2021-02-11T12:08:17,785 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-02-11T12:08:18,467 Created temporary directory: /tmp/pip-ephem-wheel-cache-6efw8rps
2021-02-11T12:08:18,472 Created temporary directory: /tmp/pip-req-tracker-rxaqybw8
2021-02-11T12:08:18,472 Initialized build tracking at /tmp/pip-req-tracker-rxaqybw8
2021-02-11T12:08:18,473 Created build tracker: /tmp/pip-req-tracker-rxaqybw8
2021-02-11T12:08:18,473 Entered build tracker: /tmp/pip-req-tracker-rxaqybw8
2021-02-11T12:08:18,475 Created temporary directory: /tmp/pip-wheel-_xerw1no
2021-02-11T12:08:18,539 1 location(s) to search for versions of adaptivepele:
2021-02-11T12:08:18,539 * https://pypi.org/simple/adaptivepele/
2021-02-11T12:08:18,540 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2021-02-11T12:08:18,542 Getting page https://pypi.org/simple/adaptivepele/
2021-02-11T12:08:18,546 Found index url https://pypi.org/simple
2021-02-11T12:08:18,868   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2021-02-11T12:08:18,869   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2021-02-11T12:08:18,870   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2021-02-11T12:08:18,871   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2021-02-11T12:08:18,872   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2021-02-11T12:08:18,872   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb (from https://pypi.org/simple/adaptivepele/), version: 1.7
2021-02-11T12:08:18,901 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2021-02-11T12:08:18,933 Collecting adaptivepele==1.7
2021-02-11T12:08:18,936   Created temporary directory: /tmp/pip-unpack-rmeixu8e
2021-02-11T12:08:19,859   Downloading AdaptivePELE-1.7.tar.gz (7.0 MB)
2021-02-11T12:08:26,331   Added adaptivepele==1.7 from https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb to build tracker '/tmp/pip-req-tracker-rxaqybw8'
2021-02-11T12:08:26,334     Running setup.py (path:/tmp/pip-wheel-_xerw1no/adaptivepele_7afdfd2ad832475893bb12a0852c75c4/setup.py) egg_info for package adaptivepele
2021-02-11T12:08:26,336     Created temporary directory: /tmp/pip-pip-egg-info-6jklb7u6
2021-02-11T12:08:26,337     Running command python setup.py egg_info
2021-02-11T12:08:30,213     running egg_info
2021-02-11T12:08:30,219     creating /tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info
2021-02-11T12:08:30,222     writing top-level names to /tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info/top_level.txt
2021-02-11T12:08:30,225     writing /tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info/PKG-INFO
2021-02-11T12:08:30,230     writing dependency_links to /tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info/dependency_links.txt
2021-02-11T12:08:30,233     writing requirements to /tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info/requires.txt
2021-02-11T12:08:30,238     writing manifest file '/tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info/SOURCES.txt'
2021-02-11T12:08:30,607     reading manifest file '/tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info/SOURCES.txt'
2021-02-11T12:08:30,610     reading manifest template 'MANIFEST.in'
2021-02-11T12:08:30,727     writing manifest file '/tmp/pip-pip-egg-info-6jklb7u6/AdaptivePELE.egg-info/SOURCES.txt'
2021-02-11T12:08:30,967   Source in /tmp/pip-wheel-_xerw1no/adaptivepele_7afdfd2ad832475893bb12a0852c75c4 has version 1.7, which satisfies requirement adaptivepele==1.7 from https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb
2021-02-11T12:08:30,968   Removed adaptivepele==1.7 from https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb from build tracker '/tmp/pip-req-tracker-rxaqybw8'
2021-02-11T12:08:30,978 Created temporary directory: /tmp/pip-unpack-yjswti73
2021-02-11T12:08:30,979 Building wheels for collected packages: adaptivepele
2021-02-11T12:08:30,988   Created temporary directory: /tmp/pip-wheel-ptrs48c1
2021-02-11T12:08:30,989   Building wheel for adaptivepele (setup.py): started
2021-02-11T12:08:30,990   Destination directory: /tmp/pip-wheel-ptrs48c1
2021-02-11T12:08:30,991   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_xerw1no/adaptivepele_7afdfd2ad832475893bb12a0852c75c4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_xerw1no/adaptivepele_7afdfd2ad832475893bb12a0852c75c4/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ptrs48c1
2021-02-11T12:08:34,343   running bdist_wheel
2021-02-11T12:08:34,354   running build
2021-02-11T12:08:34,355   running build_py
2021-02-11T12:08:34,729   creating build
2021-02-11T12:08:34,730   creating build/lib.linux-armv7l-3.5
2021-02-11T12:08:34,731   creating build/lib.linux-armv7l-3.5/AdaptivePELE
2021-02-11T12:08:34,734   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-02-11T12:08:34,739   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-02-11T12:08:34,747   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-02-11T12:08:34,752   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-02-11T12:08:34,756   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-02-11T12:08:34,766   creating build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,768   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,776   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,781   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,785   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,791   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,796   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,802   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,808   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,815   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,820   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,825   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,830   copying AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,834   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,842   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,848   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,854   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,861   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,865   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:08:34,870   creating build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,872   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,876   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,882   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,891   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,900   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,906   copying AdaptivePELE/utilities/conda_deployment.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,911   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-02-11T12:08:34,919   creating build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,921   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,926   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,930   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,935   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,939   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,945   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,952   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,959   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,967   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,971   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-02-11T12:08:34,980   creating build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:34,982   copying AdaptivePELE/analysis/cluster.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:34,988   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:34,992   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:34,996   copying AdaptivePELE/analysis/simulationToCsv.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,000   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,005   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,011   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,017   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,024   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,029   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,036   copying AdaptivePELE/analysis/unbinding.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,040   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,045   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,052   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,058   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,064   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,070   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,075   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,081   copying AdaptivePELE/analysis/reportSimulation.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,087   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,095   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,102   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,109   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,116   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,122   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,129   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,135   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,141   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,147   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,152   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,159   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,165   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,171   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,178   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,183   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,188   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,192   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,197   copying AdaptivePELE/analysis/calculateDistances.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,202   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,207   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,213   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,220   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,225   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,231   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,235   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,239   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-02-11T12:08:35,245   creating build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-02-11T12:08:35,247   copying AdaptivePELE/constants/buildEnvironments.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-02-11T12:08:35,253   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-02-11T12:08:35,259   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-02-11T12:08:35,265   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-02-11T12:08:35,271   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-02-11T12:08:35,276   creating build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-02-11T12:08:35,278   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-02-11T12:08:35,284   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-02-11T12:08:35,296   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-02-11T12:08:35,301   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-02-11T12:08:35,305   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-02-11T12:08:35,313   creating build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2021-02-11T12:08:35,316   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2021-02-11T12:08:35,322   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2021-02-11T12:08:35,328   creating build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-02-11T12:08:35,330   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-02-11T12:08:35,336   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-02-11T12:08:35,341   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-02-11T12:08:35,345   creating build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-02-11T12:08:35,347   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-02-11T12:08:35,361   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-02-11T12:08:35,367   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-02-11T12:08:35,376   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-02-11T12:08:35,383   creating build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-02-11T12:08:35,386   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-02-11T12:08:35,392   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-02-11T12:08:35,397   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-02-11T12:08:35,412   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-02-11T12:08:35,419   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-02-11T12:08:35,452   running build_ext
2021-02-11T12:08:35,462   cythoning AdaptivePELE/atomset/atomset.pyx to AdaptivePELE/atomset/atomset.c
2021-02-11T12:08:37,076   /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-_xerw1no/adaptivepele_7afdfd2ad832475893bb12a0852c75c4/AdaptivePELE/atomset/atomset.pxd
2021-02-11T12:08:37,077     tree = Parsing.p_module(s, pxd, full_module_name)
2021-02-11T12:08:44,458   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2021-02-11T12:08:44,462   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2021-02-11T12:08:44,463   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2021-02-11T12:08:44,463   building 'AdaptivePELE.atomset.atomset' extension
2021-02-11T12:08:44,465   creating build/temp.linux-armv7l-3.5
2021-02-11T12:08:44,466   creating build/temp.linux-armv7l-3.5/AdaptivePELE
2021-02-11T12:08:44,468   creating build/temp.linux-armv7l-3.5/AdaptivePELE/atomset
2021-02-11T12:08:44,469   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o
2021-02-11T12:08:45,441   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-02-11T12:08:45,442                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-02-11T12:08:45,443                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-02-11T12:08:45,443                    from AdaptivePELE/atomset/atomset.c:610:
2021-02-11T12:08:45,444   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-02-11T12:08:45,445    #warning "Using deprecated NumPy API, disable it with " \
2021-02-11T12:08:45,446     ^~~~~~~
2021-02-11T12:09:47,421   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so
2021-02-11T12:09:47,894   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2021-02-11T12:09:47,896   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2021-02-11T12:09:48,529   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-02-11T12:09:48,530                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-02-11T12:09:48,530                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-02-11T12:09:48,531                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2021-02-11T12:09:48,532   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-02-11T12:09:48,532    #warning "Using deprecated NumPy API, disable it with " \
2021-02-11T12:09:48,533     ^~~~~~~
2021-02-11T12:10:13,196   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so
2021-02-11T12:10:13,501   building 'AdaptivePELE.atomset.RMSDCalculator' extension
2021-02-11T12:10:13,502   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o
2021-02-11T12:10:14,066   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-02-11T12:10:14,067                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-02-11T12:10:14,067                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-02-11T12:10:14,068                    from AdaptivePELE/atomset/RMSDCalculator.c:610:
2021-02-11T12:10:14,069   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-02-11T12:10:14,069    #warning "Using deprecated NumPy API, disable it with " \
2021-02-11T12:10:14,070     ^~~~~~~
2021-02-11T12:10:28,355   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so
2021-02-11T12:10:28,606   building 'AdaptivePELE.freeEnergies.utils' extension
2021-02-11T12:10:28,608   creating build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-02-11T12:10:28,644   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/freeEnergies -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o
2021-02-11T12:10:29,246   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-02-11T12:10:29,247                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-02-11T12:10:29,248                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-02-11T12:10:29,248                    from AdaptivePELE/freeEnergies/utils.c:610:
2021-02-11T12:10:29,249   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-02-11T12:10:29,249    #warning "Using deprecated NumPy API, disable it with " \
2021-02-11T12:10:29,250     ^~~~~~~
2021-02-11T12:10:58,807   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-9OXkbZ/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so
2021-02-11T12:10:59,138   installing to build/bdist.linux-armv7l/wheel
2021-02-11T12:10:59,139   running install
2021-02-11T12:10:59,142   running install_lib
2021-02-11T12:10:59,150   creating build/bdist.linux-armv7l
2021-02-11T12:10:59,151   creating build/bdist.linux-armv7l/wheel
2021-02-11T12:10:59,156   creating build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-02-11T12:10:59,160   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,162   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,167   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,172   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,176   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,181   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,188   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,196   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,271   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,275   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,280   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,285   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,291   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,297   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,303   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,311   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,315   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,321   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,327   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,333   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-02-11T12:10:59,340   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,342   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/generate_topology_object.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,348   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/synchronization.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,354   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/PDBLoader.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,361   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,371   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,377   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/conda_deployment.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,383   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-02-11T12:10:59,389   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,391   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testReporter.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,396   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,400   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,404   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,410   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,417   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,425   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,431   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,439   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD_CUDA.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,443   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-02-11T12:10:59,450   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,453   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,461   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,467   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/simple_postprocessing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,472   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/simulationToCsv.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,477   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,481   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,486   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/crossValidationClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,491   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/bestStructs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,499   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/filter_by_radius.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,505   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/interactivePlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,512   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/unbinding.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,517   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,522   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,527   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,533   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,539   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/convertTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,544   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analysis_utils.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,550   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,555   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/reportSimulation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,560   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/selectOnPlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,566   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/autoCorrelation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,571   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,579   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,586   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,592   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/calculateSASAvalues.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,597   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/count_clusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,602   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,607   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/extract_ligand_traj.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,611   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,617   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/standarize_MD_energies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,623   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,630   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,636   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,642   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,648   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,653   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,659   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/generateBox.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,665   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/calculateDistances.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,672   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/dehidratate_and_align.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,678   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,683   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,690   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,696   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/trajectory_processing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,702   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,708   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,713   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-02-11T12:10:59,721   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-02-11T12:10:59,724   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/buildEnvironments.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-02-11T12:10:59,730   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-02-11T12:10:59,736   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-02-11T12:10:59,742   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-02-11T12:10:59,748   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-02-11T12:10:59,755   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-02-11T12:10:59,758   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-02-11T12:10:59,765   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-02-11T12:10:59,777   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-02-11T12:10:59,783   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-02-11T12:10:59,787   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-02-11T12:10:59,795   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-02-11T12:10:59,797   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-02-11T12:10:59,940   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-02-11T12:10:59,975   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-02-11T12:11:00,034   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/setup.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-02-11T12:11:00,038   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-02-11T12:11:00,043   copying build/lib.linux-armv7l-3.5/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-02-11T12:11:00,050   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-02-11T12:11:00,052   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-02-11T12:11:00,060   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-02-11T12:11:00,066   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-02-11T12:11:00,071   copying build/lib.linux-armv7l-3.5/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-02-11T12:11:00,081   copying build/lib.linux-armv7l-3.5/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-02-11T12:11:00,087   copying build/lib.linux-armv7l-3.5/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-02-11T12:11:00,095   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-02-11T12:11:00,097   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-02-11T12:11:00,113   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-02-11T12:11:00,118   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/openmm_simulations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-02-11T12:11:00,128   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-02-11T12:11:00,134   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-02-11T12:11:00,137   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-02-11T12:11:00,143   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-02-11T12:11:00,148   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-02-11T12:11:00,164   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-02-11T12:11:00,170   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-02-11T12:11:00,175   copying build/lib.linux-armv7l-3.5/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-02-11T12:11:00,180   running install_egg_info
2021-02-11T12:11:00,241   running egg_info
2021-02-11T12:11:00,243   writing requirements to AdaptivePELE.egg-info/requires.txt
2021-02-11T12:11:00,247   writing top-level names to AdaptivePELE.egg-info/top_level.txt
2021-02-11T12:11:00,249   writing dependency_links to AdaptivePELE.egg-info/dependency_links.txt
2021-02-11T12:11:00,251   writing AdaptivePELE.egg-info/PKG-INFO
2021-02-11T12:11:00,340   reading manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-02-11T12:11:00,361   reading manifest template 'MANIFEST.in'
2021-02-11T12:11:00,496   writing manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-02-11T12:11:00,501   Copying AdaptivePELE.egg-info to build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7-py3.5.egg-info
2021-02-11T12:11:00,528   running install_scripts
2021-02-11T12:11:00,655   creating build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7.dist-info/WHEEL
2021-02-11T12:11:03,182   Building wheel for adaptivepele (setup.py): finished with status 'done'
2021-02-11T12:11:03,212   Created wheel for adaptivepele: filename=AdaptivePELE-1.7-cp35-cp35m-linux_armv7l.whl size=1416674 sha256=68bfb28f19f03bbd0d90143f2e191708ad9d2541088ece0035c08b89001d3f02
2021-02-11T12:11:03,213   Stored in directory: /tmp/pip-ephem-wheel-cache-6efw8rps/wheels/6a/f2/67/f04f9cc75d392152f69cae35ee034c353c4ca12dc128bf9e8e
2021-02-11T12:11:03,243 Successfully built adaptivepele
2021-02-11T12:11:03,605 Removed build tracker: '/tmp/pip-req-tracker-rxaqybw8'