2021-02-17T17:47:11,787 Created temporary directory: /tmp/pip-ephem-wheel-cache-o8l3z9iy 2021-02-17T17:47:11,790 Created temporary directory: /tmp/pip-req-tracker-r1ohja3a 2021-02-17T17:47:11,790 Initialized build tracking at /tmp/pip-req-tracker-r1ohja3a 2021-02-17T17:47:11,790 Created build tracker: /tmp/pip-req-tracker-r1ohja3a 2021-02-17T17:47:11,791 Entered build tracker: /tmp/pip-req-tracker-r1ohja3a 2021-02-17T17:47:11,791 Created temporary directory: /tmp/pip-wheel-ueh0ecfi 2021-02-17T17:47:11,829 1 location(s) to search for versions of pomoxis: 2021-02-17T17:47:11,829 * https://pypi.org/simple/pomoxis/ 2021-02-17T17:47:11,829 Fetching project page and analyzing links: https://pypi.org/simple/pomoxis/ 2021-02-17T17:47:11,830 Getting page https://pypi.org/simple/pomoxis/ 2021-02-17T17:47:11,831 Found index url https://pypi.org/simple 2021-02-17T17:47:11,936 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/c0/59/a56134534e8982b057c383eb347cf395305c28c3fcd47e42ca3866401212/pomoxis-0.2.2a1.tar.gz#sha256=62f5121020ce00f056714240d50d580d0c23a64d502a80ea529d431655367e88 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,937 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/7f/90/ed673752a756a3477dcc242f938c46aa7fabd7e9a061438a8606c3a99e6e/pomoxis-0.2.2a2.tar.gz#sha256=cfed0307424929a9bb1e44f6acd2e1d8b5741532581ae38ce510d565979247c6 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,938 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/45/15/4b49595826cc4975e73952c5416a72c994477a5e7b099976577d88f105df/pomoxis-0.2.2.tar.gz#sha256=4001024e7c2b200e4924c2924f3c423e3f7464b51501619b3c310f51b5120df9 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,939 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/79/63/59892ab3f851f6088ba6c5f97fc1e871cbf6ce6e310b8da1e54d4d1427c1/pomoxis-0.2.3.tar.gz#sha256=e87e632ca3ef172590e059ddb7282d933294439ef71c3df67d9b56a969a45b8d (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,939 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/fa/d1/392448c751e2c024e51075f04d81067530d326e33a36dd6726f617bb3b4d/pomoxis-0.2.4.tar.gz#sha256=2f4a45d1bc48725a24ede76b07cd66bb9432e0b382685f4ea0abc4715eb96fc2 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,940 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/2d/53/aac67c49cd9c3e371dfe4ae88674d68271e8d5eb3d53111edb4c44efa4d0/pomoxis-0.2.5.tar.gz#sha256=014894e06e107701593d2d470785f9ac940a6907a456cae1b2e65447f0bcf2e9 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,941 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/c1/4b/6b3e8a6407ddacfc1d8e4f22482eb2edf3ab34fe830a83bf2d4003302499/pomoxis-0.3.0a1.tar.gz#sha256=d19daeeff38498c5b270c49a3796c459b3506e0188a79b80de6a5fde914db7fd (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,942 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/34/ec/2b29e6232c6b4ba278071f99ee5e6804d6a751887cd4e0302f12692ac4c4/pomoxis-0.3.0.tar.gz#sha256=945ed681b1bfc6e22c0c217b6c7854762408718ee5bd29732ce1aa2b8fb873a2 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,943 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/da/76/32271d7ddec228f6d9b1ed618fc602f51a26d20e3bea7c06ae9bae74f6a0/pomoxis-0.3.1.tar.gz#sha256=08cec3223b638480187605bb0a3a46e9c09fc401a050e292156c4e56b839564a (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,944 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/81/7c/6fa149a088ec5cdca9133e3cf6a3f36138ad98361cc993f64c7148a98ae7/pomoxis-0.3.2.tar.gz#sha256=9fda874f5b242881c75cb5eabe4a2580a09f7d278e21be4cf08c3658e3048ea3 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,945 Link requires a different Python (3.7.3 not in: '>=3.5.2, <3.7'): https://files.pythonhosted.org/packages/68/66/c63fc68165d3c8fe1dc68bd49570bb5a169c6deb6a65e551809b65dbece4/pomoxis-0.3.4.tar.gz#sha256=f05a7b0d9080b5ac4f573fcef6431f60823c6c04c09f1b9bb7569049abec23c1 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7) 2021-02-17T17:47:11,946 Found link https://files.pythonhosted.org/packages/79/95/7b52ac88f7f0e96966844fb8900a653f85580a0a9067f21ee5d851904277/pomoxis-0.3.5.tar.gz#sha256=77013a1d23a166289fc156c67d4927c14ace97d477bddee621a9c75ccae51344 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.5 2021-02-17T17:47:11,947 Found link https://files.pythonhosted.org/packages/ee/c0/4c6ec6dc89d36bc1ae220c5c61040b42e22a02c73bd1b15b893d2be32711/pomoxis-0.3.6.tar.gz#sha256=9f90f2cad4b9c0c74a2e99e166c5734dc7177b84abcf9f48965683959b20ec2b (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.6), version: 0.3.6 2021-02-17T17:47:11,961 Given no hashes to check 1 links for project 'pomoxis': discarding no candidates 2021-02-17T17:47:11,976 Collecting pomoxis==0.3.6 2021-02-17T17:47:11,978 Created temporary directory: /tmp/pip-unpack-_8h4udrj 2021-02-17T17:47:12,156 Downloading pomoxis-0.3.6.tar.gz (91 kB) 2021-02-17T17:47:12,280 Added pomoxis==0.3.6 from https://files.pythonhosted.org/packages/ee/c0/4c6ec6dc89d36bc1ae220c5c61040b42e22a02c73bd1b15b893d2be32711/pomoxis-0.3.6.tar.gz#sha256=9f90f2cad4b9c0c74a2e99e166c5734dc7177b84abcf9f48965683959b20ec2b to build tracker '/tmp/pip-req-tracker-r1ohja3a' 2021-02-17T17:47:12,281 Running setup.py (path:/tmp/pip-wheel-ueh0ecfi/pomoxis_47a0cc12d2d1430caf6d386076e894c1/setup.py) egg_info for package pomoxis 2021-02-17T17:47:12,282 Created temporary directory: /tmp/pip-pip-egg-info-k61oyvih 2021-02-17T17:47:12,282 Running command python setup.py egg_info 2021-02-17T17:47:13,308 running egg_info 2021-02-17T17:47:13,310 creating /tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info 2021-02-17T17:47:13,311 writing /tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/PKG-INFO 2021-02-17T17:47:13,314 writing dependency_links to /tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/dependency_links.txt 2021-02-17T17:47:13,317 writing entry points to /tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/entry_points.txt 2021-02-17T17:47:13,319 writing requirements to /tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/requires.txt 2021-02-17T17:47:13,320 writing top-level names to /tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/top_level.txt 2021-02-17T17:47:13,322 writing manifest file '/tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/SOURCES.txt' 2021-02-17T17:47:13,479 reading manifest file '/tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/SOURCES.txt' 2021-02-17T17:47:13,480 reading manifest template 'MANIFEST.in' 2021-02-17T17:47:13,483 no previously-included directories found matching 'build' 2021-02-17T17:47:13,483 no previously-included directories found matching 'docs' 2021-02-17T17:47:13,486 writing manifest file '/tmp/pip-pip-egg-info-k61oyvih/pomoxis.egg-info/SOURCES.txt' 2021-02-17T17:47:13,550 Source in /tmp/pip-wheel-ueh0ecfi/pomoxis_47a0cc12d2d1430caf6d386076e894c1 has version 0.3.6, which satisfies requirement pomoxis==0.3.6 from https://files.pythonhosted.org/packages/ee/c0/4c6ec6dc89d36bc1ae220c5c61040b42e22a02c73bd1b15b893d2be32711/pomoxis-0.3.6.tar.gz#sha256=9f90f2cad4b9c0c74a2e99e166c5734dc7177b84abcf9f48965683959b20ec2b 2021-02-17T17:47:13,551 Removed pomoxis==0.3.6 from https://files.pythonhosted.org/packages/ee/c0/4c6ec6dc89d36bc1ae220c5c61040b42e22a02c73bd1b15b893d2be32711/pomoxis-0.3.6.tar.gz#sha256=9f90f2cad4b9c0c74a2e99e166c5734dc7177b84abcf9f48965683959b20ec2b from build tracker '/tmp/pip-req-tracker-r1ohja3a' 2021-02-17T17:47:13,559 Created temporary directory: /tmp/pip-unpack-qz3hawsf 2021-02-17T17:47:13,560 Building wheels for collected packages: pomoxis 2021-02-17T17:47:13,566 Created temporary directory: /tmp/pip-wheel-mp_uzhjn 2021-02-17T17:47:13,566 Building wheel for pomoxis (setup.py): started 2021-02-17T17:47:13,567 Destination directory: /tmp/pip-wheel-mp_uzhjn 2021-02-17T17:47:13,567 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ueh0ecfi/pomoxis_47a0cc12d2d1430caf6d386076e894c1/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ueh0ecfi/pomoxis_47a0cc12d2d1430caf6d386076e894c1/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-mp_uzhjn 2021-02-17T17:47:14,551 running bdist_wheel 2021-02-17T17:47:14,556 running build 2021-02-17T17:47:14,556 running build_py 2021-02-17T17:47:14,690 creating build 2021-02-17T17:47:14,690 creating build/lib 2021-02-17T17:47:14,691 creating build/lib/pomoxis 2021-02-17T17:47:14,692 copying pomoxis/ref_seqs_from_bam.py -> build/lib/pomoxis 2021-02-17T17:47:14,695 copying pomoxis/__init__.py -> build/lib/pomoxis 2021-02-17T17:47:14,696 copying pomoxis/trim_alignments.py -> build/lib/pomoxis 2021-02-17T17:47:14,699 copying pomoxis/summary_from_stats.py -> build/lib/pomoxis 2021-02-17T17:47:14,700 copying pomoxis/stats_from_bam.py -> build/lib/pomoxis 2021-02-17T17:47:14,703 copying pomoxis/bio.py -> build/lib/pomoxis 2021-02-17T17:47:14,705 copying pomoxis/coverage_from_bam.py -> build/lib/pomoxis 2021-02-17T17:47:14,707 copying pomoxis/qscores_from_summary.py -> build/lib/pomoxis 2021-02-17T17:47:14,710 copying pomoxis/assess_homopolymers.py -> build/lib/pomoxis 2021-02-17T17:47:14,713 copying pomoxis/subsample_bam.py -> build/lib/pomoxis 2021-02-17T17:47:14,715 copying pomoxis/common_errors_from_bam.py -> build/lib/pomoxis 2021-02-17T17:47:14,718 copying pomoxis/catalogue_errors.py -> build/lib/pomoxis 2021-02-17T17:47:14,722 copying pomoxis/util.py -> build/lib/pomoxis 2021-02-17T17:47:14,725 copying pomoxis/find_indels.py -> build/lib/pomoxis 2021-02-17T17:47:14,729 running build_scripts 2021-02-17T17:47:14,730 creating build/scripts-3.7 2021-02-17T17:47:14,731 copying scripts/assess_assembly -> build/scripts-3.7 2021-02-17T17:47:14,735 copying scripts/intersect_assembly_errors -> build/scripts-3.7 2021-02-17T17:47:14,739 copying scripts/mini_align -> build/scripts-3.7 2021-02-17T17:47:14,742 copying scripts/mini_assemble -> build/scripts-3.7 2021-02-17T17:47:14,746 installing to build/bdist.linux-armv7l/wheel 2021-02-17T17:47:14,746 running install 2021-02-17T17:47:14,747 running install_lib 2021-02-17T17:47:14,752 creating build/bdist.linux-armv7l 2021-02-17T17:47:14,752 creating build/bdist.linux-armv7l/wheel 2021-02-17T17:47:14,755 creating build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,756 copying build/lib/pomoxis/ref_seqs_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,759 copying build/lib/pomoxis/__init__.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,761 copying build/lib/pomoxis/trim_alignments.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,764 copying build/lib/pomoxis/summary_from_stats.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,767 copying build/lib/pomoxis/stats_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,769 copying build/lib/pomoxis/bio.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,772 copying build/lib/pomoxis/coverage_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,774 copying build/lib/pomoxis/qscores_from_summary.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,776 copying build/lib/pomoxis/assess_homopolymers.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,779 copying build/lib/pomoxis/subsample_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,782 copying build/lib/pomoxis/common_errors_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,784 copying build/lib/pomoxis/catalogue_errors.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,788 copying build/lib/pomoxis/util.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,791 copying build/lib/pomoxis/find_indels.py -> build/bdist.linux-armv7l/wheel/pomoxis 2021-02-17T17:47:14,794 running install_egg_info 2021-02-17T17:47:14,818 running egg_info 2021-02-17T17:47:14,818 writing pomoxis.egg-info/PKG-INFO 2021-02-17T17:47:14,821 writing dependency_links to pomoxis.egg-info/dependency_links.txt 2021-02-17T17:47:14,823 writing entry points to pomoxis.egg-info/entry_points.txt 2021-02-17T17:47:14,825 writing requirements to pomoxis.egg-info/requires.txt 2021-02-17T17:47:14,826 writing top-level names to pomoxis.egg-info/top_level.txt 2021-02-17T17:47:14,831 reading manifest file 'pomoxis.egg-info/SOURCES.txt' 2021-02-17T17:47:14,834 reading manifest template 'MANIFEST.in' 2021-02-17T17:47:14,836 no previously-included directories found matching 'build' 2021-02-17T17:47:14,837 no previously-included directories found matching 'docs' 2021-02-17T17:47:14,840 writing manifest file 'pomoxis.egg-info/SOURCES.txt' 2021-02-17T17:47:14,841 Copying pomoxis.egg-info to build/bdist.linux-armv7l/wheel/pomoxis-0.3.6-py3.7.egg-info 2021-02-17T17:47:14,859 running install_scripts 2021-02-17T17:47:14,921 creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data 2021-02-17T17:47:14,921 creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts 2021-02-17T17:47:14,923 copying build/scripts-3.7/intersect_assembly_errors -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts 2021-02-17T17:47:14,925 copying build/scripts-3.7/mini_assemble -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts 2021-02-17T17:47:14,928 copying build/scripts-3.7/mini_align -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts 2021-02-17T17:47:14,930 copying build/scripts-3.7/assess_assembly -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts 2021-02-17T17:47:14,933 changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts/intersect_assembly_errors to 755 2021-02-17T17:47:14,933 changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts/mini_assemble to 755 2021-02-17T17:47:14,933 changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts/mini_align to 755 2021-02-17T17:47:14,934 changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.data/scripts/assess_assembly to 755 2021-02-17T17:47:14,969 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2021-02-17T17:47:14,977 creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.6.dist-info/WHEEL 2021-02-17T17:47:14,980 creating '/tmp/pip-wheel-mp_uzhjn/pomoxis-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-02-17T17:47:14,983 adding 'pomoxis/__init__.py' 2021-02-17T17:47:14,986 adding 'pomoxis/assess_homopolymers.py' 2021-02-17T17:47:14,988 adding 'pomoxis/bio.py' 2021-02-17T17:47:14,995 adding 'pomoxis/catalogue_errors.py' 2021-02-17T17:47:14,997 adding 'pomoxis/common_errors_from_bam.py' 2021-02-17T17:47:14,999 adding 'pomoxis/coverage_from_bam.py' 2021-02-17T17:47:15,001 adding 'pomoxis/find_indels.py' 2021-02-17T17:47:15,002 adding 'pomoxis/qscores_from_summary.py' 2021-02-17T17:47:15,004 adding 'pomoxis/ref_seqs_from_bam.py' 2021-02-17T17:47:15,006 adding 'pomoxis/stats_from_bam.py' 2021-02-17T17:47:15,008 adding 'pomoxis/subsample_bam.py' 2021-02-17T17:47:15,010 adding 'pomoxis/summary_from_stats.py' 2021-02-17T17:47:15,011 adding 'pomoxis/trim_alignments.py' 2021-02-17T17:47:15,014 adding 'pomoxis/util.py' 2021-02-17T17:47:15,017 adding 'pomoxis-0.3.6.data/scripts/assess_assembly' 2021-02-17T17:47:15,019 adding 'pomoxis-0.3.6.data/scripts/intersect_assembly_errors' 2021-02-17T17:47:15,020 adding 'pomoxis-0.3.6.data/scripts/mini_align' 2021-02-17T17:47:15,022 adding 'pomoxis-0.3.6.data/scripts/mini_assemble' 2021-02-17T17:47:15,026 adding 'pomoxis-0.3.6.dist-info/LICENSE.md' 2021-02-17T17:47:15,028 adding 'pomoxis-0.3.6.dist-info/METADATA' 2021-02-17T17:47:15,029 adding 'pomoxis-0.3.6.dist-info/WHEEL' 2021-02-17T17:47:15,030 adding 'pomoxis-0.3.6.dist-info/entry_points.txt' 2021-02-17T17:47:15,031 adding 'pomoxis-0.3.6.dist-info/top_level.txt' 2021-02-17T17:47:15,032 adding 'pomoxis-0.3.6.dist-info/RECORD' 2021-02-17T17:47:15,034 removing build/bdist.linux-armv7l/wheel 2021-02-17T17:47:15,112 Building wheel for pomoxis (setup.py): finished with status 'done' 2021-02-17T17:47:15,115 Created wheel for pomoxis: filename=pomoxis-0.3.6-py3-none-any.whl size=56634 sha256=d47bc4ed9f5536f6a4bba5d5dc4e43f3d6e6fcd32269903ab3e77115932eb3af 2021-02-17T17:47:15,115 Stored in directory: /tmp/pip-ephem-wheel-cache-o8l3z9iy/wheels/f9/86/88/53dc4a61987353ca7a0f04cdc3dd9899e9028412c30845ed7a 2021-02-17T17:47:15,126 Successfully built pomoxis 2021-02-17T17:47:15,132 Removed build tracker: '/tmp/pip-req-tracker-r1ohja3a'