3ab5c838c87ee/dadi-2.0.4-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=0556c2f6d7f20e45ee485ee247661bf04f5613062bfa292d3e7e4625ebcd8571 (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,913 Found link https://files.pythonhosted.org/packages/67/b8/da1c9fa1e38411f1bfb4ef1df6405ed8adbc26ccca9f3f084f248a91cb70/dadi-2.0.4.tar.gz#sha256=e50112a06678f795155e963caf4800936399b231bb7d063e735d26357ec6f645 (from https://pypi.org/simple/dadi/), version: 2.0.4 2021-01-28T21:23:17,914 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/b9/12/7c937c7d55f57f519b15ae85b3a893915a91aeddeb86b60d204d9b8a0b95/dadi-2.0.5-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=addb28c6c845ea8380d98068e88ba009111aabc8a1f1d9e8de3bdccde39c92ff (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,914 Found link https://files.pythonhosted.org/packages/1d/79/b0703bf0a3bccfd46243719970c4c12ef9d25702c1c1f11a38cd858feeba/dadi-2.0.5.tar.gz#sha256=6a14fc996062bfd7bcfda5a08177458fc12dd2e14dda5d78f94e91db32d97b45 (from https://pypi.org/simple/dadi/), version: 2.0.5 2021-01-28T21:23:17,914 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/bf/ec/4028c2bc860bc5fd000757a85580f06d372cf0093ad3d69fc337f4e3638f/dadi-2.0.6-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=1711d2b5dbf96df7ee42e3b1e56f74eeec04b27b207b10c470984f0d98ffdb06 (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,915 Found link https://files.pythonhosted.org/packages/8f/37/bd2a39f621a56e9c48d8bfe234583e1de6548c78fb56ada775e0f660ecd4/dadi-2.0.6.tar.gz#sha256=41727bf965005f3345493eb53d424631a315768a3ba054530a7e13259c6e2a9c (from https://pypi.org/simple/dadi/), version: 2.0.6 2021-01-28T21:23:17,915 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/68/7a/555e1602617ed94760f124020cd81e93387a50111223161fa1aef70fc203/dadi-2.1.0-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=abe233ee9114b0f6a672ccedfdafe019cec46ab4006b86bf3e6d057ecd96784d (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,915 Found link https://files.pythonhosted.org/packages/ef/2d/b8636392a28b5d7fe2665a15ab9899651ed7e2af7264c8685e648371aa5c/dadi-2.1.0.tar.gz#sha256=97a15aa7ef501850cad4cff66b11b66ecb65d5d68acbf2ff713585c81c3a1038 (from https://pypi.org/simple/dadi/), version: 2.1.0 2021-01-28T21:23:17,916 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/a9/c7/ee88baf9a99dcca548908e6ecada3994098b18084ee3b796600b471eaa0c/dadi-2.1.1-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=d2f7e89226ffb60061d9baeaaf77725d0e8502a7a784af9c3b8b8d6e68f879f6 (from https://pypi.org/simple/dadi/) 2021-01-28T21:23:17,916 Found link https://files.pythonhosted.org/packages/ce/ab/d47b4d850b6974c0d1352547c8962facd2550225ddf2aa7aa6d96d73ec8d/dadi-2.1.1.tar.gz#sha256=d1d69568610ddf2f4283917825042c1ceafd4f23bcd06c628eef170bdb5271a2 (from https://pypi.org/simple/dadi/), version: 2.1.1 2021-01-28T21:23:17,918 Given no hashes to check 1 links for project 'dadi': discarding no candidates 2021-01-28T21:23:17,932 Collecting dadi==2.1.1 2021-01-28T21:23:17,933 Created temporary directory: /tmp/pip-unpack-2lnhtuvg 2021-01-28T21:23:17,973 Downloading dadi-2.1.1.tar.gz (1.6 MB) 2021-01-28T21:23:18,873 Added dadi==2.1.1 from https://files.pythonhosted.org/packages/ce/ab/d47b4d850b6974c0d1352547c8962facd2550225ddf2aa7aa6d96d73ec8d/dadi-2.1.1.tar.gz#sha256=d1d69568610ddf2f4283917825042c1ceafd4f23bcd06c628eef170bdb5271a2 to build tracker '/tmp/pip-req-tracker-t5vwhgch' 2021-01-28T21:23:18,874 Running setup.py (path:/tmp/pip-wheel-e4yafqbp/dadi_4ff4f9c410e54c61a201a3a4c26d3bd8/setup.py) egg_info for package dadi 2021-01-28T21:23:18,875 Created temporary directory: /tmp/pip-pip-egg-info-zzwzc9db 2021-01-28T21:23:18,875 Running command python setup.py egg_info 2021-01-28T21:23:20,375 running egg_info 2021-01-28T21:23:20,377 running build_src 2021-01-28T21:23:20,378 build_src 2021-01-28T21:23:20,379 building extension "dadi.tridiag" sources 2021-01-28T21:23:20,380 creating build 2021-01-28T21:23:20,380 creating build/src.linux-armv7l-3.7 2021-01-28T21:23:20,381 creating build/src.linux-armv7l-3.7/dadi 2021-01-28T21:23:20,382 f2py options: [] 2021-01-28T21:23:20,382 f2py: dadi/tridiag.pyf 2021-01-28T21:23:20,631 Reading fortran codes... 2021-01-28T21:23:20,631 Reading file 'dadi/tridiag.pyf' (format:free) 2021-01-28T21:23:20,631 Line #5 in dadi/tridiag.pyf:" intent(c) " 2021-01-28T21:23:20,632 All arguments will have attribute intent(c) 2021-01-28T21:23:20,632 Line #15 in dadi/tridiag.pyf:" intent(c) " 2021-01-28T21:23:20,632 All arguments will have attribute intent(c) 2021-01-28T21:23:20,632 Post-processing... 2021-01-28T21:23:20,633 Block: tridiag 2021-01-28T21:23:20,633 Block: tridiag 2021-01-28T21:23:20,633 Block: tridiag_fl 2021-01-28T21:23:20,633 Post-processing (stage 2)... 2021-01-28T21:23:20,633 Building modules... 2021-01-28T21:23:20,634 Building module "tridiag"... 2021-01-28T21:23:20,634 Constructing wrapper function "tridiag"... 2021-01-28T21:23:20,634 u = tridiag(a,b,c,r) 2021-01-28T21:23:20,634 Constructing wrapper function "tridiag_fl"... 2021-01-28T21:23:20,634 u = tridiag_fl(a,b,c,r) 2021-01-28T21:23:20,635 Wrote C/API module "tridiag" to file "build/src.linux-armv7l-3.7/dadi/tridiagmodule.c" 2021-01-28T21:23:20,635 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2021-01-28T21:23:20,635 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2021-01-28T21:23:20,635 creating build/src.linux-armv7l-3.7/build 2021-01-28T21:23:20,635 creating build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7 2021-01-28T21:23:20,636 creating build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2021-01-28T21:23:20,636 copying /usr/local/lib/python3.7/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2021-01-28T21:23:20,638 copying /usr/local/lib/python3.7/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2021-01-28T21:23:20,641 building extension "dadi.integration_c" sources 2021-01-28T21:23:20,642 f2py options: [] 2021-01-28T21:23:20,643 f2py: dadi/integration_c.pyf 2021-01-28T21:23:22,152 Reading fortran codes... 2021-01-28T21:23:22,152 Reading file 'dadi/integration_c.pyf' (format:free) 2021-01-28T21:23:22,152 Line #5 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,152 All arguments will have attribute intent(c) 2021-01-28T21:23:22,153 Line #18 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,153 All arguments will have attribute intent(c) 2021-01-28T21:23:22,153 Line #35 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,153 All arguments will have attribute intent(c) 2021-01-28T21:23:22,153 Line #52 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,154 All arguments will have attribute intent(c) 2021-01-28T21:23:22,154 Line #65 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,154 All arguments will have attribute intent(c) 2021-01-28T21:23:22,154 Line #78 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,154 All arguments will have attribute intent(c) 2021-01-28T21:23:22,155 Line #98 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,155 All arguments will have attribute intent(c) 2021-01-28T21:23:22,155 Line #118 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,155 All arguments will have attribute intent(c) 2021-01-28T21:23:22,155 Line #138 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,155 All arguments will have attribute intent(c) 2021-01-28T21:23:22,156 Line #152 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,156 All arguments will have attribute intent(c) 2021-01-28T21:23:22,156 Line #166 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,156 All arguments will have attribute intent(c) 2021-01-28T21:23:22,156 Line #180 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,156 All arguments will have attribute intent(c) 2021-01-28T21:23:22,157 Line #201 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,157 All arguments will have attribute intent(c) 2021-01-28T21:23:22,157 Line #222 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,157 All arguments will have attribute intent(c) 2021-01-28T21:23:22,157 Line #243 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,157 All arguments will have attribute intent(c) 2021-01-28T21:23:22,158 Line #264 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,158 All arguments will have attribute intent(c) 2021-01-28T21:23:22,158 Line #288 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,158 All arguments will have attribute intent(c) 2021-01-28T21:23:22,158 Line #312 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,158 All arguments will have attribute intent(c) 2021-01-28T21:23:22,158 Line #336 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,159 All arguments will have attribute intent(c) 2021-01-28T21:23:22,159 Line #360 in dadi/integration_c.pyf:" intent(c) " 2021-01-28T21:23:22,159 All arguments will have attribute intent(c) 2021-01-28T21:23:22,159 Post-processing... 2021-01-28T21:23:22,159 Block: integration_c 2021-01-28T21:23:22,159 Block: implicit_1Dx 2021-01-28T21:23:22,160 Block: implicit_2Dx 2021-01-28T21:23:22,160 Block: implicit_2Dy 2021-01-28T21:23:22,160 Block: implicit_precalc_2Dx 2021-01-28T21:23:22,160 Block: implicit_precalc_2Dy 2021-01-28T21:23:22,160 Block: implicit_3Dx 2021-01-28T21:23:22,160 Block: implicit_3Dy 2021-01-28T21:23:22,160 Block: implicit_3Dz 2021-01-28T21:23:22,161 Block: implicit_precalc_3Dx 2021-01-28T21:23:22,161 Block: implicit_precalc_3Dy 2021-01-28T21:23:22,161 Block: implicit_precalc_3Dz 2021-01-28T21:23:22,161 Block: implicit_4Dx 2021-01-28T21:23:22,161 Block: implicit_4Dy 2021-01-28T21:23:22,161 Block: implicit_4Dz 2021-01-28T21:23:22,162 Block: implicit_4Da 2021-01-28T21:23:22,162 Block: implicit_5Dx 2021-01-28T21:23:22,162 Block: implicit_5Dy 2021-01-28T21:23:22,162 Block: implicit_5Dz 2021-01-28T21:23:22,162 Block: implicit_5Da 2021-01-28T21:23:22,162 Block: implicit_5Db 2021-01-28T21:23:22,163 Post-processing (stage 2)... 2021-01-28T21:23:22,163 Building modules... 2021-01-28T21:23:22,163 Building module "integration_c"... 2021-01-28T21:23:22,163 Constructing wrapper function "implicit_1Dx"... 2021-01-28T21:23:22,163 phi = implicit_1Dx(phi,xx,nu,gamma,h,beta,dt,use_delj_trick) 2021-01-28T21:23:22,163 Constructing wrapper function "implicit_2Dx"... 2021-01-28T21:23:22,164 phi = implicit_2Dx(phi,xx,yy,nu1,m12,gamma1,h1,dt,use_delj_trick,[Mstart,Mend]) 2021-01-28T21:23:22,164 Constructing wrapper function "implicit_2Dy"... 2021-01-28T21:23:22,164 phi = implicit_2Dy(phi,xx,yy,nu2,m21,gamma2,h2,dt,use_delj_trick,[Lstart,Lend]) 2021-01-28T21:23:22,164 Constructing wrapper function "implicit_precalc_2Dx"... 2021-01-28T21:23:22,164 phi = implicit_precalc_2Dx(phi,ax,bx,cx,dt,[Mstart,Mend]) 2021-01-28T21:23:22,165 Constructing wrapper function "implicit_precalc_2Dy"... 2021-01-28T21:23:22,165 phi = implicit_precalc_2Dy(phi,ay,by,cy,dt,[Lstart,Lend]) 2021-01-28T21:23:22,165 Constructing wrapper function "implicit_3Dx"... 2021-01-28T21:23:22,165 phi = implicit_3Dx(phi,xx,yy,zz,nu1,m12,m13,gamma1,h1,dt,use_delj_trick,[Mstart,Mend]) 2021-01-28T21:23:22,165 Constructing wrapper function "implicit_3Dy"... 2021-01-28T21:23:22,165 phi = implicit_3Dy(phi,xx,yy,zz,nu2,m21,m23,gamma2,h2,dt,use_delj_trick,[Lstart,Lend]) 2021-01-28T21:23:22,166 Constructing wrapper function "implicit_3Dz"... 2021-01-28T21:23:22,166 phi = implicit_3Dz(phi,xx,yy,zz,nu3,m31,m32,gamma3,h3,dt,use_delj_trick,[Lstart,Lend]) 2021-01-28T21:23:22,166 Constructing wrapper function "implicit_precalc_3Dx"... 2021-01-28T21:23:22,166 phi = implicit_precalc_3Dx(phi,ax,bx,cx,dt,[Mstart,Mend]) 2021-01-28T21:23:22,166 Constructing wrapper function "implicit_precalc_3Dy"... 2021-01-28T21:23:22,167 phi = implicit_precalc_3Dy(phi,ay,by,cy,dt,[Lstart,Lend]) 2021-01-28T21:23:22,167 Constructing wrapper function "implicit_precalc_3Dz"... 2021-01-28T21:23:22,167 phi = implicit_precalc_3Dz(phi,az,bz,cz,dt,[Lstart,Lend]) 2021-01-28T21:23:22,167 Constructing wrapper function "implicit_4Dx"... 2021-01-28T21:23:22,167 phi = implicit_4Dx(phi,xx,yy,zz,aa,nu1,m12,m13,m14,gamma1,h1,dt,use_delj_trick) 2021-01-28T21:23:22,167 Constructing wrapper function "implicit_4Dy"... 2021-01-28T21:23:22,168 phi = implicit_4Dy(phi,xx,yy,zz,aa,nu2,m21,m23,m24,gamma2,h2,dt,use_delj_trick) 2021-01-28T21:23:22,168 Constructing wrapper function "implicit_4Dz"... 2021-01-28T21:23:22,168 phi = implicit_4Dz(phi,xx,yy,zz,aa,nu3,m31,m32,m34,gamma3,h3,dt,use_delj_trick) 2021-01-28T21:23:22,168 Constructing wrapper function "implicit_4Da"... 2021-01-28T21:23:22,168 phi = implicit_4Da(phi,xx,yy,zz,aa,nu4,m41,m42,m43,gamma4,h4,dt,use_delj_trick) 2021-01-28T21:23:22,168 Constructing wrapper function "implicit_5Dx"... 2021-01-28T21:23:22,169 phi = implicit_5Dx(phi,xx,yy,zz,aa,bb,nu1,m12,m13,m14,m15,gamma1,h1,dt,use_delj_trick) 2021-01-28T21:23:22,169 Constructing wrapper function "implicit_5Dy"... 2021-01-28T21:23:22,169 phi = implicit_5Dy(phi,xx,yy,zz,aa,bb,nu2,m21,m23,m24,m25,gamma2,h2,dt,use_delj_trick) 2021-01-28T21:23:22,169 Constructing wrapper function "implicit_5Dz"... 2021-01-28T21:23:22,169 phi = implicit_5Dz(phi,xx,yy,zz,aa,bb,nu3,m31,m32,m34,m35,gamma3,h3,dt,use_delj_trick) 2021-01-28T21:23:22,169 Constructing wrapper function "implicit_5Da"... 2021-01-28T21:23:22,170 phi = implicit_5Da(phi,xx,yy,zz,aa,bb,nu4,m41,m42,m43,m45,gamma4,h4,dt,use_delj_trick) 2021-01-28T21:23:22,170 Constructing wrapper function "implicit_5Db"... 2021-01-28T21:23:22,170 phi = implicit_5Db(phi,xx,yy,zz,aa,bb,nu5,m51,m52,m53,m54,gamma5,h5,dt,use_delj_trick) 2021-01-28T21:23:22,170 Wrote C/API module "integration_c" to file "build/src.linux-armv7l-3.7/dadi/integration_cmodule.c" 2021-01-28T21:23:22,170 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2021-01-28T21:23:22,171 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2021-01-28T21:23:22,171 building extension "dadi.DFE.PDFs_c" sources 2021-01-28T21:23:22,171 creating build/src.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:22,171 f2py options: [] 2021-01-28T21:23:22,171 f2py: dadi/DFE/PDFs.pyf 2021-01-28T21:23:22,281 Reading fortran codes... 2021-01-28T21:23:22,282 Reading file 'dadi/DFE/PDFs.pyf' (format:free) 2021-01-28T21:23:22,282 Line #5 in dadi/DFE/PDFs.pyf:" intent(c) " 2021-01-28T21:23:22,282 All arguments will have attribute intent(c) 2021-01-28T21:23:22,282 Line #16 in dadi/DFE/PDFs.pyf:" intent(c) " 2021-01-28T21:23:22,283 All arguments will have attribute intent(c) 2021-01-28T21:23:22,283 Line #22 in dadi/DFE/PDFs.pyf:" intent(c) " 2021-01-28T21:23:22,283 All arguments will have attribute intent(c) 2021-01-28T21:23:22,283 Post-processing... 2021-01-28T21:23:22,283 Block: PDFs_c 2021-01-28T21:23:22,283 Block: biv_lognormal 2021-01-28T21:23:22,284 Block: gamma_func 2021-01-28T21:23:22,284 Block: biv_ind_gamma 2021-01-28T21:23:22,284 Post-processing (stage 2)... 2021-01-28T21:23:22,284 Building modules... 2021-01-28T21:23:22,284 Building module "PDFs_c"... 2021-01-28T21:23:22,284 Constructing wrapper function "biv_lognormal"... 2021-01-28T21:23:22,285 output = biv_lognormal(xx,yy,params) 2021-01-28T21:23:22,285 Constructing wrapper function "gamma_func"... 2021-01-28T21:23:22,285 y = gamma_func(z) 2021-01-28T21:23:22,285 Constructing wrapper function "biv_ind_gamma"... 2021-01-28T21:23:22,285 output = biv_ind_gamma(xx,yy,params) 2021-01-28T21:23:22,286 Wrote C/API module "PDFs_c" to file "build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c" 2021-01-28T21:23:22,286 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.c' to sources. 2021-01-28T21:23:22,286 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE' to include_dirs. 2021-01-28T21:23:22,286 creating build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:22,286 copying /usr/local/lib/python3.7/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:22,287 copying /usr/local/lib/python3.7/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:22,289 build_src: building npy-pkg config files 2021-01-28T21:23:22,291 creating /tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info 2021-01-28T21:23:22,292 writing /tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info/PKG-INFO 2021-01-28T21:23:22,294 writing dependency_links to /tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info/dependency_links.txt 2021-01-28T21:23:22,296 writing requirements to /tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info/requires.txt 2021-01-28T21:23:22,298 writing top-level names to /tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info/top_level.txt 2021-01-28T21:23:22,300 writing manifest file '/tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info/SOURCES.txt' 2021-01-28T21:23:22,318 reading manifest file '/tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info/SOURCES.txt' 2021-01-28T21:23:22,319 reading manifest template 'MANIFEST.in' 2021-01-28T21:23:22,395 warning: no files found matching 'manual.pdf' under directory 'doc' 2021-01-28T21:23:22,396 warning: no files found matching '*.tex' under directory 'doc' 2021-01-28T21:23:22,396 warning: no files found matching '*.bib' under directory 'doc' 2021-01-28T21:23:22,497 warning: no previously-included files matching '*.msout' found anywhere in distribution 2021-01-28T21:23:22,498 warning: no previously-included files matching '*.swp' found anywhere in distribution 2021-01-28T21:23:22,499 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-01-28T21:23:22,500 warning: no previously-included files matching 'seedms' found anywhere in distribution 2021-01-28T21:23:22,501 warning: no previously-included files matching '*.png' found anywhere in distribution 2021-01-28T21:23:22,502 warning: no previously-included files matching '*.bpkl' found anywhere in distribution 2021-01-28T21:23:22,503 warning: no previously-included files matching '*.npz' found anywhere in distribution 2021-01-28T21:23:22,505 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-01-28T21:23:22,506 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2021-01-28T21:23:22,517 writing manifest file '/tmp/pip-pip-egg-info-zzwzc9db/dadi.egg-info/SOURCES.txt' 2021-01-28T21:23:22,519 appenddecl: "intent" not implemented. 2021-01-28T21:23:22,650 Source in /tmp/pip-wheel-e4yafqbp/dadi_4ff4f9c410e54c61a201a3a4c26d3bd8 has version 2.1.1, which satisfies requirement dadi==2.1.1 from https://files.pythonhosted.org/packages/ce/ab/d47b4d850b6974c0d1352547c8962facd2550225ddf2aa7aa6d96d73ec8d/dadi-2.1.1.tar.gz#sha256=d1d69568610ddf2f4283917825042c1ceafd4f23bcd06c628eef170bdb5271a2 2021-01-28T21:23:22,651 Removed dadi==2.1.1 from https://files.pythonhosted.org/packages/ce/ab/d47b4d850b6974c0d1352547c8962facd2550225ddf2aa7aa6d96d73ec8d/dadi-2.1.1.tar.gz#sha256=d1d69568610ddf2f4283917825042c1ceafd4f23bcd06c628eef170bdb5271a2 from build tracker '/tmp/pip-req-tracker-t5vwhgch' 2021-01-28T21:23:22,655 Created temporary directory: /tmp/pip-unpack-3m3ozpcy 2021-01-28T21:23:22,656 Building wheels for collected packages: dadi 2021-01-28T21:23:22,660 Created temporary directory: /tmp/pip-wheel-snh9zst7 2021-01-28T21:23:22,660 Building wheel for dadi (setup.py): started 2021-01-28T21:23:22,661 Destination directory: /tmp/pip-wheel-snh9zst7 2021-01-28T21:23:22,661 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e4yafqbp/dadi_4ff4f9c410e54c61a201a3a4c26d3bd8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e4yafqbp/dadi_4ff4f9c410e54c61a201a3a4c26d3bd8/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-snh9zst7 2021-01-28T21:23:24,085 running bdist_wheel 2021-01-28T21:23:24,085 running build 2021-01-28T21:23:24,086 running config_cc 2021-01-28T21:23:24,086 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-01-28T21:23:24,086 running config_fc 2021-01-28T21:23:24,087 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-01-28T21:23:24,087 running build_src 2021-01-28T21:23:24,087 build_src 2021-01-28T21:23:24,087 building extension "dadi.tridiag" sources 2021-01-28T21:23:24,088 f2py options: [] 2021-01-28T21:23:24,088 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2021-01-28T21:23:24,088 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2021-01-28T21:23:24,211 building extension "dadi.integration_c" sources 2021-01-28T21:23:24,212 f2py options: [] 2021-01-28T21:23:24,212 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2021-01-28T21:23:24,212 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2021-01-28T21:23:24,212 building extension "dadi.DFE.PDFs_c" sources 2021-01-28T21:23:24,213 f2py options: [] 2021-01-28T21:23:24,213 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.c' to sources. 2021-01-28T21:23:24,213 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE' to include_dirs. 2021-01-28T21:23:24,214 build_src: building npy-pkg config files 2021-01-28T21:23:24,215 running build_py 2021-01-28T21:23:24,220 creating build/lib.linux-armv7l-3.7 2021-01-28T21:23:24,220 creating build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,222 copying dadi/Godambe.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,225 copying dadi/Numerics.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,228 copying dadi/Demographics2D.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,231 copying dadi/PhiManip.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,234 copying dadi/Inference.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,239 copying dadi/Demographics1D.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,241 copying dadi/Spectrum_mod.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,247 copying dadi/NLopt_mod.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,250 copying dadi/Plotting.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,253 copying dadi/Integration.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,257 copying dadi/Misc.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,261 copying dadi/__init__.py -> build/lib.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,265 creating build/lib.linux-armv7l-3.7/dadi/Triallele 2021-01-28T21:23:24,266 copying dadi/Triallele/demographics.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2021-01-28T21:23:24,270 copying dadi/Triallele/TriSpectrum_mod.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2021-01-28T21:23:24,273 copying dadi/Triallele/plotting.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2021-01-28T21:23:24,276 copying dadi/Triallele/__init__.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2021-01-28T21:23:24,279 copying dadi/Triallele/numerics.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2021-01-28T21:23:24,282 copying dadi/Triallele/integration.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2021-01-28T21:23:24,286 creating build/lib.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:24,288 copying dadi/DFE/DemogSelModels.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:24,291 copying dadi/DFE/Cache2D_mod.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:24,294 copying dadi/DFE/Cache1D_mod.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:24,297 copying dadi/DFE/Plotting.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:24,300 copying dadi/DFE/__init__.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:24,303 copying dadi/DFE/PDFs.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:24,306 creating build/lib.linux-armv7l-3.7/dadi/cuda 2021-01-28T21:23:24,307 copying dadi/cuda/kernels.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2021-01-28T21:23:24,310 copying dadi/cuda/cusparse.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2021-01-28T21:23:24,314 copying dadi/cuda/Integration.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2021-01-28T21:23:24,318 copying dadi/cuda/__init__.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2021-01-28T21:23:24,321 creating build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,322 copying dadi/TwoLocus/demographics.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,325 copying dadi/TwoLocus/inference.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,329 copying dadi/TwoLocus/plotting.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,332 copying dadi/TwoLocus/__init__.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,335 copying dadi/TwoLocus/TLSpectrum_mod.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,338 copying dadi/TwoLocus/numerics.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,343 copying dadi/TwoLocus/integration.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2021-01-28T21:23:24,346 copying dadi/cuda/kernels.cu -> build/lib.linux-armv7l-3.7/dadi/cuda 2021-01-28T21:23:24,354 running build_ext 2021-01-28T21:23:24,361 customize UnixCCompiler 2021-01-28T21:23:24,364 customize UnixCCompiler using build_ext 2021-01-28T21:23:24,366 building 'dadi.tridiag' extension 2021-01-28T21:23:24,367 compiling C sources 2021-01-28T21:23:24,368 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-01-28T21:23:24,369 creating build/temp.linux-armv7l-3.7/build 2021-01-28T21:23:24,370 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7 2021-01-28T21:23:24,371 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,373 creating build/temp.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,374 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build 2021-01-28T21:23:24,375 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7 2021-01-28T21:23:24,376 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2021-01-28T21:23:24,377 compile options: '-Ibuild/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c' 2021-01-28T21:23:24,392 arm-linux-gnueabihf-gcc: dadi/tridiag.carm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c 2021-01-28T21:23:24,392 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/dadi/tridiagmodule.c 2021-01-28T21:23:24,796 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-01-28T21:23:24,796 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-28T21:23:24,796 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-28T21:23:24,796 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.h:13, 2021-01-28T21:23:24,797 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c:2: 2021-01-28T21:23:24,797 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-28T21:23:24,797 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-28T21:23:24,798 ^~~~~~~ 2021-01-28T21:23:24,798 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-01-28T21:23:24,798 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-28T21:23:24,798 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-28T21:23:24,798 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.h:13, 2021-01-28T21:23:24,799 from build/src.linux-armv7l-3.7/dadi/tridiagmodule.c:16: 2021-01-28T21:23:24,799 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-28T21:23:24,799 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-28T21:23:24,799 ^~~~~~~ 2021-01-28T21:23:24,858 build/src.linux-armv7l-3.7/dadi/tridiagmodule.c:102:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-01-28T21:23:24,858 static int f2py_size(PyArrayObject* var, ...) 2021-01-28T21:23:24,859 ^~~~~~~~~ 2021-01-28T21:23:25,907 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/tridiagmodule.o build/temp.linux-armv7l-3.7/dadi/tridiag.o build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.o -o build/lib.linux-armv7l-3.7/dadi/tridiag.cpython-37m-arm-linux-gnueabihf.so 2021-01-28T21:23:26,046 building 'dadi.integration_c' extension 2021-01-28T21:23:26,046 compiling C sources 2021-01-28T21:23:26,046 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-01-28T21:23:26,047 compile options: '-Ibuild/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c' 2021-01-28T21:23:26,050 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/dadi/integration_cmodule.carm-linux-gnueabihf-gcc: dadi/integration1D.c 2021-01-28T21:23:26,050 arm-linux-gnueabihf-gcc: dadi/integration3D.c 2021-01-28T21:23:26,057 arm-linux-gnueabihf-gcc: dadi/integration2D.c 2021-01-28T21:23:26,336 arm-linux-gnueabihf-gcc: dadi/integration4D.c 2021-01-28T21:23:26,499 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-01-28T21:23:26,499 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-28T21:23:26,500 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-28T21:23:26,500 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.h:13, 2021-01-28T21:23:26,501 from build/src.linux-armv7l-3.7/dadi/integration_cmodule.c:16: 2021-01-28T21:23:26,501 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-28T21:23:26,501 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-28T21:23:26,502 ^~~~~~~ 2021-01-28T21:23:26,617 arm-linux-gnueabihf-gcc: dadi/integration5D.c 2021-01-28T21:23:26,720 build/src.linux-armv7l-3.7/dadi/integration_cmodule.c:102:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-01-28T21:23:26,721 static int f2py_size(PyArrayObject* var, ...) 2021-01-28T21:23:26,721 ^~~~~~~~~ 2021-01-28T21:23:26,996 arm-linux-gnueabihf-gcc: dadi/integration_shared.c 2021-01-28T21:23:30,102 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/integration_cmodule.o build/temp.linux-armv7l-3.7/dadi/integration1D.o build/temp.linux-armv7l-3.7/dadi/integration2D.o build/temp.linux-armv7l-3.7/dadi/integration3D.o build/temp.linux-armv7l-3.7/dadi/integration4D.o build/temp.linux-armv7l-3.7/dadi/integration5D.o build/temp.linux-armv7l-3.7/dadi/integration_shared.o build/temp.linux-armv7l-3.7/dadi/tridiag.o build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.o -o build/lib.linux-armv7l-3.7/dadi/integration_c.cpython-37m-arm-linux-gnueabihf.so 2021-01-28T21:23:30,266 building 'dadi.DFE.PDFs_c' extension 2021-01-28T21:23:30,267 compiling C sources 2021-01-28T21:23:30,268 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-01-28T21:23:30,268 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:30,269 creating build/temp.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:30,269 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2021-01-28T21:23:30,269 compile options: '-Ibuild/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c' 2021-01-28T21:23:30,274 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c 2021-01-28T21:23:30,282 arm-linux-gnueabihf-gcc: dadi/DFE/PDFs.c 2021-01-28T21:23:30,282 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.c 2021-01-28T21:23:30,428 dadi/DFE/PDFs.c:4: warning: "M_PI" redefined 2021-01-28T21:23:30,429 #define M_PI 3.14159265358979323846264338327950288 2021-01-28T21:23:30,429 In file included from dadi/DFE/PDFs.c:2: 2021-01-28T21:23:30,430 /usr/include/math.h:1065: note: this is the location of the previous definition 2021-01-28T21:23:30,430 # define M_PI 3.14159265358979323846 /* pi */ 2021-01-28T21:23:30,652 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-01-28T21:23:30,653 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-28T21:23:30,653 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-28T21:23:30,653 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.h:13, 2021-01-28T21:23:30,654 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.c:2: 2021-01-28T21:23:30,654 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-28T21:23:30,654 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-28T21:23:30,655 ^~~~~~~ 2021-01-28T21:23:30,656 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-01-28T21:23:30,656 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-01-28T21:23:30,656 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-01-28T21:23:30,656 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.h:13, 2021-01-28T21:23:30,657 from build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c:16: 2021-01-28T21:23:30,657 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-01-28T21:23:30,657 #warning "Using deprecated NumPy API, disable it with " \ 2021-01-28T21:23:30,657 ^~~~~~~ 2021-01-28T21:23:30,712 build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c:102:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-01-28T21:23:30,713 static int f2py_size(PyArrayObject* var, ...) 2021-01-28T21:23:30,713 ^~~~~~~~~ 2021-01-28T21:23:31,769 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.o build/temp.linux-armv7l-3.7/dadi/DFE/PDFs.o build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.o -o build/lib.linux-armv7l-3.7/dadi/DFE/PDFs_c.cpython-37m-arm-linux-gnueabihf.so 2021-01-28T21:23:31,907 installing to build/bdist.linux-armv7l/wheel 2021-01-28T21:23:31,907 running install 2021-01-28T21:23:31,908 running install_lib 2021-01-28T21:23:31,913 creating build/bdist.linux-armv7l 2021-01-28T21:23:31,913 creating build/bdist.linux-armv7l/wheel 2021-01-28T21:23:31,915 creating build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,917 copying build/lib.linux-armv7l-3.7/dadi/Godambe.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,920 copying build/lib.linux-armv7l-3.7/dadi/Numerics.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,923 copying build/lib.linux-armv7l-3.7/dadi/Demographics2D.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,926 copying build/lib.linux-armv7l-3.7/dadi/PhiManip.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,929 copying build/lib.linux-armv7l-3.7/dadi/tridiag.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,936 creating build/bdist.linux-armv7l/wheel/dadi/Triallele 2021-01-28T21:23:31,937 copying build/lib.linux-armv7l-3.7/dadi/Triallele/demographics.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2021-01-28T21:23:31,940 copying build/lib.linux-armv7l-3.7/dadi/Triallele/TriSpectrum_mod.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2021-01-28T21:23:31,943 copying build/lib.linux-armv7l-3.7/dadi/Triallele/plotting.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2021-01-28T21:23:31,946 copying build/lib.linux-armv7l-3.7/dadi/Triallele/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2021-01-28T21:23:31,949 copying build/lib.linux-armv7l-3.7/dadi/Triallele/numerics.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2021-01-28T21:23:31,952 copying build/lib.linux-armv7l-3.7/dadi/Triallele/integration.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2021-01-28T21:23:31,955 copying build/lib.linux-armv7l-3.7/dadi/Inference.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,959 copying build/lib.linux-armv7l-3.7/dadi/Demographics1D.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,962 copying build/lib.linux-armv7l-3.7/dadi/Spectrum_mod.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,968 copying build/lib.linux-armv7l-3.7/dadi/NLopt_mod.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,970 copying build/lib.linux-armv7l-3.7/dadi/integration_c.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,987 copying build/lib.linux-armv7l-3.7/dadi/Plotting.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,990 copying build/lib.linux-armv7l-3.7/dadi/Integration.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,994 copying build/lib.linux-armv7l-3.7/dadi/Misc.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:31,998 copying build/lib.linux-armv7l-3.7/dadi/__init__.py -> build/bdist.linux-armv7l/wheel/dadi 2021-01-28T21:23:32,001 creating build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,002 copying build/lib.linux-armv7l-3.7/dadi/DFE/DemogSelModels.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,005 copying build/lib.linux-armv7l-3.7/dadi/DFE/Cache2D_mod.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,008 copying build/lib.linux-armv7l-3.7/dadi/DFE/PDFs_c.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,016 copying build/lib.linux-armv7l-3.7/dadi/DFE/Cache1D_mod.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,019 copying build/lib.linux-armv7l-3.7/dadi/DFE/Plotting.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,022 copying build/lib.linux-armv7l-3.7/dadi/DFE/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,025 copying build/lib.linux-armv7l-3.7/dadi/DFE/PDFs.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2021-01-28T21:23:32,028 creating build/bdist.linux-armv7l/wheel/dadi/cuda 2021-01-28T21:23:32,029 copying build/lib.linux-armv7l-3.7/dadi/cuda/kernels.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2021-01-28T21:23:32,031 copying build/lib.linux-armv7l-3.7/dadi/cuda/cusparse.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2021-01-28T21:23:32,034 copying build/lib.linux-armv7l-3.7/dadi/cuda/Integration.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2021-01-28T21:23:32,039 copying build/lib.linux-armv7l-3.7/dadi/cuda/kernels.cu -> build/bdist.linux-armv7l/wheel/dadi/cuda 2021-01-28T21:23:32,041 copying build/lib.linux-armv7l-3.7/dadi/cuda/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2021-01-28T21:23:32,044 creating build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,046 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/demographics.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,048 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/inference.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,051 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/plotting.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,054 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,057 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/TLSpectrum_mod.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,060 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/numerics.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,065 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/integration.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2021-01-28T21:23:32,067 running install_egg_info 2021-01-28T21:23:32,072 running egg_info 2021-01-28T21:23:32,073 writing dadi.egg-info/PKG-INFO 2021-01-28T21:23:32,076 writing dependency_links to dadi.egg-info/dependency_links.txt 2021-01-28T21:23:32,078 writing requirements to dadi.egg-info/requires.txt 2021-01-28T21:23:32,079 writing top-level names to dadi.egg-info/top_level.txt 2021-01-28T21:23:32,103 reading manifest file 'dadi.egg-info/SOURCES.txt' 2021-01-28T21:23:32,147 reading manifest template 'MANIFEST.in' 2021-01-28T21:23:32,224 warning: no files found matching 'manual.pdf' under directory 'doc' 2021-01-28T21:23:32,224 warning: no files found matching '*.tex' under directory 'doc' 2021-01-28T21:23:32,224 warning: no files found matching '*.bib' under directory 'doc' 2021-01-28T21:23:32,311 warning: no previously-included files matching '*.msout' found anywhere in distribution 2021-01-28T21:23:32,313 warning: no previously-included files matching '*.swp' found anywhere in distribution 2021-01-28T21:23:32,315 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-01-28T21:23:32,316 warning: no previously-included files matching 'seedms' found anywhere in distribution 2021-01-28T21:23:32,318 warning: no previously-included files matching '*.png' found anywhere in distribution 2021-01-28T21:23:32,319 warning: no previously-included files matching '*.bpkl' found anywhere in distribution 2021-01-28T21:23:32,321 warning: no previously-included files matching '*.npz' found anywhere in distribution 2021-01-28T21:23:32,322 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-01-28T21:23:32,324 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2021-01-28T21:23:32,339 writing manifest file 'dadi.egg-info/SOURCES.txt' 2021-01-28T21:23:32,341 Copying dadi.egg-info to build/bdist.linux-armv7l/wheel/dadi-2.1.1-py3.7.egg-info 2021-01-28T21:23:32,352 running install_scripts 2021-01-28T21:23:32,352 running install_clib 2021-01-28T21:23:32,352 customize UnixCCompiler 2021-01-28T21:23:32,377 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-01-28T21:23:32,383 creating build/bdist.linux-armv7l/wheel/dadi-2.1.1.dist-info/WHEEL 2021-01-28T21:23:32,385 creating '/tmp/pip-wheel-snh9zst7/dadi-2.1.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-01-28T21:23:32,389 adding 'dadi/Demographics1D.py' 2021-01-28T21:23:32,390 adding 'dadi/Demographics2D.py' 2021-01-28T21:23:32,394 adding 'dadi/Godambe.py' 2021-01-28T21:23:32,399 adding 'dadi/Inference.py' 2021-01-28T21:23:32,405 adding 'dadi/Integration.py' 2021-01-28T21:23:32,411 adding 'dadi/Misc.py' 2021-01-28T21:23:32,413 adding 'dadi/NLopt_mod.py' 2021-01-28T21:23:32,417 adding 'dadi/Numerics.py' 2021-01-28T21:23:32,421 adding 'dadi/PhiManip.py' 2021-01-28T21:23:32,425 adding 'dadi/Plotting.py' 2021-01-28T21:23:32,437 adding 'dadi/Spectrum_mod.py' 2021-01-28T21:23:32,439 adding 'dadi/__init__.py' 2021-01-28T21:23:32,513 adding 'dadi/integration_c.cpython-37m-arm-linux-gnueabihf.so' 2021-01-28T21:23:32,543 adding 'dadi/tridiag.cpython-37m-arm-linux-gnueabihf.so' 2021-01-28T21:23:32,546 adding 'dadi/DFE/Cache1D_mod.py' 2021-01-28T21:23:32,549 adding 'dadi/DFE/Cache2D_mod.py' 2021-01-28T21:23:32,550 adding 'dadi/DFE/DemogSelModels.py' 2021-01-28T21:23:32,552 adding 'dadi/DFE/PDFs.py' 2021-01-28T21:23:32,581 adding 'dadi/DFE/PDFs_c.cpython-37m-arm-linux-gnueabihf.so' 2021-01-28T21:23:32,584 adding 'dadi/DFE/Plotting.py' 2021-01-28T21:23:32,585 adding 'dadi/DFE/__init__.py' 2021-01-28T21:23:32,588 adding 'dadi/Triallele/TriSpectrum_mod.py' 2021-01-28T21:23:32,590 adding 'dadi/Triallele/__init__.py' 2021-01-28T21:23:32,591 adding 'dadi/Triallele/demographics.py' 2021-01-28T21:23:32,593 adding 'dadi/Triallele/integration.py' 2021-01-28T21:23:32,596 adding 'dadi/Triallele/numerics.py' 2021-01-28T21:23:32,598 adding 'dadi/Triallele/plotting.py' 2021-01-28T21:23:32,601 adding 'dadi/TwoLocus/TLSpectrum_mod.py' 2021-01-28T21:23:32,603 adding 'dadi/TwoLocus/__init__.py' 2021-01-28T21:23:32,604 adding 'dadi/TwoLocus/demographics.py' 2021-01-28T21:23:32,606 adding 'dadi/TwoLocus/inference.py' 2021-01-28T21:23:32,608 adding 'dadi/TwoLocus/integration.py' 2021-01-28T21:23:32,616 adding 'dadi/TwoLocus/numerics.py' 2021-01-28T21:23:32,618 adding 'dadi/TwoLocus/plotting.py' 2021-01-28T21:23:32,622 adding 'dadi/cuda/Integration.py' 2021-01-28T21:23:32,624 adding 'dadi/cuda/__init__.py' 2021-01-28T21:23:32,627 adding 'dadi/cuda/cusparse.py' 2021-01-28T21:23:32,628 adding 'dadi/cuda/kernels.cu' 2021-01-28T21:23:32,629 adding 'dadi/cuda/kernels.py' 2021-01-28T21:23:32,632 adding 'dadi-2.1.1.dist-info/LICENSE.txt' 2021-01-28T21:23:32,633 adding 'dadi-2.1.1.dist-info/METADATA' 2021-01-28T21:23:32,634 adding 'dadi-2.1.1.dist-info/WHEEL' 2021-01-28T21:23:32,635 adding 'dadi-2.1.1.dist-info/top_level.txt' 2021-01-28T21:23:32,636 adding 'dadi-2.1.1.dist-info/RECORD' 2021-01-28T21:23:32,644 removing build/bdist.linux-armv7l/wheel 2021-01-28T21:23:32,797 Building wheel for dadi (setup.py): finished with status 'done' 2021-01-28T21:23:32,804 Created wheel for dadi: filename=dadi-2.1.1-cp37-cp37m-linux_armv7l.whl size=419462 sha256=ff14e3da011d24125ed2957d107e760c25c513c9754454dc9c112dc6b22ddd32 2021-01-28T21:23:32,804 Stored in directory: /tmp/pip-ephem-wheel-cache-ydlrt8cw/wheels/2c/a2/2f/ce806786b21ce4e9fd03eb481a37cce69d5d67916a55db887f 2021-01-28T21:23:32,815 Successfully built dadi 2021-01-28T21:23:32,836 Removed build tracker: '/tmp/pip-req-tracker-t5vwhgch'