2021-01-29T17:03:01,274 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-01-29T17:03:02,089 Created temporary directory: /tmp/pip-ephem-wheel-cache-jw9n35zi
2021-01-29T17:03:02,094 Created temporary directory: /tmp/pip-req-tracker-lragw5c2
2021-01-29T17:03:02,095 Initialized build tracking at /tmp/pip-req-tracker-lragw5c2
2021-01-29T17:03:02,096 Created build tracker: /tmp/pip-req-tracker-lragw5c2
2021-01-29T17:03:02,097 Entered build tracker: /tmp/pip-req-tracker-lragw5c2
2021-01-29T17:03:02,099 Created temporary directory: /tmp/pip-wheel-6_d0yk_v
2021-01-29T17:03:02,179 1 location(s) to search for versions of dark-matter:
2021-01-29T17:03:02,179 * https://pypi.org/simple/dark-matter/
2021-01-29T17:03:02,180 Fetching project page and analyzing links: https://pypi.org/simple/dark-matter/
2021-01-29T17:03:02,183 Getting page https://pypi.org/simple/dark-matter/
2021-01-29T17:03:02,188 Found index url https://pypi.org/simple
2021-01-29T17:03:02,872   Found link https://files.pythonhosted.org/packages/7a/5d/5704534d2e83673ec3c8534b39fe1a3f071291761d421803f6b2f04ca6b3/dark-matter-1.0.0.tar.gz#sha256=e915679610d0e94ca32b047d9ef8db6bb16aca43edbba1f7ea13d8f9a00b77d7 (from https://pypi.org/simple/dark-matter/), version: 1.0.0
2021-01-29T17:03:02,874   Found link https://files.pythonhosted.org/packages/4a/50/cc5fbbe75b550d6819af04e15ffc633d99b636f2e2d3c22ca4fc09ba2380/dark-matter-1.0.11.tar.gz#sha256=4157ac389269821b5c3a2de3b32922bf437df79e858f2ae8c7293479d393c90b (from https://pypi.org/simple/dark-matter/), version: 1.0.11
2021-01-29T17:03:02,875   Found link https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 (from https://pypi.org/simple/dark-matter/), version: 1.0.12
2021-01-29T17:03:02,875   Found link https://files.pythonhosted.org/packages/42/69/f0d13d1e43ec50d1ca85b70c27cc5333f85186668700544a7661c4d6d374/dark-matter-1.0.13.tar.gz#sha256=4b061448407711cab985c60762244028d74b32a322d7329a63138e4080d110d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.13
2021-01-29T17:03:02,876   Found link https://files.pythonhosted.org/packages/30/5a/9c56b0639b13c2c78cad8ac304e9c5d834eed0cab07d0dcd780b7be47249/dark-matter-1.0.16.tar.gz#sha256=c0c11585b9a71c47aa248794779111a9ab30c48e32e17540f95347d98ce116a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.16
2021-01-29T17:03:02,877   Found link https://files.pythonhosted.org/packages/26/8d/eb629def26e051253c4070e70dfc7c8258d513b2685fe4e92bb975b6e613/dark-matter-1.0.19.tar.gz#sha256=4944ba9c898e0b956b6a8c0b8e78e5aa91579ac469885c61e70d71e89f92883d (from https://pypi.org/simple/dark-matter/), version: 1.0.19
2021-01-29T17:03:02,878   Found link https://files.pythonhosted.org/packages/6d/6f/755f4b72e91ce15571d5884761d34627eba8dc173005bc8d41a2e4d2ec81/dark-matter-1.0.27.tar.gz#sha256=70b765fdc0932137cb1ee2b9183018261c218fd27c87a3f3ab5fabb93a9d0e3c (from https://pypi.org/simple/dark-matter/), version: 1.0.27
2021-01-29T17:03:02,879   Found link https://files.pythonhosted.org/packages/c1/41/a8cb27f9a68dd388473a594c0a5cb162fb1518d16197c357ec3617e9631c/dark-matter-1.0.32.tar.gz#sha256=405b6a4a51ac4c1660435c882fb548d1e6ad1a889779b3893bddf5f876732eef (from https://pypi.org/simple/dark-matter/), version: 1.0.32
2021-01-29T17:03:02,880   Found link https://files.pythonhosted.org/packages/26/f5/ea2b1d090cd00bb769d4e07cc4b697373c58dac65a52cf442a4f60a833ba/dark-matter-1.0.34.tar.gz#sha256=8fe1d83a0b0476164c5a4ca8197890e1936ed0d66a689870a71676a14f671539 (from https://pypi.org/simple/dark-matter/), version: 1.0.34
2021-01-29T17:03:02,881   Found link https://files.pythonhosted.org/packages/1d/a3/954c4ab15080556dbb33a1c2053ce9028b51cb160099978332b9252b5f93/dark-matter-1.0.36.tar.gz#sha256=9f639deedd5d4e4da0276c9a6780288c5d78e95b0c5b69d08b312ed10cc10d25 (from https://pypi.org/simple/dark-matter/), version: 1.0.36
2021-01-29T17:03:02,882   Found link https://files.pythonhosted.org/packages/fd/f7/352dcf1f8fb13001175a73acb52fff4bc20760300f87459d7e1e967823a1/dark-matter-1.0.38.tar.gz#sha256=b506f4177d9334da17c7fdd2054944851b96c3872be6d00cd5ece2de2ddc7d82 (from https://pypi.org/simple/dark-matter/), version: 1.0.38
2021-01-29T17:03:02,883   Found link https://files.pythonhosted.org/packages/17/94/5d0c424a52cc3d16793cef2a6b38a8a3542c4bda072c49d61efd18a1ec60/dark-matter-1.0.40.tar.gz#sha256=6e38036fc94ef7817c18d607b937b916ef1caafe40fe072d4748306b2e646a1f (from https://pypi.org/simple/dark-matter/), version: 1.0.40
2021-01-29T17:03:02,884   Found link https://files.pythonhosted.org/packages/4c/d7/9fa11fcb1f9923e3e980f1b493791ca3fbe6920a68a939971fb1eb333d05/dark-matter-1.0.41.tar.gz#sha256=e6e0364aa69a1fef4621e7d016839a3dffbcddff5d575ba4ee7f4af5cebd754d (from https://pypi.org/simple/dark-matter/), version: 1.0.41
2021-01-29T17:03:02,885   Found link https://files.pythonhosted.org/packages/1b/bb/9a2bffcc74c3bb8c2f45106443174a74dbe3424e45eb483ba7bf72da1fe2/dark-matter-1.0.42.tar.gz#sha256=2540312ed60fed3f5a52b5ec60409e712c8a562569baa132be6ab0c53edbec83 (from https://pypi.org/simple/dark-matter/), version: 1.0.42
2021-01-29T17:03:02,886   Found link https://files.pythonhosted.org/packages/e2/dd/cb0a17ce78d39d3b6d6dc93f54c49069b722569042312f7044143a67af30/dark-matter-1.0.43.tar.gz#sha256=17548e06b695864df72afb4e6664261333612b991373745f4e68f99ed48ace5f (from https://pypi.org/simple/dark-matter/), version: 1.0.43
2021-01-29T17:03:02,887   Found link https://files.pythonhosted.org/packages/88/ee/c6e7d4142ee1baca46ff0d7f295b7d5a4059648c815de4223f873f17a448/dark-matter-1.0.44.tar.gz#sha256=468d2be2ad00ddcdfafe52f09a6a8971b40964e816fdb95de2772d32879d3fc5 (from https://pypi.org/simple/dark-matter/), version: 1.0.44
2021-01-29T17:03:02,888   Found link https://files.pythonhosted.org/packages/7e/71/19001567a982f1ea235095e6f2042990e0666c343bfd985b2c2b8a6a6edc/dark-matter-1.0.45.tar.gz#sha256=b60e397a82b3183fae2cdee32ac92f43f4533bcb5a7683d5fc3e58dd6ceee4fd (from https://pypi.org/simple/dark-matter/), version: 1.0.45
2021-01-29T17:03:02,889   Found link https://files.pythonhosted.org/packages/9b/71/0395a4c77fc9443e4b1c8d6d3787d527c2d06ecf56c75db9779bb602d594/dark-matter-1.0.46.tar.gz#sha256=66aaa9872db60c407b047f5e997c8155fe0626df9222b251a6f65b15ca4d3423 (from https://pypi.org/simple/dark-matter/), version: 1.0.46
2021-01-29T17:03:02,890   Found link https://files.pythonhosted.org/packages/85/3b/b68351e5280d2f65b26ca3e225a5a0385d921a6d25cef62563eeaec42343/dark-matter-1.0.47.tar.gz#sha256=b51c372b06fe94fcc93f8795aa5d2b2a547108934cc5c429e89972cdea153baf (from https://pypi.org/simple/dark-matter/), version: 1.0.47
2021-01-29T17:03:02,890   Found link https://files.pythonhosted.org/packages/fb/4c/6e27c41b817fc86240a956472978b226008da91e8c2b2b5dd991091c3a2d/dark-matter-1.0.48.tar.gz#sha256=e9ca7aad5b5631658d2ab154108568faa6196f7cea8dfaef1881d0013a3c59bd (from https://pypi.org/simple/dark-matter/), version: 1.0.48
2021-01-29T17:03:02,891   Found link https://files.pythonhosted.org/packages/07/65/1253b1fcd6c75fbbc19eee09982ec62023742959583d6687c666befffb71/dark-matter-1.0.49.tar.gz#sha256=7fe2af86f08e9e2416869c8fa571fc79b5a6965d4e2e9624536984a6ede94d5e (from https://pypi.org/simple/dark-matter/), version: 1.0.49
2021-01-29T17:03:02,892   Found link https://files.pythonhosted.org/packages/ac/93/e94fa7a2455aa54ebc294bb5bd93c11aca3c461073aee1fab28b4ee380ae/dark-matter-1.0.50.tar.gz#sha256=cd9ce5690ff46e8a27b17505dc500d0dc065bb403d6aa731615fbcfa0e9ecb50 (from https://pypi.org/simple/dark-matter/), version: 1.0.50
2021-01-29T17:03:02,893   Found link https://files.pythonhosted.org/packages/b9/ce/7d74daae572ebb32ffdbd439440361f5bf39eb9f9d0f55654878cbd7cbb2/dark-matter-1.0.51.tar.gz#sha256=ca7762302eb529ec15dbc0bba35397dc018cb3b43b371b02495ba1caa8fc6fe2 (from https://pypi.org/simple/dark-matter/), version: 1.0.51
2021-01-29T17:03:02,894   Found link https://files.pythonhosted.org/packages/cd/fb/8ff473df5992d3cdfc57151ff5595561c42fff343fcc01c76f3b95cd1eb9/dark-matter-1.0.52.tar.gz#sha256=7c5cadd1c74c4c85d55ec808f2ecd1a86abf726b7f3dc4b8755a32dc81a57094 (from https://pypi.org/simple/dark-matter/), version: 1.0.52
2021-01-29T17:03:02,895   Found link https://files.pythonhosted.org/packages/d4/a7/8e4a7fc079ce3324a605902fb7fe865ab846ba3376408987680cc68703c7/dark-matter-1.0.53.tar.gz#sha256=c06386be8fc1f85e76fc6f7c6b8ea6597503a9c238e5368e0975f18ea9fe3f6a (from https://pypi.org/simple/dark-matter/), version: 1.0.53
2021-01-29T17:03:02,896   Found link https://files.pythonhosted.org/packages/a8/50/55d45de9c1903904647e651a955b56dff452d61f9e095a5004a149ab2eca/dark-matter-1.0.54.tar.gz#sha256=cb4fefda8208eb0d40c4b172c30286b4be960018e89c89aacb94f177cbd0a77a (from https://pypi.org/simple/dark-matter/), version: 1.0.54
2021-01-29T17:03:02,897   Found link https://files.pythonhosted.org/packages/47/41/cc272f599662d184f754abc67ee763ac9da02c5d9ef5d1155effe67d132f/dark-matter-1.0.55.tar.gz#sha256=d1b4537860411417b98b32252f8a363623c263464c32d994cd442de74e36d4d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.55
2021-01-29T17:03:02,898   Found link https://files.pythonhosted.org/packages/d3/d8/250e7506219460c7da81f6f51bf93cce13d21b461392dcbfa1311e504a95/dark-matter-1.0.56.tar.gz#sha256=d5cbddab4a2b8cc948329f46660259c2bb30b866446ddfc12e8c6b8ddc9822ff (from https://pypi.org/simple/dark-matter/), version: 1.0.56
2021-01-29T17:03:02,899   Found link https://files.pythonhosted.org/packages/81/c7/3bf4ec17c4f0e02ca7741f7ede49d58680f12b48a4a7350031ffe8b38ba1/dark-matter-1.0.57.tar.gz#sha256=3d33c771486b56c8a4dd10fb70f91e4c0ce1d279d05cbdf6dac92cceffb35809 (from https://pypi.org/simple/dark-matter/), version: 1.0.57
2021-01-29T17:03:02,900   Found link https://files.pythonhosted.org/packages/f1/d5/6e02cb418664b484f16ea42b60a86add44acf56dda4875001528957c27b2/dark-matter-1.0.58.tar.gz#sha256=6a9e75658cacc7ae7e9926d0debd5605e15e5761452455e4f65c96b3cd947c6b (from https://pypi.org/simple/dark-matter/), version: 1.0.58
2021-01-29T17:03:02,901   Found link https://files.pythonhosted.org/packages/5a/d3/a69ed2feeac3afcb852a8bcce6cadd5b541cd78de3756f0519a62ca29371/dark-matter-1.0.59.tar.gz#sha256=1f0c71e01cce5ca62b1599c974ff24b8b211349f880c365ecbdce369c6877280 (from https://pypi.org/simple/dark-matter/), version: 1.0.59
2021-01-29T17:03:02,902   Found link https://files.pythonhosted.org/packages/68/70/96bd4a89d1c5f40e05d734be94ae1571be35c0b4c4e19e22c0be893c9e1c/dark-matter-1.0.60.tar.gz#sha256=933a4cc3f34ed03198cacedaab9cc0915402bfff0ad238a0f879c7b246243f02 (from https://pypi.org/simple/dark-matter/), version: 1.0.60
2021-01-29T17:03:02,903   Found link https://files.pythonhosted.org/packages/55/52/ab50ff5d12bb5efd1171a964a4f5baa03edb0091dfa5c79af08fbbe4da16/dark-matter-1.0.61.tar.gz#sha256=09e5bdfd05c954d34fc87541f61a416169ae53daea1a22723de915a9f50ea9e4 (from https://pypi.org/simple/dark-matter/), version: 1.0.61
2021-01-29T17:03:02,903   Found link https://files.pythonhosted.org/packages/ab/de/cc9a342e642f66e60c8ff98d1786229d5cfcfb0306158f0c19ef61059303/dark-matter-1.0.62.tar.gz#sha256=6f7347e0923abd2eb2118862a03966c5204262e5d496e11900de3aed43724265 (from https://pypi.org/simple/dark-matter/), version: 1.0.62
2021-01-29T17:03:02,904   Found link https://files.pythonhosted.org/packages/cd/a5/713b8a9f25437fafe2a34291ca34f945c9e1394c2e600f73e5abd8e3282e/dark-matter-1.0.63.tar.gz#sha256=fca60020cce6b249f61f6ae5e268dbd20f71a2d257bb668c84313ca29d6873b1 (from https://pypi.org/simple/dark-matter/), version: 1.0.63
2021-01-29T17:03:02,905   Found link https://files.pythonhosted.org/packages/77/fe/320a21e0c4c116bd28487af7156a9937a90dcc44f70c4f720267e9b14291/dark-matter-1.0.64.tar.gz#sha256=d1c1764b08f3fbdf71f46a5f9acbe0deadb96d5af5b4b99d8b19e13e4abe9e3d (from https://pypi.org/simple/dark-matter/), version: 1.0.64
2021-01-29T17:03:02,906   Found link https://files.pythonhosted.org/packages/a0/08/9be54a6570a6acf6f87d5ca8ff9f91660697fc32212d0be3601785e796b9/dark-matter-1.0.65.tar.gz#sha256=1332fafc881be70d395aa69ed174c0036941f2d4f8e170f24ba6c0fa14397de6 (from https://pypi.org/simple/dark-matter/), version: 1.0.65
2021-01-29T17:03:02,907   Found link https://files.pythonhosted.org/packages/7b/61/46caedf674111789641d78a4252b26d1ea43d3d8c77f906b3abc7c638acc/dark-matter-1.0.66.tar.gz#sha256=a0ad6f3e8afe8294c1aa5011577533334d2a6cbb16eaaa9b48a451fe0a9db293 (from https://pypi.org/simple/dark-matter/), version: 1.0.66
2021-01-29T17:03:02,908   Found link https://files.pythonhosted.org/packages/97/54/fc8129e31460a4007b2d328e37efeb55a3488b7a7a34592e0c738ac27079/dark-matter-1.0.67.tar.gz#sha256=709dbe5d0c6df732587900ea0ee3a8508fd43a37d7aff3ec5387bbee7d7917cd (from https://pypi.org/simple/dark-matter/), version: 1.0.67
2021-01-29T17:03:02,909   Found link https://files.pythonhosted.org/packages/e5/33/890848c35cb392c57712943c79ffe317ce401bd2db2a616637719f8c5522/dark-matter-1.0.68.tar.gz#sha256=5426893dee726d1f3da0d38176f4489d983e698b36586b2a5d4030ccfd38ae9f (from https://pypi.org/simple/dark-matter/), version: 1.0.68
2021-01-29T17:03:02,910   Found link https://files.pythonhosted.org/packages/c2/23/5e4253583920bada6ee2f5204fbaf8a745527f8ba5c585ac8891fa959991/dark-matter-1.0.69.tar.gz#sha256=494ab515566d76d337f7b25186921029e01e84460ae1f2d81c355a9ae135a18c (from https://pypi.org/simple/dark-matter/), version: 1.0.69
2021-01-29T17:03:02,911   Found link https://files.pythonhosted.org/packages/3d/6a/1cf82dcc5f77ac300a3ee4c1fce72edad81280795e42f0da80b67b3a1838/dark-matter-1.0.70.tar.gz#sha256=f74facc816c78353ee9cdeeac334e9e03d05c38cc381588def6443125fe7ff17 (from https://pypi.org/simple/dark-matter/), version: 1.0.70
2021-01-29T17:03:02,912   Found link https://files.pythonhosted.org/packages/64/9a/ace6de00719320e68408c58f3abe036645a29901f17e3e1cd356260cb9f5/dark-matter-1.0.71.tar.gz#sha256=f0ed0a32bf00786a18d3b50596ad79ec24f01ed3fa9d56f36efec9db58a750a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.71
2021-01-29T17:03:02,913   Found link https://files.pythonhosted.org/packages/94/d0/a1e5aabab8ad66683757b3b0569d672da3528a5a8619f830f33c2d6bb179/dark-matter-1.0.72.tar.gz#sha256=3cab3d9241f6fccf0e1a88ed3f572b90bd296c41810b85b49054ba4238742061 (from https://pypi.org/simple/dark-matter/), version: 1.0.72
2021-01-29T17:03:02,914   Found link https://files.pythonhosted.org/packages/a2/1a/f7d17f7e7d196b1fb5382a27adc6ae61bbc4c47ad812c9e78de890b61743/dark-matter-1.0.73.tar.gz#sha256=ef4359ea0a02e00b3f1b06754da34fb6cfbe030ecd3976dac50841c0ae46c062 (from https://pypi.org/simple/dark-matter/), version: 1.0.73
2021-01-29T17:03:02,915   Found link https://files.pythonhosted.org/packages/8e/dc/f8fbeb00d964a029f3e444ed65ba9ca0f69e83c4b19d93efb858ac9d67cf/dark-matter-1.0.74.tar.gz#sha256=90c2fc0dcc27bbd558041ae982768c630c602360754f3e07577c2711966c1fb7 (from https://pypi.org/simple/dark-matter/), version: 1.0.74
2021-01-29T17:03:02,916   Found link https://files.pythonhosted.org/packages/26/50/60d51f6d26ec912a10cd058c4221c4794813080bcccd2f5af993a2bfe973/dark-matter-1.0.75.tar.gz#sha256=9db8994744be84b8d67035bff720b4b8330e8682339d3bef01a857210d400c50 (from https://pypi.org/simple/dark-matter/), version: 1.0.75
2021-01-29T17:03:02,916   Found link https://files.pythonhosted.org/packages/03/bb/45b48f894b2b3f2a08e9e3c3c07ce133db94e91a363688f3ab9ce4969d80/dark-matter-1.0.76.tar.gz#sha256=940772c257a0f785f0f5efa53a7075692b5fa889a6c1d3432e17929fc30a1179 (from https://pypi.org/simple/dark-matter/), version: 1.0.76
2021-01-29T17:03:02,917   Found link https://files.pythonhosted.org/packages/5a/b2/63dea9b0ab7517190dd58b390cd9f0c007da74ad33c1ce37a74e6640e62c/dark-matter-1.0.77.tar.gz#sha256=e027b5a28158d9e74d712bdc4651580fe3c14be15a124a7a7634523e2cafd842 (from https://pypi.org/simple/dark-matter/), version: 1.0.77
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2021-01-29T17:03:03,088   Found link https://files.pythonhosted.org/packages/31/d5/2ab8947c7bb07396acefa0db2d149405867fc295953941073b64ea45c22c/dark-matter-3.1.52.tar.gz#sha256=97ebf1c71769c84054c41d87f844aaffb8d9c734f308665ffc90471e08ea42c0 (from https://pypi.org/simple/dark-matter/), version: 3.1.52
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2021-01-29T17:03:03,090   Found link https://files.pythonhosted.org/packages/bd/b4/10e032af240744121443ac88366f52e57573aaf549173aa8a42fa094518b/dark-matter-3.1.54.tar.gz#sha256=62a62a8791f3e7b485c27f2963de4fab36a83893001f4c3de873a13a7161d3cb (from https://pypi.org/simple/dark-matter/), version: 3.1.54
2021-01-29T17:03:03,091   Found link https://files.pythonhosted.org/packages/9c/bf/a12a19a098f3935ef3577f7cc1bfce86b6b9f12345cfb37ffa9e67d6eca6/dark-matter-3.1.55.tar.gz#sha256=81888438e1778fe3a0e929f03605c4243cb16b2c09b1eb54c85ab8aec5e15190 (from https://pypi.org/simple/dark-matter/), version: 3.1.55
2021-01-29T17:03:03,092   Found link https://files.pythonhosted.org/packages/8a/69/d8c027b1941f7d309feed03a20f5d1df81bbea0abff5113fa300688f89f9/dark-matter-3.1.56.tar.gz#sha256=434da8c4aa08cb37519020b2cef148332e17964be7dc1c54dbbfae0a32cb01d9 (from https://pypi.org/simple/dark-matter/), version: 3.1.56
2021-01-29T17:03:03,093   Found link https://files.pythonhosted.org/packages/e4/41/11a054746343bf60324436f2d3cc80176b4ff1dfca5408a5167f1b4d07f4/dark-matter-3.1.57.tar.gz#sha256=1a8b9d7961616bef7c9bb4d631092105f00d65809cb01cfedbf5cdeac44f18ae (from https://pypi.org/simple/dark-matter/), version: 3.1.57
2021-01-29T17:03:03,094   Found link https://files.pythonhosted.org/packages/44/b2/3a5f7cc9c565b0b62033c889d677ac78943d71681a0a5b1ab86aa097b78e/dark-matter-3.1.58.tar.gz#sha256=9ea418fa491da09c651ba4d65794a49d543419f82ffb4f8e435d79d17632d2c1 (from https://pypi.org/simple/dark-matter/), version: 3.1.58
2021-01-29T17:03:03,095   Found link https://files.pythonhosted.org/packages/e9/a8/5241a7d0cdd83647e8b46a08450e85a288516d36ef9581b96660f92a787a/dark-matter-3.1.59.tar.gz#sha256=6434d364fcc7d9adb8243177f7a8e693dd30f09130edb8f847c191d1b02aa780 (from https://pypi.org/simple/dark-matter/), version: 3.1.59
2021-01-29T17:03:03,095   Found link https://files.pythonhosted.org/packages/4c/c0/98572170264a8023cea24bdbe7012b65593ac133553b5dc7df367e4f3485/dark-matter-3.1.60.tar.gz#sha256=32210c41a298695ffb53dfb7d993be85797b1b21dd10eb85674a26b0b2823db5 (from https://pypi.org/simple/dark-matter/), version: 3.1.60
2021-01-29T17:03:03,096   Found link https://files.pythonhosted.org/packages/f0/bf/0dfcf9b9f944d9ce8df66f477901cafb3e353e87a71c3557a4d5cc062a55/dark-matter-3.1.61.tar.gz#sha256=9ccde70d55378b876f770876fa9e6ddb9b44156c20b841a689306102f715049f (from https://pypi.org/simple/dark-matter/), version: 3.1.61
2021-01-29T17:03:03,097   Found link https://files.pythonhosted.org/packages/f5/90/f26411c4c1d5f75d0eba78699caff045f8556f45692a2d5f6fa247976c96/dark-matter-3.1.62.tar.gz#sha256=d2c34002929425e077d7e4e3b2fdef41215e14dc8c8aba270f959392caef79fe (from https://pypi.org/simple/dark-matter/), version: 3.1.62
2021-01-29T17:03:03,098   Found link https://files.pythonhosted.org/packages/a5/af/109ab833bc5753cf18312437bcea64ecf7b6cbda17aed3991f448b41b6f0/dark-matter-3.1.63.tar.gz#sha256=aefd913f742ec8b569fb72f31e8848c28ac54685c1b0154b78cbe4fa7793a7a4 (from https://pypi.org/simple/dark-matter/), version: 3.1.63
2021-01-29T17:03:03,099   Found link https://files.pythonhosted.org/packages/6c/6b/2e03e6204e9f866ce23be0b663aed386fc096a6e09bb8b1453eb6ef3784e/dark-matter-3.1.64.tar.gz#sha256=e672a81e36133ee79d279612e21aaaf42684998c2dbd0539c5b059baa6eb7501 (from https://pypi.org/simple/dark-matter/), version: 3.1.64
2021-01-29T17:03:03,100   Found link https://files.pythonhosted.org/packages/a3/a6/1e3f6a2723897887193139e6a281c084c38d6b96d83217870ed63b6e762b/dark-matter-3.1.65.tar.gz#sha256=2f184bf5d3be28ff1a6353f9930c0eb6195ed8758941bfb714e7f235671ed429 (from https://pypi.org/simple/dark-matter/), version: 3.1.65
2021-01-29T17:03:03,101   Found link https://files.pythonhosted.org/packages/8b/66/647a76b63cb9c8b54d6d193f3db6daca0fbad118e4793833df7f0222231e/dark-matter-3.1.66.tar.gz#sha256=90779f03ba5d74e35f25be3124a7dcaa13f3378090cfd450db744ed6cd906d07 (from https://pypi.org/simple/dark-matter/), version: 3.1.66
2021-01-29T17:03:03,102   Found link https://files.pythonhosted.org/packages/83/27/d05457072569763d8927b81fb1be75609c1311709eef9c9669d0f6438b1f/dark-matter-3.1.67.tar.gz#sha256=a81d28c8a2bc51683b95c2f863fab1aeb5d45812d38c58df6c9ec95bf237fea6 (from https://pypi.org/simple/dark-matter/), version: 3.1.67
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2021-01-29T17:03:03,104   Found link https://files.pythonhosted.org/packages/c7/80/6043cb5c2dd0923452df0dba23d8cd7dc0f8a0757debedf90dc1d471a6d3/dark-matter-3.1.69.tar.gz#sha256=79f9469763a1cd84a09d092722d063c5b9eb24dfd0ab33146249df79f5d67645 (from https://pypi.org/simple/dark-matter/), version: 3.1.69
2021-01-29T17:03:03,105   Found link https://files.pythonhosted.org/packages/62/e7/8217995c8d29d3bbf3fb7044e2a8965cc999699756c172e7c01c6e0fe061/dark-matter-3.1.70.tar.gz#sha256=54a05b0925e0d857344ac57db28e0d05cd1a03ddfe8af670770eb2d123a35cfc (from https://pypi.org/simple/dark-matter/), version: 3.1.70
2021-01-29T17:03:03,105   Found link https://files.pythonhosted.org/packages/3e/5e/97a1ce92fc47c9169994d116768eada55c43373e357ca008e74e5a1dc142/dark-matter-3.1.71.tar.gz#sha256=dd7faaf60baca13b53d74dd57d9b0a6d7cd9c478f69b2a93a499b12aa19bb673 (from https://pypi.org/simple/dark-matter/), version: 3.1.71
2021-01-29T17:03:03,106   Found link https://files.pythonhosted.org/packages/82/97/c5290cbc394d056b863492e5a9d8baee17e76a5791974dabeb60dd1aaa9d/dark-matter-3.1.72.tar.gz#sha256=8fd2416dc876d419706f63f60cff92ce10c5d579a45bbb28c1a691a147c9387d (from https://pypi.org/simple/dark-matter/), version: 3.1.72
2021-01-29T17:03:03,107   Found link https://files.pythonhosted.org/packages/e3/99/4ede5f73adb9a626398f1c60828357875bb15ce6a089f1f5d7cccdc23727/dark-matter-3.1.73.tar.gz#sha256=91427c52968f8db1c8ad6985ad39286155f6f1918e6d4c330942655ef61e3905 (from https://pypi.org/simple/dark-matter/), version: 3.1.73
2021-01-29T17:03:03,108   Found link https://files.pythonhosted.org/packages/63/f5/c113abaa137fabb548cbce7de51585a391ccbef68fdb50bac8b113c7881e/dark-matter-3.1.74.tar.gz#sha256=68d96ddda46298d92677dd83f4be92cf0f4d7bff45017ec362d4a7b954281bc0 (from https://pypi.org/simple/dark-matter/), version: 3.1.74
2021-01-29T17:03:03,109   Found link https://files.pythonhosted.org/packages/98/08/0cb8bda914063ba75079777c29571d3ef387047b097842dd5ed1790422d6/dark-matter-3.1.75.tar.gz#sha256=d69aa004b92d0683e421274f18add6a26e0d0c864c56c078bc7c6e67ca827f77 (from https://pypi.org/simple/dark-matter/), version: 3.1.75
2021-01-29T17:03:03,110   Found link https://files.pythonhosted.org/packages/cb/7f/75d266c4266f1b9179b22bb1edb7d38f5a6083b094c5e6fc53ef6c8a2995/dark-matter-3.1.76.tar.gz#sha256=a0bb511247a7ec82ceb8cf8eabfa045aa569e75d9f59def183f0c6158bdd7f17 (from https://pypi.org/simple/dark-matter/), version: 3.1.76
2021-01-29T17:03:03,111   Found link https://files.pythonhosted.org/packages/b2/c0/c5db9094660aae28d21252b24d6d21619149da37833da5164f407c9ea128/dark-matter-3.1.79.tar.gz#sha256=cc14e1021624cb50886b2e5b70b94259e004c975f0480ff35d9a3381e352f07e (from https://pypi.org/simple/dark-matter/), version: 3.1.79
2021-01-29T17:03:03,112   Found link https://files.pythonhosted.org/packages/bb/91/b9cb62df81f871bb56fb78d6038753845d4d4e90d1737ae6f410160ff31f/dark-matter-3.1.81.tar.gz#sha256=3d20c804033e2c2a2e453bb96b58fcde16e8ddca3057696e77330aa6e8df00d5 (from https://pypi.org/simple/dark-matter/), version: 3.1.81
2021-01-29T17:03:03,113   Found link https://files.pythonhosted.org/packages/fc/7c/182ac5794f96f41e378916d74a2f61883be0fc04f51e9fc88856cf55ff99/dark-matter-3.1.82.tar.gz#sha256=ab9cdf88400e98a49d5233b4deac87c60d1394f1a66bb1d770e24a7542b061dd (from https://pypi.org/simple/dark-matter/), version: 3.1.82
2021-01-29T17:03:03,114   Found link https://files.pythonhosted.org/packages/d1/29/20a1d35035fece08efda70f18f4fea4913d179edd497a811516589b6f6c0/dark-matter-3.1.84.tar.gz#sha256=8202263762607e3312781054ed326f82c0b8348bae1b9b803f21b07ea1ce15fd (from https://pypi.org/simple/dark-matter/), version: 3.1.84
2021-01-29T17:03:03,115   Found link https://files.pythonhosted.org/packages/13/d4/262226886768170d06cdc7b41b143e9151aaf6651725b48a949f9920305f/dark-matter-3.1.85.tar.gz#sha256=ef2ba3420eec01ff6aa91d30ac7a7e19e3abc53b270fb66c060540b4fbdb703a (from https://pypi.org/simple/dark-matter/), version: 3.1.85
2021-01-29T17:03:03,262 Given no hashes to check 1 links for project 'dark-matter': discarding no candidates
2021-01-29T17:03:03,302 Collecting dark-matter==3.1.85
2021-01-29T17:03:03,306   Created temporary directory: /tmp/pip-unpack-n8aes2a0
2021-01-29T17:03:03,549   Downloading dark-matter-3.1.85.tar.gz (331 kB)
2021-01-29T17:03:05,003   Added dark-matter==3.1.85 from https://files.pythonhosted.org/packages/13/d4/262226886768170d06cdc7b41b143e9151aaf6651725b48a949f9920305f/dark-matter-3.1.85.tar.gz#sha256=ef2ba3420eec01ff6aa91d30ac7a7e19e3abc53b270fb66c060540b4fbdb703a to build tracker '/tmp/pip-req-tracker-lragw5c2'
2021-01-29T17:03:05,006     Running setup.py (path:/tmp/pip-wheel-6_d0yk_v/dark-matter_3d21d6cb00d245a79aec788d7d2284a4/setup.py) egg_info for package dark-matter
2021-01-29T17:03:05,009     Created temporary directory: /tmp/pip-pip-egg-info-fjzo18om
2021-01-29T17:03:05,010     Running command python setup.py egg_info
2021-01-29T17:03:07,592     running egg_info
2021-01-29T17:03:07,598     creating /tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info
2021-01-29T17:03:07,602     writing top-level names to /tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info/top_level.txt
2021-01-29T17:03:07,606     writing /tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info/PKG-INFO
2021-01-29T17:03:07,611     writing requirements to /tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info/requires.txt
2021-01-29T17:03:07,613     writing dependency_links to /tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info/dependency_links.txt
2021-01-29T17:03:07,618     writing manifest file '/tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info/SOURCES.txt'
2021-01-29T17:03:08,064     reading manifest file '/tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info/SOURCES.txt'
2021-01-29T17:03:08,096     writing manifest file '/tmp/pip-pip-egg-info-fjzo18om/dark_matter.egg-info/SOURCES.txt'
2021-01-29T17:03:08,239   Source in /tmp/pip-wheel-6_d0yk_v/dark-matter_3d21d6cb00d245a79aec788d7d2284a4 has version 3.1.85, which satisfies requirement dark-matter==3.1.85 from https://files.pythonhosted.org/packages/13/d4/262226886768170d06cdc7b41b143e9151aaf6651725b48a949f9920305f/dark-matter-3.1.85.tar.gz#sha256=ef2ba3420eec01ff6aa91d30ac7a7e19e3abc53b270fb66c060540b4fbdb703a
2021-01-29T17:03:08,240   Removed dark-matter==3.1.85 from https://files.pythonhosted.org/packages/13/d4/262226886768170d06cdc7b41b143e9151aaf6651725b48a949f9920305f/dark-matter-3.1.85.tar.gz#sha256=ef2ba3420eec01ff6aa91d30ac7a7e19e3abc53b270fb66c060540b4fbdb703a from build tracker '/tmp/pip-req-tracker-lragw5c2'
2021-01-29T17:03:08,249 Created temporary directory: /tmp/pip-unpack-v87f45c3
2021-01-29T17:03:08,250 Building wheels for collected packages: dark-matter
2021-01-29T17:03:08,259   Created temporary directory: /tmp/pip-wheel-zp0ovhq8
2021-01-29T17:03:08,260   Building wheel for dark-matter (setup.py): started
2021-01-29T17:03:08,260   Destination directory: /tmp/pip-wheel-zp0ovhq8
2021-01-29T17:03:08,261   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6_d0yk_v/dark-matter_3d21d6cb00d245a79aec788d7d2284a4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6_d0yk_v/dark-matter_3d21d6cb00d245a79aec788d7d2284a4/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zp0ovhq8
2021-01-29T17:03:10,811   running bdist_wheel
2021-01-29T17:03:10,827   running build
2021-01-29T17:03:10,827   running build_py
2021-01-29T17:03:11,166   creating build
2021-01-29T17:03:11,167   creating build/lib
2021-01-29T17:03:11,168   creating build/lib/dark
2021-01-29T17:03:11,171   copying dark/orfs.py -> build/lib/dark
2021-01-29T17:03:11,175   copying dark/hsp.py -> build/lib/dark
2021-01-29T17:03:11,180   copying dark/analyze_reads.py -> build/lib/dark
2021-01-29T17:03:11,184   copying dark/dna.py -> build/lib/dark
2021-01-29T17:03:11,190   copying dark/titles.py -> build/lib/dark
2021-01-29T17:03:11,196   copying dark/bowtie2.py -> build/lib/dark
2021-01-29T17:03:11,203   copying dark/sequence.py -> build/lib/dark
2021-01-29T17:03:11,209   copying dark/utils.py -> build/lib/dark
2021-01-29T17:03:11,215   copying dark/colors.py -> build/lib/dark
2021-01-29T17:03:11,219   copying dark/alignments.py -> build/lib/dark
2021-01-29T17:03:11,225   copying dark/score.py -> build/lib/dark
2021-01-29T17:03:11,229   copying dark/local_align.py -> build/lib/dark
2021-01-29T17:03:11,235   copying dark/consensus.py -> build/lib/dark
2021-01-29T17:03:11,241   copying dark/graphics.py -> build/lib/dark
2021-01-29T17:03:11,250   copying dark/fastq.py -> build/lib/dark
2021-01-29T17:03:11,255   copying dark/aa.py -> build/lib/dark
2021-01-29T17:03:11,265   copying dark/summarize.py -> build/lib/dark
2021-01-29T17:03:11,270   copying dark/fasta.py -> build/lib/dark
2021-01-29T17:03:11,277   copying dark/database.py -> build/lib/dark
2021-01-29T17:03:11,282   copying dark/aligners.py -> build/lib/dark
2021-01-29T17:03:11,288   copying dark/__init__.py -> build/lib/dark
2021-01-29T17:03:11,293   copying dark/fasta_ss.py -> build/lib/dark
2021-01-29T17:03:11,298   copying dark/sam.py -> build/lib/dark
2021-01-29T17:03:11,305   copying dark/codonDistance.py -> build/lib/dark
2021-01-29T17:03:11,309   copying dark/process.py -> build/lib/dark
2021-01-29T17:03:11,313   copying dark/filter.py -> build/lib/dark
2021-01-29T17:03:11,320   copying dark/ncbidb.py -> build/lib/dark
2021-01-29T17:03:11,325   copying dark/html.py -> build/lib/dark
2021-01-29T17:03:11,331   copying dark/dimension.py -> build/lib/dark
2021-01-29T17:03:11,337   copying dark/proteins.py -> build/lib/dark
2021-01-29T17:03:11,345   copying dark/simplify.py -> build/lib/dark
2021-01-29T17:03:11,349   copying dark/baseimage.py -> build/lib/dark
2021-01-29T17:03:11,353   copying dark/fpcache.py -> build/lib/dark
2021-01-29T17:03:11,357   copying dark/features.py -> build/lib/dark
2021-01-29T17:03:11,364   copying dark/ipynb.py -> build/lib/dark
2021-01-29T17:03:11,369   copying dark/errors.py -> build/lib/dark
2021-01-29T17:03:11,374   copying dark/cigar.py -> build/lib/dark
2021-01-29T17:03:11,379   copying dark/entrez.py -> build/lib/dark
2021-01-29T17:03:11,383   copying dark/distance.py -> build/lib/dark
2021-01-29T17:03:11,387   copying dark/mutations.py -> build/lib/dark
2021-01-29T17:03:11,393   copying dark/reads.py -> build/lib/dark
2021-01-29T17:03:11,404   copying dark/genomes.py -> build/lib/dark
2021-01-29T17:03:11,411   copying dark/taxonomy.py -> build/lib/dark
2021-01-29T17:03:11,419   copying dark/genbank.py -> build/lib/dark
2021-01-29T17:03:11,426   copying dark/btop.py -> build/lib/dark
2021-01-29T17:03:11,432   copying dark/intervals.py -> build/lib/dark
2021-01-29T17:03:11,441   creating build/lib/dark/blast
2021-01-29T17:03:11,444   copying dark/blast/hsp.py -> build/lib/dark/blast
2021-01-29T17:03:11,451   copying dark/blast/params.py -> build/lib/dark/blast
2021-01-29T17:03:11,456   copying dark/blast/alignments.py -> build/lib/dark/blast
2021-01-29T17:03:11,462   copying dark/blast/score.py -> build/lib/dark/blast
2021-01-29T17:03:11,466   copying dark/blast/hacks.py -> build/lib/dark/blast
2021-01-29T17:03:11,470   copying dark/blast/conversion.py -> build/lib/dark/blast
2021-01-29T17:03:11,476   copying dark/blast/__init__.py -> build/lib/dark/blast
2021-01-29T17:03:11,479   copying dark/blast/records.py -> build/lib/dark/blast
2021-01-29T17:03:11,487   creating build/lib/dark/diamond
2021-01-29T17:03:11,489   copying dark/diamond/hsp.py -> build/lib/dark/diamond
2021-01-29T17:03:11,497   copying dark/diamond/alignments.py -> build/lib/dark/diamond
2021-01-29T17:03:11,502   copying dark/diamond/conversion.py -> build/lib/dark/diamond
2021-01-29T17:03:11,508   copying dark/diamond/__init__.py -> build/lib/dark/diamond
2021-01-29T17:03:11,512   copying dark/diamond/sam.py -> build/lib/dark/diamond
2021-01-29T17:03:11,518   copying dark/diamond/run.py -> build/lib/dark/diamond
2021-01-29T17:03:11,525   creating build/lib/dark/civ
2021-01-29T17:03:11,528   copying dark/civ/graphics.py -> build/lib/dark/civ
2021-01-29T17:03:11,536   copying dark/civ/__init__.py -> build/lib/dark/civ
2021-01-29T17:03:11,541   copying dark/civ/html.py -> build/lib/dark/civ
2021-01-29T17:03:11,547   copying dark/civ/proteins.py -> build/lib/dark/civ
2021-01-29T17:03:11,582   running build_scripts
2021-01-29T17:03:11,583   creating build/scripts-3.5
2021-01-29T17:03:11,586   copying and adjusting bin/aa-info.py -> build/scripts-3.5
2021-01-29T17:03:11,590   copying and adjusting bin/aa-to-dna.py -> build/scripts-3.5
2021-01-29T17:03:11,593   copying and adjusting bin/aa-to-properties.py -> build/scripts-3.5
2021-01-29T17:03:11,596   copying and adjusting bin/adaptor-distances.py -> build/scripts-3.5
2021-01-29T17:03:11,600   copying and adjusting bin/alignment-panel-civ.py -> build/scripts-3.5
2021-01-29T17:03:11,606   copying and adjusting bin/alignments-per-read.py -> build/scripts-3.5
2021-01-29T17:03:11,609   copying and adjusting bin/bit-score-to-e-value.py -> build/scripts-3.5
2021-01-29T17:03:11,612   copying and adjusting bin/cat-json-blast-records.py -> build/scripts-3.5
2021-01-29T17:03:11,616   copying and adjusting bin/check-fasta-json-blast-consistency.py -> build/scripts-3.5
2021-01-29T17:03:11,619   copying and adjusting bin/codon-distance.py -> build/scripts-3.5
2021-01-29T17:03:11,624   copying and adjusting bin/compare-consensuses.py -> build/scripts-3.5
2021-01-29T17:03:11,630   copying and adjusting bin/compare-sequences.py -> build/scripts-3.5
2021-01-29T17:03:11,636   copying and adjusting bin/convert-blast-xml-to-json.py -> build/scripts-3.5
2021-01-29T17:03:11,641   copying and adjusting bin/convert-diamond-to-json.py -> build/scripts-3.5
2021-01-29T17:03:11,645   copying and adjusting bin/convert-diamond-to-sam.py -> build/scripts-3.5
2021-01-29T17:03:11,649   copying bin/convert-sam-to-fastq.sh -> build/scripts-3.5
2021-01-29T17:03:11,654   copying and adjusting bin/create-newick-relabeling-output.py -> build/scripts-3.5
2021-01-29T17:03:11,658   copying and adjusting bin/dark-matter-version.py -> build/scripts-3.5
2021-01-29T17:03:11,661   copying and adjusting bin/describe-protein-database.py -> build/scripts-3.5
2021-01-29T17:03:11,665   copying and adjusting bin/dna-to-aa.py -> build/scripts-3.5
2021-01-29T17:03:11,670   copying bin/download-genbank.sh -> build/scripts-3.5
2021-01-29T17:03:11,678   copying and adjusting bin/e-value-to-bit-score.py -> build/scripts-3.5
2021-01-29T17:03:11,682   copying and adjusting bin/extract-ORFs.py -> build/scripts-3.5
2021-01-29T17:03:11,688   copying and adjusting bin/fasta-base-indices.py -> build/scripts-3.5
2021-01-29T17:03:11,693   copying and adjusting bin/fasta-count.py -> build/scripts-3.5
2021-01-29T17:03:11,698   copying bin/fasta-diff.sh -> build/scripts-3.5
2021-01-29T17:03:11,705   copying and adjusting bin/fasta-identity-table.py -> build/scripts-3.5
2021-01-29T17:03:11,715   copying and adjusting bin/fasta-ids.py -> build/scripts-3.5
2021-01-29T17:03:11,719   copying and adjusting bin/fasta-join.py -> build/scripts-3.5
2021-01-29T17:03:11,724   copying and adjusting bin/fasta-lengths.py -> build/scripts-3.5
2021-01-29T17:03:11,727   copying and adjusting bin/fasta-sequences.py -> build/scripts-3.5
2021-01-29T17:03:11,730   copying and adjusting bin/fasta-sort.py -> build/scripts-3.5
2021-01-29T17:03:11,733   copying and adjusting bin/fasta-split-by-id.py -> build/scripts-3.5
2021-01-29T17:03:11,737   copying and adjusting bin/fasta-subset.py -> build/scripts-3.5
2021-01-29T17:03:11,741   copying and adjusting bin/fasta-subtraction.py -> build/scripts-3.5
2021-01-29T17:03:11,744   copying and adjusting bin/fasta-to-phylip.py -> build/scripts-3.5
2021-01-29T17:03:11,749   copying and adjusting bin/fasta-variable-sites.py -> build/scripts-3.5
2021-01-29T17:03:11,755   copying and adjusting bin/filter-fasta-by-complexity.py -> build/scripts-3.5
2021-01-29T17:03:11,759   copying and adjusting bin/filter-fasta-by-taxonomy.py -> build/scripts-3.5
2021-01-29T17:03:11,765   copying and adjusting bin/filter-fasta.py -> build/scripts-3.5
2021-01-29T17:03:11,769   copying and adjusting bin/filter-hits-to-fasta.py -> build/scripts-3.5
2021-01-29T17:03:11,773   copying and adjusting bin/filter-reads-alignments.py -> build/scripts-3.5
2021-01-29T17:03:11,778   copying and adjusting bin/filter-sam.py -> build/scripts-3.5
2021-01-29T17:03:11,782   copying and adjusting bin/find-hits.py -> build/scripts-3.5
2021-01-29T17:03:11,786   copying and adjusting bin/format-fasta.py -> build/scripts-3.5
2021-01-29T17:03:11,791   copying and adjusting bin/genome-protein-summary.py -> build/scripts-3.5
2021-01-29T17:03:11,798   copying and adjusting bin/get-features.py -> build/scripts-3.5
2021-01-29T17:03:11,803   copying and adjusting bin/get-hosts.py -> build/scripts-3.5
2021-01-29T17:03:11,807   copying and adjusting bin/get-reads.py -> build/scripts-3.5
2021-01-29T17:03:11,812   copying and adjusting bin/get-taxonomy.py -> build/scripts-3.5
2021-01-29T17:03:11,815   copying and adjusting bin/graph-evalues.py -> build/scripts-3.5
2021-01-29T17:03:11,819   copying and adjusting bin/local-align.py -> build/scripts-3.5
2021-01-29T17:03:11,822   copying and adjusting bin/make-consensus.py -> build/scripts-3.5
2021-01-29T17:03:11,828   copying and adjusting bin/make-fasta-database.py -> build/scripts-3.5
2021-01-29T17:03:11,832   copying and adjusting bin/make-protein-database.py -> build/scripts-3.5
2021-01-29T17:03:11,839   copying and adjusting bin/ncbi-fetch-id.py -> build/scripts-3.5
2021-01-29T17:03:11,844   copying and adjusting bin/newick-to-ascii.py -> build/scripts-3.5
2021-01-29T17:03:11,848   copying and adjusting bin/noninteractive-alignment-panel.py -> build/scripts-3.5
2021-01-29T17:03:11,854   copying and adjusting bin/parse-genbank-flat-file.py -> build/scripts-3.5
2021-01-29T17:03:11,858   copying and adjusting bin/position-summary.py -> build/scripts-3.5
2021-01-29T17:03:11,861   copying bin/pre-commit.sh -> build/scripts-3.5
2021-01-29T17:03:11,867   copying and adjusting bin/print-blast-xml-for-derek.py -> build/scripts-3.5
2021-01-29T17:03:11,871   copying and adjusting bin/print-blast-xml.py -> build/scripts-3.5
2021-01-29T17:03:11,875   copying and adjusting bin/print-read-lengths.py -> build/scripts-3.5
2021-01-29T17:03:11,880   copying and adjusting bin/proteins-to-pathogens.py -> build/scripts-3.5
2021-01-29T17:03:11,887   copying and adjusting bin/proteins-to-pathogens-civ.py -> build/scripts-3.5
2021-01-29T17:03:11,892   copying and adjusting bin/randomize-fasta.py -> build/scripts-3.5
2021-01-29T17:03:11,895   copying and adjusting bin/read-blast-json.py -> build/scripts-3.5
2021-01-29T17:03:11,898   copying and adjusting bin/read-blast-xml.py -> build/scripts-3.5
2021-01-29T17:03:11,902   copying and adjusting bin/relabel-newick-tree.py -> build/scripts-3.5
2021-01-29T17:03:11,905   copying and adjusting bin/run-bwa.py -> build/scripts-3.5
2021-01-29T17:03:11,910   copying and adjusting bin/run-bowtie2.py -> build/scripts-3.5
2021-01-29T17:03:11,918   copying and adjusting bin/sam-coverage.py -> build/scripts-3.5
2021-01-29T17:03:11,923   copying and adjusting bin/sam-coverage-depth.py -> build/scripts-3.5
2021-01-29T17:03:11,929   copying and adjusting bin/sam-to-fasta-alignment.py -> build/scripts-3.5
2021-01-29T17:03:11,932   copying and adjusting bin/sam-reference-read-counts.py -> build/scripts-3.5
2021-01-29T17:03:11,936   copying and adjusting bin/sam-references.py -> build/scripts-3.5
2021-01-29T17:03:11,939   copying and adjusting bin/sff-to-fastq.py -> build/scripts-3.5
2021-01-29T17:03:11,943   copying and adjusting bin/split-fasta-by-adaptors.py -> build/scripts-3.5
2021-01-29T17:03:11,947   copying and adjusting bin/subset-protein-database.py -> build/scripts-3.5
2021-01-29T17:03:11,952   copying and adjusting bin/summarize-fasta-bases.py -> build/scripts-3.5
2021-01-29T17:03:11,957   copying and adjusting bin/summarize-reads.py -> build/scripts-3.5
2021-01-29T17:03:11,962   copying and adjusting bin/translate.py -> build/scripts-3.5
2021-01-29T17:03:11,966   copying and adjusting bin/trim-primers.py -> build/scripts-3.5
2021-01-29T17:03:11,971   copying and adjusting bin/trim-reads.py -> build/scripts-3.5
2021-01-29T17:03:11,975   copying and adjusting bin/write-htcondor-job-spec.py -> build/scripts-3.5
2021-01-29T17:03:11,980   changing mode of build/scripts-3.5/aa-info.py from 644 to 755
2021-01-29T17:03:11,982   changing mode of build/scripts-3.5/aa-to-dna.py from 644 to 755
2021-01-29T17:03:11,983   changing mode of build/scripts-3.5/aa-to-properties.py from 644 to 755
2021-01-29T17:03:11,984   changing mode of build/scripts-3.5/adaptor-distances.py from 644 to 755
2021-01-29T17:03:11,985   changing mode of build/scripts-3.5/alignment-panel-civ.py from 644 to 755
2021-01-29T17:03:11,987   changing mode of build/scripts-3.5/alignments-per-read.py from 644 to 755
2021-01-29T17:03:11,988   changing mode of build/scripts-3.5/bit-score-to-e-value.py from 644 to 755
2021-01-29T17:03:11,989   changing mode of build/scripts-3.5/cat-json-blast-records.py from 644 to 755
2021-01-29T17:03:11,990   changing mode of build/scripts-3.5/check-fasta-json-blast-consistency.py from 644 to 755
2021-01-29T17:03:11,990   changing mode of build/scripts-3.5/codon-distance.py from 644 to 755
2021-01-29T17:03:11,991   changing mode of build/scripts-3.5/compare-consensuses.py from 644 to 755
2021-01-29T17:03:11,992   changing mode of build/scripts-3.5/compare-sequences.py from 644 to 755
2021-01-29T17:03:11,992   changing mode of build/scripts-3.5/convert-blast-xml-to-json.py from 644 to 755
2021-01-29T17:03:11,993   changing mode of build/scripts-3.5/convert-diamond-to-json.py from 644 to 755
2021-01-29T17:03:11,994   changing mode of build/scripts-3.5/convert-diamond-to-sam.py from 644 to 755
2021-01-29T17:03:11,994   changing mode of build/scripts-3.5/create-newick-relabeling-output.py from 644 to 755
2021-01-29T17:03:11,995   changing mode of build/scripts-3.5/dark-matter-version.py from 644 to 755
2021-01-29T17:03:11,995   changing mode of build/scripts-3.5/describe-protein-database.py from 644 to 755
2021-01-29T17:03:11,996   changing mode of build/scripts-3.5/dna-to-aa.py from 644 to 755
2021-01-29T17:03:11,997   changing mode of build/scripts-3.5/e-value-to-bit-score.py from 644 to 755
2021-01-29T17:03:11,997   changing mode of build/scripts-3.5/extract-ORFs.py from 644 to 755
2021-01-29T17:03:11,998   changing mode of build/scripts-3.5/fasta-base-indices.py from 644 to 755
2021-01-29T17:03:11,999   changing mode of build/scripts-3.5/fasta-count.py from 644 to 755
2021-01-29T17:03:11,999   changing mode of build/scripts-3.5/fasta-identity-table.py from 644 to 755
2021-01-29T17:03:11,1000   changing mode of build/scripts-3.5/fasta-ids.py from 644 to 755
2021-01-29T17:03:12,000   changing mode of build/scripts-3.5/fasta-join.py from 644 to 755
2021-01-29T17:03:12,001   changing mode of build/scripts-3.5/fasta-lengths.py from 644 to 755
2021-01-29T17:03:12,002   changing mode of build/scripts-3.5/fasta-sequences.py from 644 to 755
2021-01-29T17:03:12,002   changing mode of build/scripts-3.5/fasta-sort.py from 644 to 755
2021-01-29T17:03:12,003   changing mode of build/scripts-3.5/fasta-split-by-id.py from 644 to 755
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2021-01-29T17:03:12,005   changing mode of build/scripts-3.5/fasta-to-phylip.py from 644 to 755
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2021-01-29T17:03:12,007   changing mode of build/scripts-3.5/filter-fasta-by-taxonomy.py from 644 to 755
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2021-01-29T17:03:12,009   changing mode of build/scripts-3.5/filter-sam.py from 644 to 755
2021-01-29T17:03:12,010   changing mode of build/scripts-3.5/find-hits.py from 644 to 755
2021-01-29T17:03:12,011   changing mode of build/scripts-3.5/format-fasta.py from 644 to 755
2021-01-29T17:03:12,011   changing mode of build/scripts-3.5/genome-protein-summary.py from 644 to 755
2021-01-29T17:03:12,012   changing mode of build/scripts-3.5/get-features.py from 644 to 755
2021-01-29T17:03:12,013   changing mode of build/scripts-3.5/get-hosts.py from 644 to 755
2021-01-29T17:03:12,013   changing mode of build/scripts-3.5/get-reads.py from 644 to 755
2021-01-29T17:03:12,014   changing mode of build/scripts-3.5/get-taxonomy.py from 644 to 755
2021-01-29T17:03:12,015   changing mode of build/scripts-3.5/graph-evalues.py from 644 to 755
2021-01-29T17:03:12,015   changing mode of build/scripts-3.5/local-align.py from 644 to 755
2021-01-29T17:03:12,016   changing mode of build/scripts-3.5/make-consensus.py from 644 to 755
2021-01-29T17:03:12,017   changing mode of build/scripts-3.5/make-fasta-database.py from 644 to 755
2021-01-29T17:03:12,017   changing mode of build/scripts-3.5/make-protein-database.py from 644 to 755
2021-01-29T17:03:12,018   changing mode of build/scripts-3.5/ncbi-fetch-id.py from 644 to 755
2021-01-29T17:03:12,018   changing mode of build/scripts-3.5/newick-to-ascii.py from 644 to 755
2021-01-29T17:03:12,019   changing mode of build/scripts-3.5/noninteractive-alignment-panel.py from 644 to 755
2021-01-29T17:03:12,020   changing mode of build/scripts-3.5/parse-genbank-flat-file.py from 644 to 755
2021-01-29T17:03:12,020   changing mode of build/scripts-3.5/position-summary.py from 644 to 755
2021-01-29T17:03:12,021   changing mode of build/scripts-3.5/print-blast-xml-for-derek.py from 644 to 755
2021-01-29T17:03:12,022   changing mode of build/scripts-3.5/print-blast-xml.py from 644 to 755
2021-01-29T17:03:12,022   changing mode of build/scripts-3.5/print-read-lengths.py from 644 to 755
2021-01-29T17:03:12,023   changing mode of build/scripts-3.5/proteins-to-pathogens.py from 644 to 755
2021-01-29T17:03:12,024   changing mode of build/scripts-3.5/proteins-to-pathogens-civ.py from 644 to 755
2021-01-29T17:03:12,024   changing mode of build/scripts-3.5/randomize-fasta.py from 644 to 755
2021-01-29T17:03:12,025   changing mode of build/scripts-3.5/read-blast-json.py from 644 to 755
2021-01-29T17:03:12,026   changing mode of build/scripts-3.5/read-blast-xml.py from 644 to 755
2021-01-29T17:03:12,026   changing mode of build/scripts-3.5/relabel-newick-tree.py from 644 to 755
2021-01-29T17:03:12,027   changing mode of build/scripts-3.5/run-bwa.py from 644 to 755
2021-01-29T17:03:12,028   changing mode of build/scripts-3.5/run-bowtie2.py from 644 to 755
2021-01-29T17:03:12,028   changing mode of build/scripts-3.5/sam-coverage.py from 644 to 755
2021-01-29T17:03:12,029   changing mode of build/scripts-3.5/sam-coverage-depth.py from 644 to 755
2021-01-29T17:03:12,030   changing mode of build/scripts-3.5/sam-to-fasta-alignment.py from 644 to 755
2021-01-29T17:03:12,030   changing mode of build/scripts-3.5/sam-reference-read-counts.py from 644 to 755
2021-01-29T17:03:12,031   changing mode of build/scripts-3.5/sam-references.py from 644 to 755
2021-01-29T17:03:12,032   changing mode of build/scripts-3.5/sff-to-fastq.py from 644 to 755
2021-01-29T17:03:12,032   changing mode of build/scripts-3.5/split-fasta-by-adaptors.py from 644 to 755
2021-01-29T17:03:12,033   changing mode of build/scripts-3.5/subset-protein-database.py from 644 to 755
2021-01-29T17:03:12,034   changing mode of build/scripts-3.5/summarize-fasta-bases.py from 644 to 755
2021-01-29T17:03:12,034   changing mode of build/scripts-3.5/summarize-reads.py from 644 to 755
2021-01-29T17:03:12,035   changing mode of build/scripts-3.5/translate.py from 644 to 755
2021-01-29T17:03:12,036   changing mode of build/scripts-3.5/trim-primers.py from 644 to 755
2021-01-29T17:03:12,036   changing mode of build/scripts-3.5/trim-reads.py from 644 to 755
2021-01-29T17:03:12,037   changing mode of build/scripts-3.5/write-htcondor-job-spec.py from 644 to 755
2021-01-29T17:03:12,044   installing to build/bdist.linux-armv7l/wheel
2021-01-29T17:03:12,045   running install
2021-01-29T17:03:12,047   running install_lib
2021-01-29T17:03:12,060   creating build/bdist.linux-armv7l
2021-01-29T17:03:12,060   creating build/bdist.linux-armv7l/wheel
2021-01-29T17:03:12,066   creating build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,068   copying build/lib/dark/orfs.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,073   copying build/lib/dark/hsp.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,080   creating build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,082   copying build/lib/dark/blast/hsp.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,087   copying build/lib/dark/blast/params.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,092   copying build/lib/dark/blast/alignments.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,099   copying build/lib/dark/blast/score.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,105   copying build/lib/dark/blast/hacks.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,111   copying build/lib/dark/blast/conversion.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,118   copying build/lib/dark/blast/__init__.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,123   copying build/lib/dark/blast/records.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-01-29T17:03:12,129   copying build/lib/dark/analyze_reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,135   copying build/lib/dark/dna.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,143   copying build/lib/dark/titles.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,152   creating build/bdist.linux-armv7l/wheel/dark/diamond
2021-01-29T17:03:12,155   copying build/lib/dark/diamond/hsp.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-01-29T17:03:12,162   copying build/lib/dark/diamond/alignments.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-01-29T17:03:12,169   copying build/lib/dark/diamond/conversion.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-01-29T17:03:12,176   copying build/lib/dark/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-01-29T17:03:12,179   copying build/lib/dark/diamond/sam.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-01-29T17:03:12,185   copying build/lib/dark/diamond/run.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-01-29T17:03:12,190   copying build/lib/dark/bowtie2.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,197   copying build/lib/dark/sequence.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,203   copying build/lib/dark/utils.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,210   copying build/lib/dark/colors.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,216   copying build/lib/dark/alignments.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,224   copying build/lib/dark/score.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,229   copying build/lib/dark/local_align.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,236   copying build/lib/dark/consensus.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,241   copying build/lib/dark/graphics.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,249   copying build/lib/dark/fastq.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,254   copying build/lib/dark/aa.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,263   copying build/lib/dark/summarize.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,269   copying build/lib/dark/fasta.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,277   copying build/lib/dark/database.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,281   copying build/lib/dark/aligners.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,285   copying build/lib/dark/__init__.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,289   copying build/lib/dark/fasta_ss.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,294   copying build/lib/dark/sam.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,303   copying build/lib/dark/codonDistance.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,309   copying build/lib/dark/process.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,316   copying build/lib/dark/filter.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,322   copying build/lib/dark/ncbidb.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,326   copying build/lib/dark/html.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,332   copying build/lib/dark/dimension.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,337   copying build/lib/dark/proteins.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,347   copying build/lib/dark/simplify.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,353   copying build/lib/dark/baseimage.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,358   copying build/lib/dark/fpcache.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,362   copying build/lib/dark/features.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,368   copying build/lib/dark/ipynb.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,372   copying build/lib/dark/errors.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,377   copying build/lib/dark/cigar.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,383   copying build/lib/dark/entrez.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,389   copying build/lib/dark/distance.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,395   copying build/lib/dark/mutations.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,402   copying build/lib/dark/reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,412   copying build/lib/dark/genomes.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,420   creating build/bdist.linux-armv7l/wheel/dark/civ
2021-01-29T17:03:12,423   copying build/lib/dark/civ/graphics.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-01-29T17:03:12,432   copying build/lib/dark/civ/__init__.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-01-29T17:03:12,437   copying build/lib/dark/civ/html.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-01-29T17:03:12,442   copying build/lib/dark/civ/proteins.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-01-29T17:03:12,457   copying build/lib/dark/taxonomy.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,466   copying build/lib/dark/genbank.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,473   copying build/lib/dark/btop.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,479   copying build/lib/dark/intervals.py -> build/bdist.linux-armv7l/wheel/dark
2021-01-29T17:03:12,484   running install_egg_info
2021-01-29T17:03:12,529   running egg_info
2021-01-29T17:03:12,531   writing dark_matter.egg-info/PKG-INFO
2021-01-29T17:03:12,536   writing requirements to dark_matter.egg-info/requires.txt
2021-01-29T17:03:12,539   writing dependency_links to dark_matter.egg-info/dependency_links.txt
2021-01-29T17:03:12,542   writing top-level names to dark_matter.egg-info/top_level.txt
2021-01-29T17:03:12,592   reading manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-01-29T17:03:12,633   writing manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-01-29T17:03:12,638   Copying dark_matter.egg-info to build/bdist.linux-armv7l/wheel/dark_matter-3.1.85-py3.5.egg-info
2021-01-29T17:03:12,668   running install_scripts
2021-01-29T17:03:12,796   creating build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data
2021-01-29T17:03:12,797   creating build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,800   copying build/scripts-3.5/noninteractive-alignment-panel.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,807   copying build/scripts-3.5/fasta-identity-table.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,813   copying build/scripts-3.5/compare-consensuses.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,819   copying build/scripts-3.5/genome-protein-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,825   copying build/scripts-3.5/proteins-to-pathogens.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,832   copying build/scripts-3.5/filter-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,838   copying build/scripts-3.5/download-genbank.sh -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,844   copying build/scripts-3.5/compare-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,850   copying build/scripts-3.5/fasta-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,854   copying build/scripts-3.5/filter-fasta-by-complexity.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,858   copying build/scripts-3.5/cat-json-blast-records.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,862   copying build/scripts-3.5/sam-coverage.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,868   copying build/scripts-3.5/make-fasta-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,874   copying build/scripts-3.5/filter-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,880   copying build/scripts-3.5/read-blast-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,886   copying build/scripts-3.5/relabel-newick-tree.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,892   copying build/scripts-3.5/fasta-base-indices.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,898   copying build/scripts-3.5/sam-coverage-depth.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,904   copying build/scripts-3.5/create-newick-relabeling-output.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,910   copying build/scripts-3.5/aa-info.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,915   copying build/scripts-3.5/fasta-subset.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,921   copying build/scripts-3.5/print-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,926   copying build/scripts-3.5/subset-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,932   copying build/scripts-3.5/summarize-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,938   copying build/scripts-3.5/convert-diamond-to-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,944   copying build/scripts-3.5/format-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,950   copying build/scripts-3.5/adaptor-distances.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,956   copying build/scripts-3.5/fasta-variable-sites.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,962   copying build/scripts-3.5/local-align.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,968   copying build/scripts-3.5/proteins-to-pathogens-civ.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,975   copying build/scripts-3.5/print-blast-xml-for-derek.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,981   copying build/scripts-3.5/find-hits.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,987   copying build/scripts-3.5/pre-commit.sh -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,992   copying build/scripts-3.5/codon-distance.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:12,998   copying build/scripts-3.5/e-value-to-bit-score.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,004   copying build/scripts-3.5/split-fasta-by-adaptors.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,010   copying build/scripts-3.5/fasta-ids.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,016   copying build/scripts-3.5/position-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,021   copying build/scripts-3.5/alignments-per-read.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,027   copying build/scripts-3.5/run-bwa.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,033   copying build/scripts-3.5/fasta-join.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,039   copying build/scripts-3.5/randomize-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,044   copying build/scripts-3.5/sam-references.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
2021-01-29T17:03:13,050   copying build/scripts-3.5/filter-hits-to-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.data/scripts
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2021-01-29T17:03:13,454   creating build/bdist.linux-armv7l/wheel/dark_matter-3.1.85.dist-info/WHEEL
2021-01-29T17:03:14,431   Building wheel for dark-matter (setup.py): finished with status 'done'
2021-01-29T17:03:14,441   Created wheel for dark-matter: filename=dark_matter-3.1.85-py3-none-any.whl size=316334 sha256=fcbcce73e17df9b18ac877fd7609b6789f65d897e8603c33d3f87907bef87e47
2021-01-29T17:03:14,442   Stored in directory: /tmp/pip-ephem-wheel-cache-jw9n35zi/wheels/18/c1/a4/94829a979c61fac2754461949ca4e5c81d58a56e76fa891bb2
2021-01-29T17:03:14,474 Successfully built dark-matter
2021-01-29T17:03:14,533 Removed build tracker: '/tmp/pip-req-tracker-lragw5c2'