2021-02-14T10:15:47,952 Created temporary directory: /tmp/pip-ephem-wheel-cache-g7ck4bli
2021-02-14T10:15:47,955 Created temporary directory: /tmp/pip-req-tracker-_hw9sc1j
2021-02-14T10:15:47,955 Initialized build tracking at /tmp/pip-req-tracker-_hw9sc1j
2021-02-14T10:15:47,955 Created build tracker: /tmp/pip-req-tracker-_hw9sc1j
2021-02-14T10:15:47,955 Entered build tracker: /tmp/pip-req-tracker-_hw9sc1j
2021-02-14T10:15:47,956 Created temporary directory: /tmp/pip-wheel-u2_lp7ur
2021-02-14T10:15:47,985 1 location(s) to search for versions of fragmenstein:
2021-02-14T10:15:47,985 * https://pypi.org/simple/fragmenstein/
2021-02-14T10:15:47,985 Fetching project page and analyzing links: https://pypi.org/simple/fragmenstein/
2021-02-14T10:15:47,985 Getting page https://pypi.org/simple/fragmenstein/
2021-02-14T10:15:47,987 Found index url https://pypi.org/simple
2021-02-14T10:15:48,074   Found link https://files.pythonhosted.org/packages/79/ea/7241107f42ce973a3d450ec740b88e5c481b09a368f56e472a79a051a272/Fragmenstein-0.6.tar.gz#sha256=8a298c932ea1b6b55131b92b1553b9659c3b7f63a77db39b88e81051980440b6 (from https://pypi.org/simple/fragmenstein/), version: 0.6
2021-02-14T10:15:48,074   Found link https://files.pythonhosted.org/packages/a5/40/314e6be38aa08837214d20180853d6f7b1216ce5600cc08b9d2af71fddd1/fragmenstein-0.6.1.tar.gz#sha256=e97aafbe0ea51d18115dcd4107984769da0663cc0a20b53443d7f7aaac9bd701 (from https://pypi.org/simple/fragmenstein/), version: 0.6.1
2021-02-14T10:15:48,074   Found link https://files.pythonhosted.org/packages/01/5a/80ee1256cd2c279c50e75ec982d56dcd4abe9f4ac8bb4c19c37299fe8792/fragmenstein-0.6.2.tar.gz#sha256=167e96cb1182bd30a948ff6b919d05bb7f9cc04325d5d2ce842d9660fed5fb30 (from https://pypi.org/simple/fragmenstein/), version: 0.6.2
2021-02-14T10:15:48,088 Given no hashes to check 1 links for project 'fragmenstein': discarding no candidates
2021-02-14T10:15:48,103 Collecting fragmenstein==0.6.2
2021-02-14T10:15:48,105   Created temporary directory: /tmp/pip-unpack-8_6xdu1j
2021-02-14T10:15:48,190   Downloading fragmenstein-0.6.2.tar.gz (7.2 kB)
2021-02-14T10:15:48,226   Added fragmenstein==0.6.2 from https://files.pythonhosted.org/packages/01/5a/80ee1256cd2c279c50e75ec982d56dcd4abe9f4ac8bb4c19c37299fe8792/fragmenstein-0.6.2.tar.gz#sha256=167e96cb1182bd30a948ff6b919d05bb7f9cc04325d5d2ce842d9660fed5fb30 to build tracker '/tmp/pip-req-tracker-_hw9sc1j'
2021-02-14T10:15:48,227     Running setup.py (path:/tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py) egg_info for package fragmenstein
2021-02-14T10:15:48,228     Created temporary directory: /tmp/pip-pip-egg-info-wv5lhz8b
2021-02-14T10:15:48,228     Running command python setup.py egg_info
2021-02-14T10:15:49,336     running egg_info
2021-02-14T10:15:49,339     creating /tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info
2021-02-14T10:15:49,340     writing /tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info/PKG-INFO
2021-02-14T10:15:49,342     writing dependency_links to /tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info/dependency_links.txt
2021-02-14T10:15:49,344     writing requirements to /tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info/requires.txt
2021-02-14T10:15:49,345     writing top-level names to /tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info/top_level.txt
2021-02-14T10:15:49,347     writing manifest file '/tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info/SOURCES.txt'
2021-02-14T10:15:49,492     reading manifest file '/tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info/SOURCES.txt'
2021-02-14T10:15:49,495     writing manifest file '/tmp/pip-pip-egg-info-wv5lhz8b/fragmenstein.egg-info/SOURCES.txt'
2021-02-14T10:15:49,496     /tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py:15: UserWarning: This 3.6+ script **requires** rdkit which cannot be pip installed. To install try either conda install -c conda-forge rdkit or sudo apt-get/brew install python3-rdkit or visit rdkit documentation.
2021-02-14T10:15:49,496       'conda install -c conda-forge rdkit or ' +
2021-02-14T10:15:49,497     /tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py:19: UserWarning: The minimisation part of this code uses pyrosetta, which has to be downloaded from the Rosetta software site due to licencing. Without it only the classes Monster and Rectifier will work
2021-02-14T10:15:49,497       warn('The minimisation part of this code uses pyrosetta, which has to be downloaded from ' +
2021-02-14T10:15:49,497     /tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py:23: UserWarning: The module pymol2 is optionally required (conda or apt-get installable).
2021-02-14T10:15:49,498       warn('The module pymol2 is optionally required (conda or apt-get installable).')
2021-02-14T10:15:49,555   Source in /tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589 has version 0.6.2, which satisfies requirement fragmenstein==0.6.2 from https://files.pythonhosted.org/packages/01/5a/80ee1256cd2c279c50e75ec982d56dcd4abe9f4ac8bb4c19c37299fe8792/fragmenstein-0.6.2.tar.gz#sha256=167e96cb1182bd30a948ff6b919d05bb7f9cc04325d5d2ce842d9660fed5fb30
2021-02-14T10:15:49,556   Removed fragmenstein==0.6.2 from https://files.pythonhosted.org/packages/01/5a/80ee1256cd2c279c50e75ec982d56dcd4abe9f4ac8bb4c19c37299fe8792/fragmenstein-0.6.2.tar.gz#sha256=167e96cb1182bd30a948ff6b919d05bb7f9cc04325d5d2ce842d9660fed5fb30 from build tracker '/tmp/pip-req-tracker-_hw9sc1j'
2021-02-14T10:15:49,560 Created temporary directory: /tmp/pip-unpack-xe7w0vj9
2021-02-14T10:15:49,561 Building wheels for collected packages: fragmenstein
2021-02-14T10:15:49,566   Created temporary directory: /tmp/pip-wheel-95jae1b_
2021-02-14T10:15:49,566   Building wheel for fragmenstein (setup.py): started
2021-02-14T10:15:49,567   Destination directory: /tmp/pip-wheel-95jae1b_
2021-02-14T10:15:49,567   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-95jae1b_
2021-02-14T10:15:50,372   /tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py:15: UserWarning: This 3.6+ script **requires** rdkit which cannot be pip installed. To install try either conda install -c conda-forge rdkit or sudo apt-get/brew install python3-rdkit or visit rdkit documentation.
2021-02-14T10:15:50,372     'conda install -c conda-forge rdkit or ' +
2021-02-14T10:15:50,373   /tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py:19: UserWarning: The minimisation part of this code uses pyrosetta, which has to be downloaded from the Rosetta software site due to licencing. Without it only the classes Monster and Rectifier will work
2021-02-14T10:15:50,373     warn('The minimisation part of this code uses pyrosetta, which has to be downloaded from ' +
2021-02-14T10:15:50,373   /tmp/pip-wheel-u2_lp7ur/fragmenstein_77c1f815391c4256865efc0e2ab6c589/setup.py:23: UserWarning: The module pymol2 is optionally required (conda or apt-get installable).
2021-02-14T10:15:50,374     warn('The module pymol2 is optionally required (conda or apt-get installable).')
2021-02-14T10:15:50,532   running bdist_wheel
2021-02-14T10:15:50,539   running build
2021-02-14T10:15:50,539   running build_py
2021-02-14T10:15:50,677   creating build
2021-02-14T10:15:50,677   creating build/lib
2021-02-14T10:15:50,678   creating build/lib/fragmenstein
2021-02-14T10:15:50,679   copying fragmenstein/m_rmsd.py -> build/lib/fragmenstein
2021-02-14T10:15:50,682   copying fragmenstein/__init__.py -> build/lib/fragmenstein
2021-02-14T10:15:50,690   installing to build/bdist.linux-armv7l/wheel
2021-02-14T10:15:50,690   running install
2021-02-14T10:15:50,692   running install_lib
2021-02-14T10:15:50,697   creating build/bdist.linux-armv7l
2021-02-14T10:15:50,697   creating build/bdist.linux-armv7l/wheel
2021-02-14T10:15:50,700   creating build/bdist.linux-armv7l/wheel/fragmenstein
2021-02-14T10:15:50,701   copying build/lib/fragmenstein/m_rmsd.py -> build/bdist.linux-armv7l/wheel/fragmenstein
2021-02-14T10:15:50,704   copying build/lib/fragmenstein/__init__.py -> build/bdist.linux-armv7l/wheel/fragmenstein
2021-02-14T10:15:50,706   running install_egg_info
2021-02-14T10:15:50,727   running egg_info
2021-02-14T10:15:50,728   creating fragmenstein.egg-info
2021-02-14T10:15:50,728   writing fragmenstein.egg-info/PKG-INFO
2021-02-14T10:15:50,731   writing dependency_links to fragmenstein.egg-info/dependency_links.txt
2021-02-14T10:15:50,733   writing requirements to fragmenstein.egg-info/requires.txt
2021-02-14T10:15:50,734   writing top-level names to fragmenstein.egg-info/top_level.txt
2021-02-14T10:15:50,736   writing manifest file 'fragmenstein.egg-info/SOURCES.txt'
2021-02-14T10:15:50,739   reading manifest file 'fragmenstein.egg-info/SOURCES.txt'
2021-02-14T10:15:50,744   writing manifest file 'fragmenstein.egg-info/SOURCES.txt'
2021-02-14T10:15:50,745   Copying fragmenstein.egg-info to build/bdist.linux-armv7l/wheel/fragmenstein-0.6.2-py3.7.egg-info
2021-02-14T10:15:50,758   running install_scripts
2021-02-14T10:15:50,844   creating build/bdist.linux-armv7l/wheel/fragmenstein-0.6.2.dist-info/WHEEL
2021-02-14T10:15:50,846   creating '/tmp/pip-wheel-95jae1b_/fragmenstein-0.6.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-02-14T10:15:50,850   adding 'fragmenstein/__init__.py'
2021-02-14T10:15:50,852   adding 'fragmenstein/m_rmsd.py'
2021-02-14T10:15:50,854   adding 'fragmenstein-0.6.2.dist-info/METADATA'
2021-02-14T10:15:50,855   adding 'fragmenstein-0.6.2.dist-info/WHEEL'
2021-02-14T10:15:50,856   adding 'fragmenstein-0.6.2.dist-info/top_level.txt'
2021-02-14T10:15:50,857   adding 'fragmenstein-0.6.2.dist-info/RECORD'
2021-02-14T10:15:50,858   removing build/bdist.linux-armv7l/wheel
2021-02-14T10:15:50,928   Building wheel for fragmenstein (setup.py): finished with status 'done'
2021-02-14T10:15:50,931   Created wheel for fragmenstein: filename=fragmenstein-0.6.2-py3-none-any.whl size=5303 sha256=06157e7aa034419ec24c936b586fee8801b66cd32017233c170a9e67aee89f93
2021-02-14T10:15:50,931   Stored in directory: /tmp/pip-ephem-wheel-cache-g7ck4bli/wheels/3c/e2/cc/9f2c05158536e19cdf715ce96ec97e9ce97c2c4735bbdc1902
2021-02-14T10:15:50,940 Successfully built fragmenstein
2021-02-14T10:15:50,943 Removed build tracker: '/tmp/pip-req-tracker-_hw9sc1j'