2021-02-02T13:55:04,962 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-02-02T13:55:05,536 Created temporary directory: /tmp/pip-ephem-wheel-cache-a8817mh_
2021-02-02T13:55:05,540 Created temporary directory: /tmp/pip-req-tracker-_vji60ap
2021-02-02T13:55:05,541 Initialized build tracking at /tmp/pip-req-tracker-_vji60ap
2021-02-02T13:55:05,541 Created build tracker: /tmp/pip-req-tracker-_vji60ap
2021-02-02T13:55:05,542 Entered build tracker: /tmp/pip-req-tracker-_vji60ap
2021-02-02T13:55:05,543 Created temporary directory: /tmp/pip-wheel-4ucmx3d_
2021-02-02T13:55:05,605 1 location(s) to search for versions of jkbio:
2021-02-02T13:55:05,605 * https://pypi.org/simple/jkbio/
2021-02-02T13:55:05,605 Fetching project page and analyzing links: https://pypi.org/simple/jkbio/
2021-02-02T13:55:05,607 Getting page https://pypi.org/simple/jkbio/
2021-02-02T13:55:05,611 Found index url https://pypi.org/simple
2021-02-02T13:55:05,920   Found link https://files.pythonhosted.org/packages/6d/be/94b8a17e5e54685d15337dbd7b6f4d2b0ced8ff88169dfc41d30d091a3b4/JKBio-1.0-py3-none-any.whl#sha256=486d39e602c0a1948b29a59008ff9e072b918673942e1a4e6024f8d03c6bd76d (from https://pypi.org/simple/jkbio/) (requires-python:>=3.5), version: 1.0
2021-02-02T13:55:05,922   Found link https://files.pythonhosted.org/packages/c5/15/75142c59b9fb0ee1fd05fb0014017dc28d6d857eb91a59d8dc757809930b/JKBio-1.0.tar.gz#sha256=82c04f20700333803094711800386dd64e331ab9fae754e8f20328e7ca7d7a69 (from https://pypi.org/simple/jkbio/) (requires-python:>=3.5), version: 1.0
2021-02-02T13:55:05,923   Found link https://files.pythonhosted.org/packages/72/25/43430c82dcb7b52598670347ff5a9de786b1775556a2305c8b225df31904/JKBio-1.1.tar.gz#sha256=6dd5b6933fb2cd9016253ebe4492fd380e2d0764a6f5ba91e170d632a576d641 (from https://pypi.org/simple/jkbio/) (requires-python:>=3.5), version: 1.1
2021-02-02T13:55:05,926 Given no hashes to check 1 links for project 'jkbio': discarding no candidates
2021-02-02T13:55:05,954 Collecting jkbio==1.1
2021-02-02T13:55:05,957   Created temporary directory: /tmp/pip-unpack-89s59ssa
2021-02-02T13:55:06,174   Downloading JKBio-1.1.tar.gz (28 kB)
2021-02-02T13:55:06,276   Added jkbio==1.1 from https://files.pythonhosted.org/packages/72/25/43430c82dcb7b52598670347ff5a9de786b1775556a2305c8b225df31904/JKBio-1.1.tar.gz#sha256=6dd5b6933fb2cd9016253ebe4492fd380e2d0764a6f5ba91e170d632a576d641 to build tracker '/tmp/pip-req-tracker-_vji60ap'
2021-02-02T13:55:06,279     Running setup.py (path:/tmp/pip-wheel-4ucmx3d_/jkbio_e6773f44e8c248f69f59c2d73c45a7e9/setup.py) egg_info for package jkbio
2021-02-02T13:55:06,281     Created temporary directory: /tmp/pip-pip-egg-info-7w7t8m4v
2021-02-02T13:55:06,283     Running command python setup.py egg_info
2021-02-02T13:55:08,263     running egg_info
2021-02-02T13:55:08,267     creating /tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info
2021-02-02T13:55:08,270     writing top-level names to /tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info/top_level.txt
2021-02-02T13:55:08,271     writing dependency_links to /tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info/dependency_links.txt
2021-02-02T13:55:08,274     writing requirements to /tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info/requires.txt
2021-02-02T13:55:08,276     writing /tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info/PKG-INFO
2021-02-02T13:55:08,281     writing manifest file '/tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info/SOURCES.txt'
2021-02-02T13:55:08,581     package init file 'cell_line_mapping-master/python/__init__.py' not found (or not a regular file)
2021-02-02T13:55:08,583     package init file 'epigenetics/rose/__init__.py' not found (or not a regular file)
2021-02-02T13:55:08,587     reading manifest file '/tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info/SOURCES.txt'
2021-02-02T13:55:08,593     writing manifest file '/tmp/pip-pip-egg-info-7w7t8m4v/JKBio.egg-info/SOURCES.txt'
2021-02-02T13:55:08,595     You might want to install Bowtie2, samtools, bwa and R to be able to use all functions of this package:
2021-02-02T13:55:08,596       http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
2021-02-02T13:55:08,597       http://www.htslib.org/
2021-02-02T13:55:08,597       https://github.com/lh3/bwa

2021-02-02T13:55:08,599     once R is installed you need to have installed erccdashboard, GSEABase GSVA, DESeq2 to have access to aall the functions
2021-02-02T13:55:08,599     Finished!
2021-02-02T13:55:08,717   Source in /tmp/pip-wheel-4ucmx3d_/jkbio_e6773f44e8c248f69f59c2d73c45a7e9 has version 1.1, which satisfies requirement jkbio==1.1 from https://files.pythonhosted.org/packages/72/25/43430c82dcb7b52598670347ff5a9de786b1775556a2305c8b225df31904/JKBio-1.1.tar.gz#sha256=6dd5b6933fb2cd9016253ebe4492fd380e2d0764a6f5ba91e170d632a576d641
2021-02-02T13:55:08,719   Removed jkbio==1.1 from https://files.pythonhosted.org/packages/72/25/43430c82dcb7b52598670347ff5a9de786b1775556a2305c8b225df31904/JKBio-1.1.tar.gz#sha256=6dd5b6933fb2cd9016253ebe4492fd380e2d0764a6f5ba91e170d632a576d641 from build tracker '/tmp/pip-req-tracker-_vji60ap'
2021-02-02T13:55:08,730 Created temporary directory: /tmp/pip-unpack-admyvvzu
2021-02-02T13:55:08,731 Building wheels for collected packages: jkbio
2021-02-02T13:55:08,738   Created temporary directory: /tmp/pip-wheel-asyqqg5d
2021-02-02T13:55:08,739   Building wheel for jkbio (setup.py): started
2021-02-02T13:55:08,739   Destination directory: /tmp/pip-wheel-asyqqg5d
2021-02-02T13:55:08,740   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4ucmx3d_/jkbio_e6773f44e8c248f69f59c2d73c45a7e9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4ucmx3d_/jkbio_e6773f44e8c248f69f59c2d73c45a7e9/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-asyqqg5d
2021-02-02T13:55:10,726   running bdist_wheel
2021-02-02T13:55:10,739   running build
2021-02-02T13:55:10,740   running build_py
2021-02-02T13:55:11,028   package init file 'cell_line_mapping-master/python/__init__.py' not found (or not a regular file)
2021-02-02T13:55:11,030   creating build
2021-02-02T13:55:11,031   creating build/lib
2021-02-02T13:55:11,032   creating build/lib/cell_line_mapping-master
2021-02-02T13:55:11,033   creating build/lib/cell_line_mapping-master/python
2021-02-02T13:55:11,035   copying cell_line_mapping-master/python/setup.py -> build/lib/cell_line_mapping-master/python
2021-02-02T13:55:11,037   package init file 'epigenetics/rose/__init__.py' not found (or not a regular file)
2021-02-02T13:55:11,039   creating build/lib/epigenetics
2021-02-02T13:55:11,040   creating build/lib/epigenetics/rose
2021-02-02T13:55:11,042   copying epigenetics/rose/ROSE_main_turbo.py -> build/lib/epigenetics/rose
2021-02-02T13:55:11,046   copying epigenetics/rose/ROSE_utils.py -> build/lib/epigenetics/rose
2021-02-02T13:55:11,050   copying epigenetics/rose/ROSE_geneMapper.py -> build/lib/epigenetics/rose
2021-02-02T13:55:11,054   copying epigenetics/rose/ROSE_bamToGFF.py -> build/lib/epigenetics/rose
2021-02-02T13:55:11,058   copying epigenetics/rose/ROSE_bamToGFF_turbo.py -> build/lib/epigenetics/rose
2021-02-02T13:55:11,061   copying epigenetics/rose/ROSE_main.py -> build/lib/epigenetics/rose
2021-02-02T13:55:11,076   installing to build/bdist.linux-armv7l/wheel
2021-02-02T13:55:11,077   running install
2021-02-02T13:55:11,081   running install_lib
2021-02-02T13:55:11,092   creating build/bdist.linux-armv7l
2021-02-02T13:55:11,092   creating build/bdist.linux-armv7l/wheel
2021-02-02T13:55:11,095   creating build/bdist.linux-armv7l/wheel/cell_line_mapping-master
2021-02-02T13:55:11,097   creating build/bdist.linux-armv7l/wheel/cell_line_mapping-master/python
2021-02-02T13:55:11,099   copying build/lib/cell_line_mapping-master/python/setup.py -> build/bdist.linux-armv7l/wheel/cell_line_mapping-master/python
2021-02-02T13:55:11,103   creating build/bdist.linux-armv7l/wheel/epigenetics
2021-02-02T13:55:11,105   creating build/bdist.linux-armv7l/wheel/epigenetics/rose
2021-02-02T13:55:11,107   copying build/lib/epigenetics/rose/ROSE_main_turbo.py -> build/bdist.linux-armv7l/wheel/epigenetics/rose
2021-02-02T13:55:11,112   copying build/lib/epigenetics/rose/ROSE_utils.py -> build/bdist.linux-armv7l/wheel/epigenetics/rose
2021-02-02T13:55:11,119   copying build/lib/epigenetics/rose/ROSE_geneMapper.py -> build/bdist.linux-armv7l/wheel/epigenetics/rose
2021-02-02T13:55:11,124   copying build/lib/epigenetics/rose/ROSE_bamToGFF.py -> build/bdist.linux-armv7l/wheel/epigenetics/rose
2021-02-02T13:55:11,130   copying build/lib/epigenetics/rose/ROSE_bamToGFF_turbo.py -> build/bdist.linux-armv7l/wheel/epigenetics/rose
2021-02-02T13:55:11,135   copying build/lib/epigenetics/rose/ROSE_main.py -> build/bdist.linux-armv7l/wheel/epigenetics/rose
2021-02-02T13:55:11,141   running install_egg_info
2021-02-02T13:55:11,183   running egg_info
2021-02-02T13:55:11,184   writing requirements to JKBio.egg-info/requires.txt
2021-02-02T13:55:11,187   writing top-level names to JKBio.egg-info/top_level.txt
2021-02-02T13:55:11,188   writing JKBio.egg-info/PKG-INFO
2021-02-02T13:55:11,193   writing dependency_links to JKBio.egg-info/dependency_links.txt
2021-02-02T13:55:11,202   reading manifest file 'JKBio.egg-info/SOURCES.txt'
2021-02-02T13:55:11,210   writing manifest file 'JKBio.egg-info/SOURCES.txt'
2021-02-02T13:55:11,213   Copying JKBio.egg-info to build/bdist.linux-armv7l/wheel/JKBio-1.1-py3.5.egg-info
2021-02-02T13:55:11,358   running install_scripts
2021-02-02T13:55:11,584   creating build/bdist.linux-armv7l/wheel/JKBio-1.1.dist-info/WHEEL
2021-02-02T13:55:11,654   You might want to install Bowtie2, samtools, bwa and R to be able to use all functions of this package:
2021-02-02T13:55:11,654     http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
2021-02-02T13:55:11,655     http://www.htslib.org/
2021-02-02T13:55:11,655     https://github.com/lh3/bwa

2021-02-02T13:55:11,656   once R is installed you need to have installed erccdashboard, GSEABase GSVA, DESeq2 to have access to aall the functions
2021-02-02T13:55:11,657   Finished!
2021-02-02T13:55:11,798   Building wheel for jkbio (setup.py): finished with status 'done'
2021-02-02T13:55:11,803   Created wheel for jkbio: filename=JKBio-1.1-py3-none-any.whl size=32992 sha256=908de84f0271aafe7451203ba6445e312926044a4c984560add898c1dcdc2200
2021-02-02T13:55:11,803   Stored in directory: /tmp/pip-ephem-wheel-cache-a8817mh_/wheels/03/54/a9/0e1ebb12fb11bb70e771ae724a27465ecc1249e6aac907887c
2021-02-02T13:55:11,819 Successfully built jkbio
2021-02-02T13:55:11,825 Removed build tracker: '/tmp/pip-req-tracker-_vji60ap'