2021-03-02T08:33:16,973 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-02T08:33:17,651 Created temporary directory: /tmp/pip-ephem-wheel-cache-arg3_24u
2021-03-02T08:33:17,656 Created temporary directory: /tmp/pip-req-tracker-qe9w1ngo
2021-03-02T08:33:17,657 Initialized build tracking at /tmp/pip-req-tracker-qe9w1ngo
2021-03-02T08:33:17,657 Created build tracker: /tmp/pip-req-tracker-qe9w1ngo
2021-03-02T08:33:17,658 Entered build tracker: /tmp/pip-req-tracker-qe9w1ngo
2021-03-02T08:33:17,659 Created temporary directory: /tmp/pip-wheel-70xsj8jy
2021-03-02T08:33:17,723 1 location(s) to search for versions of dark-matter:
2021-03-02T08:33:17,723 * https://pypi.org/simple/dark-matter/
2021-03-02T08:33:17,724 Fetching project page and analyzing links: https://pypi.org/simple/dark-matter/
2021-03-02T08:33:17,726 Getting page https://pypi.org/simple/dark-matter/
2021-03-02T08:33:17,730 Found index url https://pypi.org/simple
2021-03-02T08:33:18,421   Found link https://files.pythonhosted.org/packages/7a/5d/5704534d2e83673ec3c8534b39fe1a3f071291761d421803f6b2f04ca6b3/dark-matter-1.0.0.tar.gz#sha256=e915679610d0e94ca32b047d9ef8db6bb16aca43edbba1f7ea13d8f9a00b77d7 (from https://pypi.org/simple/dark-matter/), version: 1.0.0
2021-03-02T08:33:18,422   Found link https://files.pythonhosted.org/packages/4a/50/cc5fbbe75b550d6819af04e15ffc633d99b636f2e2d3c22ca4fc09ba2380/dark-matter-1.0.11.tar.gz#sha256=4157ac389269821b5c3a2de3b32922bf437df79e858f2ae8c7293479d393c90b (from https://pypi.org/simple/dark-matter/), version: 1.0.11
2021-03-02T08:33:18,423   Found link https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 (from https://pypi.org/simple/dark-matter/), version: 1.0.12
2021-03-02T08:33:18,424   Found link https://files.pythonhosted.org/packages/42/69/f0d13d1e43ec50d1ca85b70c27cc5333f85186668700544a7661c4d6d374/dark-matter-1.0.13.tar.gz#sha256=4b061448407711cab985c60762244028d74b32a322d7329a63138e4080d110d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.13
2021-03-02T08:33:18,425   Found link https://files.pythonhosted.org/packages/30/5a/9c56b0639b13c2c78cad8ac304e9c5d834eed0cab07d0dcd780b7be47249/dark-matter-1.0.16.tar.gz#sha256=c0c11585b9a71c47aa248794779111a9ab30c48e32e17540f95347d98ce116a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.16
2021-03-02T08:33:18,426   Found link https://files.pythonhosted.org/packages/26/8d/eb629def26e051253c4070e70dfc7c8258d513b2685fe4e92bb975b6e613/dark-matter-1.0.19.tar.gz#sha256=4944ba9c898e0b956b6a8c0b8e78e5aa91579ac469885c61e70d71e89f92883d (from https://pypi.org/simple/dark-matter/), version: 1.0.19
2021-03-02T08:33:18,427   Found link https://files.pythonhosted.org/packages/6d/6f/755f4b72e91ce15571d5884761d34627eba8dc173005bc8d41a2e4d2ec81/dark-matter-1.0.27.tar.gz#sha256=70b765fdc0932137cb1ee2b9183018261c218fd27c87a3f3ab5fabb93a9d0e3c (from https://pypi.org/simple/dark-matter/), version: 1.0.27
2021-03-02T08:33:18,428   Found link https://files.pythonhosted.org/packages/c1/41/a8cb27f9a68dd388473a594c0a5cb162fb1518d16197c357ec3617e9631c/dark-matter-1.0.32.tar.gz#sha256=405b6a4a51ac4c1660435c882fb548d1e6ad1a889779b3893bddf5f876732eef (from https://pypi.org/simple/dark-matter/), version: 1.0.32
2021-03-02T08:33:18,429   Found link https://files.pythonhosted.org/packages/26/f5/ea2b1d090cd00bb769d4e07cc4b697373c58dac65a52cf442a4f60a833ba/dark-matter-1.0.34.tar.gz#sha256=8fe1d83a0b0476164c5a4ca8197890e1936ed0d66a689870a71676a14f671539 (from https://pypi.org/simple/dark-matter/), version: 1.0.34
2021-03-02T08:33:18,430   Found link https://files.pythonhosted.org/packages/1d/a3/954c4ab15080556dbb33a1c2053ce9028b51cb160099978332b9252b5f93/dark-matter-1.0.36.tar.gz#sha256=9f639deedd5d4e4da0276c9a6780288c5d78e95b0c5b69d08b312ed10cc10d25 (from https://pypi.org/simple/dark-matter/), version: 1.0.36
2021-03-02T08:33:18,431   Found link https://files.pythonhosted.org/packages/fd/f7/352dcf1f8fb13001175a73acb52fff4bc20760300f87459d7e1e967823a1/dark-matter-1.0.38.tar.gz#sha256=b506f4177d9334da17c7fdd2054944851b96c3872be6d00cd5ece2de2ddc7d82 (from https://pypi.org/simple/dark-matter/), version: 1.0.38
2021-03-02T08:33:18,432   Found link https://files.pythonhosted.org/packages/17/94/5d0c424a52cc3d16793cef2a6b38a8a3542c4bda072c49d61efd18a1ec60/dark-matter-1.0.40.tar.gz#sha256=6e38036fc94ef7817c18d607b937b916ef1caafe40fe072d4748306b2e646a1f (from https://pypi.org/simple/dark-matter/), version: 1.0.40
2021-03-02T08:33:18,433   Found link https://files.pythonhosted.org/packages/4c/d7/9fa11fcb1f9923e3e980f1b493791ca3fbe6920a68a939971fb1eb333d05/dark-matter-1.0.41.tar.gz#sha256=e6e0364aa69a1fef4621e7d016839a3dffbcddff5d575ba4ee7f4af5cebd754d (from https://pypi.org/simple/dark-matter/), version: 1.0.41
2021-03-02T08:33:18,434   Found link https://files.pythonhosted.org/packages/1b/bb/9a2bffcc74c3bb8c2f45106443174a74dbe3424e45eb483ba7bf72da1fe2/dark-matter-1.0.42.tar.gz#sha256=2540312ed60fed3f5a52b5ec60409e712c8a562569baa132be6ab0c53edbec83 (from https://pypi.org/simple/dark-matter/), version: 1.0.42
2021-03-02T08:33:18,435   Found link https://files.pythonhosted.org/packages/e2/dd/cb0a17ce78d39d3b6d6dc93f54c49069b722569042312f7044143a67af30/dark-matter-1.0.43.tar.gz#sha256=17548e06b695864df72afb4e6664261333612b991373745f4e68f99ed48ace5f (from https://pypi.org/simple/dark-matter/), version: 1.0.43
2021-03-02T08:33:18,435   Found link https://files.pythonhosted.org/packages/88/ee/c6e7d4142ee1baca46ff0d7f295b7d5a4059648c815de4223f873f17a448/dark-matter-1.0.44.tar.gz#sha256=468d2be2ad00ddcdfafe52f09a6a8971b40964e816fdb95de2772d32879d3fc5 (from https://pypi.org/simple/dark-matter/), version: 1.0.44
2021-03-02T08:33:18,436   Found link https://files.pythonhosted.org/packages/7e/71/19001567a982f1ea235095e6f2042990e0666c343bfd985b2c2b8a6a6edc/dark-matter-1.0.45.tar.gz#sha256=b60e397a82b3183fae2cdee32ac92f43f4533bcb5a7683d5fc3e58dd6ceee4fd (from https://pypi.org/simple/dark-matter/), version: 1.0.45
2021-03-02T08:33:18,437   Found link https://files.pythonhosted.org/packages/9b/71/0395a4c77fc9443e4b1c8d6d3787d527c2d06ecf56c75db9779bb602d594/dark-matter-1.0.46.tar.gz#sha256=66aaa9872db60c407b047f5e997c8155fe0626df9222b251a6f65b15ca4d3423 (from https://pypi.org/simple/dark-matter/), version: 1.0.46
2021-03-02T08:33:18,438   Found link https://files.pythonhosted.org/packages/85/3b/b68351e5280d2f65b26ca3e225a5a0385d921a6d25cef62563eeaec42343/dark-matter-1.0.47.tar.gz#sha256=b51c372b06fe94fcc93f8795aa5d2b2a547108934cc5c429e89972cdea153baf (from https://pypi.org/simple/dark-matter/), version: 1.0.47
2021-03-02T08:33:18,439   Found link https://files.pythonhosted.org/packages/fb/4c/6e27c41b817fc86240a956472978b226008da91e8c2b2b5dd991091c3a2d/dark-matter-1.0.48.tar.gz#sha256=e9ca7aad5b5631658d2ab154108568faa6196f7cea8dfaef1881d0013a3c59bd (from https://pypi.org/simple/dark-matter/), version: 1.0.48
2021-03-02T08:33:18,440   Found link https://files.pythonhosted.org/packages/07/65/1253b1fcd6c75fbbc19eee09982ec62023742959583d6687c666befffb71/dark-matter-1.0.49.tar.gz#sha256=7fe2af86f08e9e2416869c8fa571fc79b5a6965d4e2e9624536984a6ede94d5e (from https://pypi.org/simple/dark-matter/), version: 1.0.49
2021-03-02T08:33:18,441   Found link https://files.pythonhosted.org/packages/ac/93/e94fa7a2455aa54ebc294bb5bd93c11aca3c461073aee1fab28b4ee380ae/dark-matter-1.0.50.tar.gz#sha256=cd9ce5690ff46e8a27b17505dc500d0dc065bb403d6aa731615fbcfa0e9ecb50 (from https://pypi.org/simple/dark-matter/), version: 1.0.50
2021-03-02T08:33:18,442   Found link https://files.pythonhosted.org/packages/b9/ce/7d74daae572ebb32ffdbd439440361f5bf39eb9f9d0f55654878cbd7cbb2/dark-matter-1.0.51.tar.gz#sha256=ca7762302eb529ec15dbc0bba35397dc018cb3b43b371b02495ba1caa8fc6fe2 (from https://pypi.org/simple/dark-matter/), version: 1.0.51
2021-03-02T08:33:18,443   Found link https://files.pythonhosted.org/packages/cd/fb/8ff473df5992d3cdfc57151ff5595561c42fff343fcc01c76f3b95cd1eb9/dark-matter-1.0.52.tar.gz#sha256=7c5cadd1c74c4c85d55ec808f2ecd1a86abf726b7f3dc4b8755a32dc81a57094 (from https://pypi.org/simple/dark-matter/), version: 1.0.52
2021-03-02T08:33:18,444   Found link https://files.pythonhosted.org/packages/d4/a7/8e4a7fc079ce3324a605902fb7fe865ab846ba3376408987680cc68703c7/dark-matter-1.0.53.tar.gz#sha256=c06386be8fc1f85e76fc6f7c6b8ea6597503a9c238e5368e0975f18ea9fe3f6a (from https://pypi.org/simple/dark-matter/), version: 1.0.53
2021-03-02T08:33:18,445   Found link https://files.pythonhosted.org/packages/a8/50/55d45de9c1903904647e651a955b56dff452d61f9e095a5004a149ab2eca/dark-matter-1.0.54.tar.gz#sha256=cb4fefda8208eb0d40c4b172c30286b4be960018e89c89aacb94f177cbd0a77a (from https://pypi.org/simple/dark-matter/), version: 1.0.54
2021-03-02T08:33:18,446   Found link https://files.pythonhosted.org/packages/47/41/cc272f599662d184f754abc67ee763ac9da02c5d9ef5d1155effe67d132f/dark-matter-1.0.55.tar.gz#sha256=d1b4537860411417b98b32252f8a363623c263464c32d994cd442de74e36d4d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.55
2021-03-02T08:33:18,446   Found link https://files.pythonhosted.org/packages/d3/d8/250e7506219460c7da81f6f51bf93cce13d21b461392dcbfa1311e504a95/dark-matter-1.0.56.tar.gz#sha256=d5cbddab4a2b8cc948329f46660259c2bb30b866446ddfc12e8c6b8ddc9822ff (from https://pypi.org/simple/dark-matter/), version: 1.0.56
2021-03-02T08:33:18,447   Found link https://files.pythonhosted.org/packages/81/c7/3bf4ec17c4f0e02ca7741f7ede49d58680f12b48a4a7350031ffe8b38ba1/dark-matter-1.0.57.tar.gz#sha256=3d33c771486b56c8a4dd10fb70f91e4c0ce1d279d05cbdf6dac92cceffb35809 (from https://pypi.org/simple/dark-matter/), version: 1.0.57
2021-03-02T08:33:18,448   Found link https://files.pythonhosted.org/packages/f1/d5/6e02cb418664b484f16ea42b60a86add44acf56dda4875001528957c27b2/dark-matter-1.0.58.tar.gz#sha256=6a9e75658cacc7ae7e9926d0debd5605e15e5761452455e4f65c96b3cd947c6b (from https://pypi.org/simple/dark-matter/), version: 1.0.58
2021-03-02T08:33:18,449   Found link https://files.pythonhosted.org/packages/5a/d3/a69ed2feeac3afcb852a8bcce6cadd5b541cd78de3756f0519a62ca29371/dark-matter-1.0.59.tar.gz#sha256=1f0c71e01cce5ca62b1599c974ff24b8b211349f880c365ecbdce369c6877280 (from https://pypi.org/simple/dark-matter/), version: 1.0.59
2021-03-02T08:33:18,450   Found link https://files.pythonhosted.org/packages/68/70/96bd4a89d1c5f40e05d734be94ae1571be35c0b4c4e19e22c0be893c9e1c/dark-matter-1.0.60.tar.gz#sha256=933a4cc3f34ed03198cacedaab9cc0915402bfff0ad238a0f879c7b246243f02 (from https://pypi.org/simple/dark-matter/), version: 1.0.60
2021-03-02T08:33:18,451   Found link https://files.pythonhosted.org/packages/55/52/ab50ff5d12bb5efd1171a964a4f5baa03edb0091dfa5c79af08fbbe4da16/dark-matter-1.0.61.tar.gz#sha256=09e5bdfd05c954d34fc87541f61a416169ae53daea1a22723de915a9f50ea9e4 (from https://pypi.org/simple/dark-matter/), version: 1.0.61
2021-03-02T08:33:18,452   Found link https://files.pythonhosted.org/packages/ab/de/cc9a342e642f66e60c8ff98d1786229d5cfcfb0306158f0c19ef61059303/dark-matter-1.0.62.tar.gz#sha256=6f7347e0923abd2eb2118862a03966c5204262e5d496e11900de3aed43724265 (from https://pypi.org/simple/dark-matter/), version: 1.0.62
2021-03-02T08:33:18,453   Found link https://files.pythonhosted.org/packages/cd/a5/713b8a9f25437fafe2a34291ca34f945c9e1394c2e600f73e5abd8e3282e/dark-matter-1.0.63.tar.gz#sha256=fca60020cce6b249f61f6ae5e268dbd20f71a2d257bb668c84313ca29d6873b1 (from https://pypi.org/simple/dark-matter/), version: 1.0.63
2021-03-02T08:33:18,454   Found link https://files.pythonhosted.org/packages/77/fe/320a21e0c4c116bd28487af7156a9937a90dcc44f70c4f720267e9b14291/dark-matter-1.0.64.tar.gz#sha256=d1c1764b08f3fbdf71f46a5f9acbe0deadb96d5af5b4b99d8b19e13e4abe9e3d (from https://pypi.org/simple/dark-matter/), version: 1.0.64
2021-03-02T08:33:18,455   Found link https://files.pythonhosted.org/packages/a0/08/9be54a6570a6acf6f87d5ca8ff9f91660697fc32212d0be3601785e796b9/dark-matter-1.0.65.tar.gz#sha256=1332fafc881be70d395aa69ed174c0036941f2d4f8e170f24ba6c0fa14397de6 (from https://pypi.org/simple/dark-matter/), version: 1.0.65
2021-03-02T08:33:18,456   Found link https://files.pythonhosted.org/packages/7b/61/46caedf674111789641d78a4252b26d1ea43d3d8c77f906b3abc7c638acc/dark-matter-1.0.66.tar.gz#sha256=a0ad6f3e8afe8294c1aa5011577533334d2a6cbb16eaaa9b48a451fe0a9db293 (from https://pypi.org/simple/dark-matter/), version: 1.0.66
2021-03-02T08:33:18,457   Found link https://files.pythonhosted.org/packages/97/54/fc8129e31460a4007b2d328e37efeb55a3488b7a7a34592e0c738ac27079/dark-matter-1.0.67.tar.gz#sha256=709dbe5d0c6df732587900ea0ee3a8508fd43a37d7aff3ec5387bbee7d7917cd (from https://pypi.org/simple/dark-matter/), version: 1.0.67
2021-03-02T08:33:18,458   Found link https://files.pythonhosted.org/packages/e5/33/890848c35cb392c57712943c79ffe317ce401bd2db2a616637719f8c5522/dark-matter-1.0.68.tar.gz#sha256=5426893dee726d1f3da0d38176f4489d983e698b36586b2a5d4030ccfd38ae9f (from https://pypi.org/simple/dark-matter/), version: 1.0.68
2021-03-02T08:33:18,458   Found link https://files.pythonhosted.org/packages/c2/23/5e4253583920bada6ee2f5204fbaf8a745527f8ba5c585ac8891fa959991/dark-matter-1.0.69.tar.gz#sha256=494ab515566d76d337f7b25186921029e01e84460ae1f2d81c355a9ae135a18c (from https://pypi.org/simple/dark-matter/), version: 1.0.69
2021-03-02T08:33:18,459   Found link https://files.pythonhosted.org/packages/3d/6a/1cf82dcc5f77ac300a3ee4c1fce72edad81280795e42f0da80b67b3a1838/dark-matter-1.0.70.tar.gz#sha256=f74facc816c78353ee9cdeeac334e9e03d05c38cc381588def6443125fe7ff17 (from https://pypi.org/simple/dark-matter/), version: 1.0.70
2021-03-02T08:33:18,460   Found link https://files.pythonhosted.org/packages/64/9a/ace6de00719320e68408c58f3abe036645a29901f17e3e1cd356260cb9f5/dark-matter-1.0.71.tar.gz#sha256=f0ed0a32bf00786a18d3b50596ad79ec24f01ed3fa9d56f36efec9db58a750a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.71
2021-03-02T08:33:18,461   Found link https://files.pythonhosted.org/packages/94/d0/a1e5aabab8ad66683757b3b0569d672da3528a5a8619f830f33c2d6bb179/dark-matter-1.0.72.tar.gz#sha256=3cab3d9241f6fccf0e1a88ed3f572b90bd296c41810b85b49054ba4238742061 (from https://pypi.org/simple/dark-matter/), version: 1.0.72
2021-03-02T08:33:18,463   Found link https://files.pythonhosted.org/packages/a2/1a/f7d17f7e7d196b1fb5382a27adc6ae61bbc4c47ad812c9e78de890b61743/dark-matter-1.0.73.tar.gz#sha256=ef4359ea0a02e00b3f1b06754da34fb6cfbe030ecd3976dac50841c0ae46c062 (from https://pypi.org/simple/dark-matter/), version: 1.0.73
2021-03-02T08:33:18,464   Found link https://files.pythonhosted.org/packages/8e/dc/f8fbeb00d964a029f3e444ed65ba9ca0f69e83c4b19d93efb858ac9d67cf/dark-matter-1.0.74.tar.gz#sha256=90c2fc0dcc27bbd558041ae982768c630c602360754f3e07577c2711966c1fb7 (from https://pypi.org/simple/dark-matter/), version: 1.0.74
2021-03-02T08:33:18,465   Found link https://files.pythonhosted.org/packages/26/50/60d51f6d26ec912a10cd058c4221c4794813080bcccd2f5af993a2bfe973/dark-matter-1.0.75.tar.gz#sha256=9db8994744be84b8d67035bff720b4b8330e8682339d3bef01a857210d400c50 (from https://pypi.org/simple/dark-matter/), version: 1.0.75
2021-03-02T08:33:18,466   Found link https://files.pythonhosted.org/packages/03/bb/45b48f894b2b3f2a08e9e3c3c07ce133db94e91a363688f3ab9ce4969d80/dark-matter-1.0.76.tar.gz#sha256=940772c257a0f785f0f5efa53a7075692b5fa889a6c1d3432e17929fc30a1179 (from https://pypi.org/simple/dark-matter/), version: 1.0.76
2021-03-02T08:33:18,467   Found link https://files.pythonhosted.org/packages/5a/b2/63dea9b0ab7517190dd58b390cd9f0c007da74ad33c1ce37a74e6640e62c/dark-matter-1.0.77.tar.gz#sha256=e027b5a28158d9e74d712bdc4651580fe3c14be15a124a7a7634523e2cafd842 (from https://pypi.org/simple/dark-matter/), version: 1.0.77
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2021-03-02T08:33:18,665   Found link https://files.pythonhosted.org/packages/a2/29/f9efce08d7da120118a4d3d554207a40ec0fe7f640338dcce34459ed65de/dark-matter-3.2.2.tar.gz#sha256=a774c902f7c8c61d0a03b485283767d52a414e8835a2286295f2fbe94f982d6c (from https://pypi.org/simple/dark-matter/), version: 3.2.2
2021-03-02T08:33:18,666   Found link https://files.pythonhosted.org/packages/fe/74/37ca77e38cc0080fbe164321e7ab6be1552960f966c11c12ba6a138c1cdb/dark-matter-3.2.3.tar.gz#sha256=51d99ef9b8c7628613fed3519fac86d2575c56f4977150d0ec017a440b869692 (from https://pypi.org/simple/dark-matter/), version: 3.2.3
2021-03-02T08:33:18,667   Found link https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 (from https://pypi.org/simple/dark-matter/), version: 3.2.4
2021-03-02T08:33:18,812 Given no hashes to check 1 links for project 'dark-matter': discarding no candidates
2021-03-02T08:33:18,850 Collecting dark-matter==3.2.4
2021-03-02T08:33:18,854   Created temporary directory: /tmp/pip-unpack-shmmahhe
2021-03-02T08:33:19,093   Downloading dark-matter-3.2.4.tar.gz (330 kB)
2021-03-02T08:33:20,593   Added dark-matter==3.2.4 from https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 to build tracker '/tmp/pip-req-tracker-qe9w1ngo'
2021-03-02T08:33:20,597     Running setup.py (path:/tmp/pip-wheel-70xsj8jy/dark-matter_3b10868ae3fc4ac5939b55135174a176/setup.py) egg_info for package dark-matter
2021-03-02T08:33:20,600     Created temporary directory: /tmp/pip-pip-egg-info-i57c0n9i
2021-03-02T08:33:20,601     Running command python setup.py egg_info
2021-03-02T08:33:22,877     running egg_info
2021-03-02T08:33:22,884     creating /tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info
2021-03-02T08:33:22,887     writing dependency_links to /tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info/dependency_links.txt
2021-03-02T08:33:22,889     writing requirements to /tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info/requires.txt
2021-03-02T08:33:22,891     writing /tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info/PKG-INFO
2021-03-02T08:33:22,897     writing top-level names to /tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info/top_level.txt
2021-03-02T08:33:22,901     writing manifest file '/tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info/SOURCES.txt'
2021-03-02T08:33:23,336     reading manifest file '/tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info/SOURCES.txt'
2021-03-02T08:33:23,367     writing manifest file '/tmp/pip-pip-egg-info-i57c0n9i/dark_matter.egg-info/SOURCES.txt'
2021-03-02T08:33:23,502   Source in /tmp/pip-wheel-70xsj8jy/dark-matter_3b10868ae3fc4ac5939b55135174a176 has version 3.2.4, which satisfies requirement dark-matter==3.2.4 from https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3
2021-03-02T08:33:23,504   Removed dark-matter==3.2.4 from https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 from build tracker '/tmp/pip-req-tracker-qe9w1ngo'
2021-03-02T08:33:23,512 Created temporary directory: /tmp/pip-unpack-wf647du9
2021-03-02T08:33:23,514 Building wheels for collected packages: dark-matter
2021-03-02T08:33:23,522   Created temporary directory: /tmp/pip-wheel-rk_roil_
2021-03-02T08:33:23,523   Building wheel for dark-matter (setup.py): started
2021-03-02T08:33:23,524   Destination directory: /tmp/pip-wheel-rk_roil_
2021-03-02T08:33:23,525   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-70xsj8jy/dark-matter_3b10868ae3fc4ac5939b55135174a176/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-70xsj8jy/dark-matter_3b10868ae3fc4ac5939b55135174a176/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rk_roil_
2021-03-02T08:33:25,826   running bdist_wheel
2021-03-02T08:33:25,841   running build
2021-03-02T08:33:25,842   running build_py
2021-03-02T08:33:26,189   creating build
2021-03-02T08:33:26,189   creating build/lib
2021-03-02T08:33:26,191   creating build/lib/dark
2021-03-02T08:33:26,194   copying dark/alignments.py -> build/lib/dark
2021-03-02T08:33:26,200   copying dark/entrez.py -> build/lib/dark
2021-03-02T08:33:26,204   copying dark/distance.py -> build/lib/dark
2021-03-02T08:33:26,208   copying dark/colors.py -> build/lib/dark
2021-03-02T08:33:26,213   copying dark/process.py -> build/lib/dark
2021-03-02T08:33:26,218   copying dark/orfs.py -> build/lib/dark
2021-03-02T08:33:26,222   copying dark/genomes.py -> build/lib/dark
2021-03-02T08:33:26,228   copying dark/html.py -> build/lib/dark
2021-03-02T08:33:26,235   copying dark/dimension.py -> build/lib/dark
2021-03-02T08:33:26,240   copying dark/ipynb.py -> build/lib/dark
2021-03-02T08:33:26,246   copying dark/aa.py -> build/lib/dark
2021-03-02T08:33:26,254   copying dark/titles.py -> build/lib/dark
2021-03-02T08:33:26,260   copying dark/codonDistance.py -> build/lib/dark
2021-03-02T08:33:26,264   copying dark/__init__.py -> build/lib/dark
2021-03-02T08:33:26,268   copying dark/taxonomy.py -> build/lib/dark
2021-03-02T08:33:26,277   copying dark/graphics.py -> build/lib/dark
2021-03-02T08:33:26,286   copying dark/dna.py -> build/lib/dark
2021-03-02T08:33:26,293   copying dark/database.py -> build/lib/dark
2021-03-02T08:33:26,298   copying dark/hsp.py -> build/lib/dark
2021-03-02T08:33:26,305   copying dark/summarize.py -> build/lib/dark
2021-03-02T08:33:26,311   copying dark/bowtie2.py -> build/lib/dark
2021-03-02T08:33:26,318   copying dark/fasta.py -> build/lib/dark
2021-03-02T08:33:26,325   copying dark/utils.py -> build/lib/dark
2021-03-02T08:33:26,332   copying dark/mutations.py -> build/lib/dark
2021-03-02T08:33:26,339   copying dark/cigar.py -> build/lib/dark
2021-03-02T08:33:26,344   copying dark/reads.py -> build/lib/dark
2021-03-02T08:33:26,356   copying dark/features.py -> build/lib/dark
2021-03-02T08:33:26,363   copying dark/local_align.py -> build/lib/dark
2021-03-02T08:33:26,371   copying dark/consensus.py -> build/lib/dark
2021-03-02T08:33:26,377   copying dark/intervals.py -> build/lib/dark
2021-03-02T08:33:26,383   copying dark/genbank.py -> build/lib/dark
2021-03-02T08:33:26,389   copying dark/fasta_ss.py -> build/lib/dark
2021-03-02T08:33:26,393   copying dark/btop.py -> build/lib/dark
2021-03-02T08:33:26,398   copying dark/filter.py -> build/lib/dark
2021-03-02T08:33:26,404   copying dark/analyze_reads.py -> build/lib/dark
2021-03-02T08:33:26,408   copying dark/sequence.py -> build/lib/dark
2021-03-02T08:33:26,412   copying dark/fpcache.py -> build/lib/dark
2021-03-02T08:33:26,417   copying dark/simplify.py -> build/lib/dark
2021-03-02T08:33:26,421   copying dark/baseimage.py -> build/lib/dark
2021-03-02T08:33:26,425   copying dark/ncbidb.py -> build/lib/dark
2021-03-02T08:33:26,430   copying dark/score.py -> build/lib/dark
2021-03-02T08:33:26,435   copying dark/errors.py -> build/lib/dark
2021-03-02T08:33:26,440   copying dark/aligners.py -> build/lib/dark
2021-03-02T08:33:26,446   copying dark/fastq.py -> build/lib/dark
2021-03-02T08:33:26,451   copying dark/sam.py -> build/lib/dark
2021-03-02T08:33:26,459   copying dark/proteins.py -> build/lib/dark
2021-03-02T08:33:26,469   creating build/lib/dark/blast
2021-03-02T08:33:26,471   copying dark/blast/alignments.py -> build/lib/dark/blast
2021-03-02T08:33:26,479   copying dark/blast/__init__.py -> build/lib/dark/blast
2021-03-02T08:33:26,484   copying dark/blast/hsp.py -> build/lib/dark/blast
2021-03-02T08:33:26,491   copying dark/blast/params.py -> build/lib/dark/blast
2021-03-02T08:33:26,495   copying dark/blast/conversion.py -> build/lib/dark/blast
2021-03-02T08:33:26,500   copying dark/blast/score.py -> build/lib/dark/blast
2021-03-02T08:33:26,504   copying dark/blast/hacks.py -> build/lib/dark/blast
2021-03-02T08:33:26,509   copying dark/blast/records.py -> build/lib/dark/blast
2021-03-02T08:33:26,516   creating build/lib/dark/diamond
2021-03-02T08:33:26,519   copying dark/diamond/alignments.py -> build/lib/dark/diamond
2021-03-02T08:33:26,526   copying dark/diamond/__init__.py -> build/lib/dark/diamond
2021-03-02T08:33:26,531   copying dark/diamond/hsp.py -> build/lib/dark/diamond
2021-03-02T08:33:26,536   copying dark/diamond/conversion.py -> build/lib/dark/diamond
2021-03-02T08:33:26,542   copying dark/diamond/run.py -> build/lib/dark/diamond
2021-03-02T08:33:26,546   copying dark/diamond/sam.py -> build/lib/dark/diamond
2021-03-02T08:33:26,555   creating build/lib/dark/civ
2021-03-02T08:33:26,558   copying dark/civ/html.py -> build/lib/dark/civ
2021-03-02T08:33:26,565   copying dark/civ/__init__.py -> build/lib/dark/civ
2021-03-02T08:33:26,570   copying dark/civ/graphics.py -> build/lib/dark/civ
2021-03-02T08:33:26,577   copying dark/civ/proteins.py -> build/lib/dark/civ
2021-03-02T08:33:26,610   running build_scripts
2021-03-02T08:33:26,611   creating build/scripts-3.5
2021-03-02T08:33:26,615   copying and adjusting bin/aa-info.py -> build/scripts-3.5
2021-03-02T08:33:26,619   copying and adjusting bin/aa-to-dna.py -> build/scripts-3.5
2021-03-02T08:33:26,622   copying and adjusting bin/aa-to-properties.py -> build/scripts-3.5
2021-03-02T08:33:26,626   copying and adjusting bin/adaptor-distances.py -> build/scripts-3.5
2021-03-02T08:33:26,630   copying and adjusting bin/alignment-panel-civ.py -> build/scripts-3.5
2021-03-02T08:33:26,636   copying and adjusting bin/alignments-per-read.py -> build/scripts-3.5
2021-03-02T08:33:26,641   copying and adjusting bin/bit-score-to-e-value.py -> build/scripts-3.5
2021-03-02T08:33:26,646   copying and adjusting bin/cat-json-blast-records.py -> build/scripts-3.5
2021-03-02T08:33:26,651   copying and adjusting bin/check-fasta-json-blast-consistency.py -> build/scripts-3.5
2021-03-02T08:33:26,655   copying and adjusting bin/codon-distance.py -> build/scripts-3.5
2021-03-02T08:33:26,659   copying and adjusting bin/compare-consensuses.py -> build/scripts-3.5
2021-03-02T08:33:26,664   copying and adjusting bin/compare-sequences.py -> build/scripts-3.5
2021-03-02T08:33:26,669   copying and adjusting bin/convert-blast-xml-to-json.py -> build/scripts-3.5
2021-03-02T08:33:26,673   copying and adjusting bin/convert-diamond-to-json.py -> build/scripts-3.5
2021-03-02T08:33:26,677   copying and adjusting bin/convert-diamond-to-sam.py -> build/scripts-3.5
2021-03-02T08:33:26,684   copying bin/convert-sam-to-fastq.sh -> build/scripts-3.5
2021-03-02T08:33:26,691   copying and adjusting bin/create-newick-relabeling-output.py -> build/scripts-3.5
2021-03-02T08:33:26,695   copying and adjusting bin/dark-matter-version.py -> build/scripts-3.5
2021-03-02T08:33:26,699   copying and adjusting bin/describe-protein-database.py -> build/scripts-3.5
2021-03-02T08:33:26,702   copying and adjusting bin/dna-to-aa.py -> build/scripts-3.5
2021-03-02T08:33:26,706   copying bin/download-genbank.sh -> build/scripts-3.5
2021-03-02T08:33:26,712   copying and adjusting bin/e-value-to-bit-score.py -> build/scripts-3.5
2021-03-02T08:33:26,716   copying and adjusting bin/extract-ORFs.py -> build/scripts-3.5
2021-03-02T08:33:26,723   copying and adjusting bin/fasta-base-indices.py -> build/scripts-3.5
2021-03-02T08:33:26,728   copying and adjusting bin/fasta-count.py -> build/scripts-3.5
2021-03-02T08:33:26,733   copying bin/fasta-diff.sh -> build/scripts-3.5
2021-03-02T08:33:26,739   copying and adjusting bin/fasta-identity-table.py -> build/scripts-3.5
2021-03-02T08:33:26,746   copying and adjusting bin/fasta-ids.py -> build/scripts-3.5
2021-03-02T08:33:26,750   copying and adjusting bin/fasta-join.py -> build/scripts-3.5
2021-03-02T08:33:26,753   copying and adjusting bin/fasta-lengths.py -> build/scripts-3.5
2021-03-02T08:33:26,757   copying and adjusting bin/fasta-sequences.py -> build/scripts-3.5
2021-03-02T08:33:26,762   copying and adjusting bin/fasta-sort.py -> build/scripts-3.5
2021-03-02T08:33:26,766   copying and adjusting bin/fasta-split-by-id.py -> build/scripts-3.5
2021-03-02T08:33:26,772   copying and adjusting bin/fasta-subset.py -> build/scripts-3.5
2021-03-02T08:33:26,777   copying and adjusting bin/fasta-subtraction.py -> build/scripts-3.5
2021-03-02T08:33:26,780   copying and adjusting bin/fasta-to-phylip.py -> build/scripts-3.5
2021-03-02T08:33:26,784   copying and adjusting bin/fasta-variable-sites.py -> build/scripts-3.5
2021-03-02T08:33:26,788   copying and adjusting bin/filter-fasta-by-complexity.py -> build/scripts-3.5
2021-03-02T08:33:26,792   copying and adjusting bin/filter-fasta-by-taxonomy.py -> build/scripts-3.5
2021-03-02T08:33:26,796   copying and adjusting bin/filter-fasta.py -> build/scripts-3.5
2021-03-02T08:33:26,801   copying and adjusting bin/filter-hits-to-fasta.py -> build/scripts-3.5
2021-03-02T08:33:26,808   copying and adjusting bin/filter-reads-alignments.py -> build/scripts-3.5
2021-03-02T08:33:26,815   copying and adjusting bin/filter-sam.py -> build/scripts-3.5
2021-03-02T08:33:26,821   copying and adjusting bin/find-hits.py -> build/scripts-3.5
2021-03-02T08:33:26,825   copying and adjusting bin/format-fasta.py -> build/scripts-3.5
2021-03-02T08:33:26,830   copying and adjusting bin/genome-protein-summary.py -> build/scripts-3.5
2021-03-02T08:33:26,837   copying and adjusting bin/get-features.py -> build/scripts-3.5
2021-03-02T08:33:26,841   copying and adjusting bin/get-hosts.py -> build/scripts-3.5
2021-03-02T08:33:26,845   copying and adjusting bin/get-reads.py -> build/scripts-3.5
2021-03-02T08:33:26,849   copying and adjusting bin/get-taxonomy.py -> build/scripts-3.5
2021-03-02T08:33:26,852   copying and adjusting bin/graph-evalues.py -> build/scripts-3.5
2021-03-02T08:33:26,856   copying and adjusting bin/local-align.py -> build/scripts-3.5
2021-03-02T08:33:26,860   copying and adjusting bin/make-consensus.py -> build/scripts-3.5
2021-03-02T08:33:26,867   copying and adjusting bin/make-fasta-database.py -> build/scripts-3.5
2021-03-02T08:33:26,872   copying and adjusting bin/make-protein-database.py -> build/scripts-3.5
2021-03-02T08:33:26,879   copying and adjusting bin/ncbi-fetch-id.py -> build/scripts-3.5
2021-03-02T08:33:26,882   copying and adjusting bin/newick-to-ascii.py -> build/scripts-3.5
2021-03-02T08:33:26,886   copying and adjusting bin/noninteractive-alignment-panel.py -> build/scripts-3.5
2021-03-02T08:33:26,893   copying and adjusting bin/parse-genbank-flat-file.py -> build/scripts-3.5
2021-03-02T08:33:26,897   copying and adjusting bin/position-summary.py -> build/scripts-3.5
2021-03-02T08:33:26,901   copying bin/pre-commit.sh -> build/scripts-3.5
2021-03-02T08:33:26,909   copying and adjusting bin/print-blast-xml-for-derek.py -> build/scripts-3.5
2021-03-02T08:33:26,915   copying and adjusting bin/print-blast-xml.py -> build/scripts-3.5
2021-03-02T08:33:26,920   copying and adjusting bin/print-read-lengths.py -> build/scripts-3.5
2021-03-02T08:33:26,924   copying and adjusting bin/proteins-to-pathogens.py -> build/scripts-3.5
2021-03-02T08:33:26,931   copying and adjusting bin/proteins-to-pathogens-civ.py -> build/scripts-3.5
2021-03-02T08:33:26,937   copying and adjusting bin/randomize-fasta.py -> build/scripts-3.5
2021-03-02T08:33:26,941   copying and adjusting bin/read-blast-json.py -> build/scripts-3.5
2021-03-02T08:33:26,945   copying and adjusting bin/read-blast-xml.py -> build/scripts-3.5
2021-03-02T08:33:26,949   copying and adjusting bin/relabel-newick-tree.py -> build/scripts-3.5
2021-03-02T08:33:26,954   copying and adjusting bin/run-bwa.py -> build/scripts-3.5
2021-03-02T08:33:26,959   copying and adjusting bin/run-bowtie2.py -> build/scripts-3.5
2021-03-02T08:33:26,966   copying and adjusting bin/sam-coverage.py -> build/scripts-3.5
2021-03-02T08:33:26,971   copying and adjusting bin/sam-coverage-depth.py -> build/scripts-3.5
2021-03-02T08:33:26,976   copying and adjusting bin/sam-to-fasta-alignment.py -> build/scripts-3.5
2021-03-02T08:33:26,980   copying and adjusting bin/sam-reference-read-counts.py -> build/scripts-3.5
2021-03-02T08:33:26,985   copying and adjusting bin/sam-references.py -> build/scripts-3.5
2021-03-02T08:33:26,989   copying and adjusting bin/sff-to-fastq.py -> build/scripts-3.5
2021-03-02T08:33:26,994   copying and adjusting bin/split-fasta-by-adaptors.py -> build/scripts-3.5
2021-03-02T08:33:26,1000   copying and adjusting bin/subset-protein-database.py -> build/scripts-3.5
2021-03-02T08:33:27,004   copying and adjusting bin/summarize-fasta-bases.py -> build/scripts-3.5
2021-03-02T08:33:27,008   copying and adjusting bin/summarize-reads.py -> build/scripts-3.5
2021-03-02T08:33:27,011   copying and adjusting bin/translate.py -> build/scripts-3.5
2021-03-02T08:33:27,015   copying and adjusting bin/trim-primers.py -> build/scripts-3.5
2021-03-02T08:33:27,018   copying and adjusting bin/trim-reads.py -> build/scripts-3.5
2021-03-02T08:33:27,022   copying and adjusting bin/write-htcondor-job-spec.py -> build/scripts-3.5
2021-03-02T08:33:27,027   changing mode of build/scripts-3.5/aa-info.py from 644 to 755
2021-03-02T08:33:27,029   changing mode of build/scripts-3.5/aa-to-dna.py from 644 to 755
2021-03-02T08:33:27,030   changing mode of build/scripts-3.5/aa-to-properties.py from 644 to 755
2021-03-02T08:33:27,031   changing mode of build/scripts-3.5/adaptor-distances.py from 644 to 755
2021-03-02T08:33:27,032   changing mode of build/scripts-3.5/alignment-panel-civ.py from 644 to 755
2021-03-02T08:33:27,033   changing mode of build/scripts-3.5/alignments-per-read.py from 644 to 755
2021-03-02T08:33:27,035   changing mode of build/scripts-3.5/bit-score-to-e-value.py from 644 to 755
2021-03-02T08:33:27,036   changing mode of build/scripts-3.5/cat-json-blast-records.py from 644 to 755
2021-03-02T08:33:27,037   changing mode of build/scripts-3.5/check-fasta-json-blast-consistency.py from 644 to 755
2021-03-02T08:33:27,038   changing mode of build/scripts-3.5/codon-distance.py from 644 to 755
2021-03-02T08:33:27,039   changing mode of build/scripts-3.5/compare-consensuses.py from 644 to 755
2021-03-02T08:33:27,041   changing mode of build/scripts-3.5/compare-sequences.py from 644 to 755
2021-03-02T08:33:27,042   changing mode of build/scripts-3.5/convert-blast-xml-to-json.py from 644 to 755
2021-03-02T08:33:27,043   changing mode of build/scripts-3.5/convert-diamond-to-json.py from 644 to 755
2021-03-02T08:33:27,044   changing mode of build/scripts-3.5/convert-diamond-to-sam.py from 644 to 755
2021-03-02T08:33:27,045   changing mode of build/scripts-3.5/create-newick-relabeling-output.py from 644 to 755
2021-03-02T08:33:27,046   changing mode of build/scripts-3.5/dark-matter-version.py from 644 to 755
2021-03-02T08:33:27,047   changing mode of build/scripts-3.5/describe-protein-database.py from 644 to 755
2021-03-02T08:33:27,048   changing mode of build/scripts-3.5/dna-to-aa.py from 644 to 755
2021-03-02T08:33:27,048   changing mode of build/scripts-3.5/e-value-to-bit-score.py from 644 to 755
2021-03-02T08:33:27,049   changing mode of build/scripts-3.5/extract-ORFs.py from 644 to 755
2021-03-02T08:33:27,050   changing mode of build/scripts-3.5/fasta-base-indices.py from 644 to 755
2021-03-02T08:33:27,050   changing mode of build/scripts-3.5/fasta-count.py from 644 to 755
2021-03-02T08:33:27,051   changing mode of build/scripts-3.5/fasta-identity-table.py from 644 to 755
2021-03-02T08:33:27,052   changing mode of build/scripts-3.5/fasta-ids.py from 644 to 755
2021-03-02T08:33:27,052   changing mode of build/scripts-3.5/fasta-join.py from 644 to 755
2021-03-02T08:33:27,053   changing mode of build/scripts-3.5/fasta-lengths.py from 644 to 755
2021-03-02T08:33:27,054   changing mode of build/scripts-3.5/fasta-sequences.py from 644 to 755
2021-03-02T08:33:27,054   changing mode of build/scripts-3.5/fasta-sort.py from 644 to 755
2021-03-02T08:33:27,055   changing mode of build/scripts-3.5/fasta-split-by-id.py from 644 to 755
2021-03-02T08:33:27,056   changing mode of build/scripts-3.5/fasta-subset.py from 644 to 755
2021-03-02T08:33:27,056   changing mode of build/scripts-3.5/fasta-subtraction.py from 644 to 755
2021-03-02T08:33:27,057   changing mode of build/scripts-3.5/fasta-to-phylip.py from 644 to 755
2021-03-02T08:33:27,058   changing mode of build/scripts-3.5/fasta-variable-sites.py from 644 to 755
2021-03-02T08:33:27,058   changing mode of build/scripts-3.5/filter-fasta-by-complexity.py from 644 to 755
2021-03-02T08:33:27,059   changing mode of build/scripts-3.5/filter-fasta-by-taxonomy.py from 644 to 755
2021-03-02T08:33:27,060   changing mode of build/scripts-3.5/filter-fasta.py from 644 to 755
2021-03-02T08:33:27,061   changing mode of build/scripts-3.5/filter-hits-to-fasta.py from 644 to 755
2021-03-02T08:33:27,061   changing mode of build/scripts-3.5/filter-reads-alignments.py from 644 to 755
2021-03-02T08:33:27,062   changing mode of build/scripts-3.5/filter-sam.py from 644 to 755
2021-03-02T08:33:27,063   changing mode of build/scripts-3.5/find-hits.py from 644 to 755
2021-03-02T08:33:27,064   changing mode of build/scripts-3.5/format-fasta.py from 644 to 755
2021-03-02T08:33:27,064   changing mode of build/scripts-3.5/genome-protein-summary.py from 644 to 755
2021-03-02T08:33:27,065   changing mode of build/scripts-3.5/get-features.py from 644 to 755
2021-03-02T08:33:27,066   changing mode of build/scripts-3.5/get-hosts.py from 644 to 755
2021-03-02T08:33:27,066   changing mode of build/scripts-3.5/get-reads.py from 644 to 755
2021-03-02T08:33:27,067   changing mode of build/scripts-3.5/get-taxonomy.py from 644 to 755
2021-03-02T08:33:27,068   changing mode of build/scripts-3.5/graph-evalues.py from 644 to 755
2021-03-02T08:33:27,069   changing mode of build/scripts-3.5/local-align.py from 644 to 755
2021-03-02T08:33:27,070   changing mode of build/scripts-3.5/make-consensus.py from 644 to 755
2021-03-02T08:33:27,070   changing mode of build/scripts-3.5/make-fasta-database.py from 644 to 755
2021-03-02T08:33:27,071   changing mode of build/scripts-3.5/make-protein-database.py from 644 to 755
2021-03-02T08:33:27,072   changing mode of build/scripts-3.5/ncbi-fetch-id.py from 644 to 755
2021-03-02T08:33:27,073   changing mode of build/scripts-3.5/newick-to-ascii.py from 644 to 755
2021-03-02T08:33:27,074   changing mode of build/scripts-3.5/noninteractive-alignment-panel.py from 644 to 755
2021-03-02T08:33:27,074   changing mode of build/scripts-3.5/parse-genbank-flat-file.py from 644 to 755
2021-03-02T08:33:27,075   changing mode of build/scripts-3.5/position-summary.py from 644 to 755
2021-03-02T08:33:27,076   changing mode of build/scripts-3.5/print-blast-xml-for-derek.py from 644 to 755
2021-03-02T08:33:27,077   changing mode of build/scripts-3.5/print-blast-xml.py from 644 to 755
2021-03-02T08:33:27,078   changing mode of build/scripts-3.5/print-read-lengths.py from 644 to 755
2021-03-02T08:33:27,078   changing mode of build/scripts-3.5/proteins-to-pathogens.py from 644 to 755
2021-03-02T08:33:27,079   changing mode of build/scripts-3.5/proteins-to-pathogens-civ.py from 644 to 755
2021-03-02T08:33:27,080   changing mode of build/scripts-3.5/randomize-fasta.py from 644 to 755
2021-03-02T08:33:27,080   changing mode of build/scripts-3.5/read-blast-json.py from 644 to 755
2021-03-02T08:33:27,081   changing mode of build/scripts-3.5/read-blast-xml.py from 644 to 755
2021-03-02T08:33:27,082   changing mode of build/scripts-3.5/relabel-newick-tree.py from 644 to 755
2021-03-02T08:33:27,083   changing mode of build/scripts-3.5/run-bwa.py from 644 to 755
2021-03-02T08:33:27,083   changing mode of build/scripts-3.5/run-bowtie2.py from 644 to 755
2021-03-02T08:33:27,084   changing mode of build/scripts-3.5/sam-coverage.py from 644 to 755
2021-03-02T08:33:27,085   changing mode of build/scripts-3.5/sam-coverage-depth.py from 644 to 755
2021-03-02T08:33:27,086   changing mode of build/scripts-3.5/sam-to-fasta-alignment.py from 644 to 755
2021-03-02T08:33:27,086   changing mode of build/scripts-3.5/sam-reference-read-counts.py from 644 to 755
2021-03-02T08:33:27,087   changing mode of build/scripts-3.5/sam-references.py from 644 to 755
2021-03-02T08:33:27,088   changing mode of build/scripts-3.5/sff-to-fastq.py from 644 to 755
2021-03-02T08:33:27,088   changing mode of build/scripts-3.5/split-fasta-by-adaptors.py from 644 to 755
2021-03-02T08:33:27,089   changing mode of build/scripts-3.5/subset-protein-database.py from 644 to 755
2021-03-02T08:33:27,090   changing mode of build/scripts-3.5/summarize-fasta-bases.py from 644 to 755
2021-03-02T08:33:27,091   changing mode of build/scripts-3.5/summarize-reads.py from 644 to 755
2021-03-02T08:33:27,091   changing mode of build/scripts-3.5/translate.py from 644 to 755
2021-03-02T08:33:27,092   changing mode of build/scripts-3.5/trim-primers.py from 644 to 755
2021-03-02T08:33:27,093   changing mode of build/scripts-3.5/trim-reads.py from 644 to 755
2021-03-02T08:33:27,094   changing mode of build/scripts-3.5/write-htcondor-job-spec.py from 644 to 755
2021-03-02T08:33:27,101   installing to build/bdist.linux-armv7l/wheel
2021-03-02T08:33:27,101   running install
2021-03-02T08:33:27,103   running install_lib
2021-03-02T08:33:27,111   creating build/bdist.linux-armv7l
2021-03-02T08:33:27,112   creating build/bdist.linux-armv7l/wheel
2021-03-02T08:33:27,118   creating build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,120   copying build/lib/dark/alignments.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,129   copying build/lib/dark/entrez.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,133   copying build/lib/dark/distance.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,137   copying build/lib/dark/colors.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,142   copying build/lib/dark/process.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,148   copying build/lib/dark/orfs.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,155   copying build/lib/dark/genomes.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,162   copying build/lib/dark/html.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,168   copying build/lib/dark/dimension.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,172   copying build/lib/dark/ipynb.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,177   copying build/lib/dark/aa.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,185   copying build/lib/dark/titles.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,193   copying build/lib/dark/codonDistance.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,199   copying build/lib/dark/__init__.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,205   copying build/lib/dark/taxonomy.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,212   copying build/lib/dark/graphics.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,220   copying build/lib/dark/dna.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,227   copying build/lib/dark/database.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,232   copying build/lib/dark/hsp.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,239   copying build/lib/dark/summarize.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,246   copying build/lib/dark/bowtie2.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,252   copying build/lib/dark/fasta.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,259   creating build/bdist.linux-armv7l/wheel/dark/civ
2021-03-02T08:33:27,261   copying build/lib/dark/civ/html.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-03-02T08:33:27,267   copying build/lib/dark/civ/__init__.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-03-02T08:33:27,272   copying build/lib/dark/civ/graphics.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-03-02T08:33:27,281   copying build/lib/dark/civ/proteins.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-03-02T08:33:27,296   copying build/lib/dark/utils.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,303   creating build/bdist.linux-armv7l/wheel/dark/diamond
2021-03-02T08:33:27,305   copying build/lib/dark/diamond/alignments.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-03-02T08:33:27,312   copying build/lib/dark/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-03-02T08:33:27,317   copying build/lib/dark/diamond/hsp.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-03-02T08:33:27,324   copying build/lib/dark/diamond/conversion.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-03-02T08:33:27,332   copying build/lib/dark/diamond/run.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-03-02T08:33:27,336   copying build/lib/dark/diamond/sam.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-03-02T08:33:27,343   copying build/lib/dark/mutations.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,349   copying build/lib/dark/cigar.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,355   copying build/lib/dark/reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,368   copying build/lib/dark/features.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,374   copying build/lib/dark/local_align.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,380   copying build/lib/dark/consensus.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,386   copying build/lib/dark/intervals.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,392   copying build/lib/dark/genbank.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,399   copying build/lib/dark/fasta_ss.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,405   copying build/lib/dark/btop.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,411   copying build/lib/dark/filter.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,417   copying build/lib/dark/analyze_reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,422   copying build/lib/dark/sequence.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,427   copying build/lib/dark/fpcache.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,432   copying build/lib/dark/simplify.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,438   copying build/lib/dark/baseimage.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,446   creating build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,448   copying build/lib/dark/blast/alignments.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,455   copying build/lib/dark/blast/__init__.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,458   copying build/lib/dark/blast/hsp.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,464   copying build/lib/dark/blast/params.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,468   copying build/lib/dark/blast/conversion.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,475   copying build/lib/dark/blast/score.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,481   copying build/lib/dark/blast/hacks.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,487   copying build/lib/dark/blast/records.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-03-02T08:33:27,492   copying build/lib/dark/ncbidb.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,496   copying build/lib/dark/score.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,501   copying build/lib/dark/errors.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,505   copying build/lib/dark/aligners.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,510   copying build/lib/dark/fastq.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,515   copying build/lib/dark/sam.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,525   copying build/lib/dark/proteins.py -> build/bdist.linux-armv7l/wheel/dark
2021-03-02T08:33:27,534   running install_egg_info
2021-03-02T08:33:27,581   running egg_info
2021-03-02T08:33:27,583   writing requirements to dark_matter.egg-info/requires.txt
2021-03-02T08:33:27,585   writing dependency_links to dark_matter.egg-info/dependency_links.txt
2021-03-02T08:33:27,588   writing dark_matter.egg-info/PKG-INFO
2021-03-02T08:33:27,594   writing top-level names to dark_matter.egg-info/top_level.txt
2021-03-02T08:33:27,645   reading manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-03-02T08:33:27,686   writing manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-03-02T08:33:27,690   Copying dark_matter.egg-info to build/bdist.linux-armv7l/wheel/dark_matter-3.2.4-py3.5.egg-info
2021-03-02T08:33:27,720   running install_scripts
2021-03-02T08:33:27,859   creating build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data
2021-03-02T08:33:27,860   creating build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,863   copying build/scripts-3.5/fasta-join.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,868   copying build/scripts-3.5/sam-to-fasta-alignment.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,873   copying build/scripts-3.5/split-fasta-by-adaptors.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,878   copying build/scripts-3.5/format-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,883   copying build/scripts-3.5/bit-score-to-e-value.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,888   copying build/scripts-3.5/fasta-identity-table.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,897   copying build/scripts-3.5/sff-to-fastq.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,903   copying build/scripts-3.5/ncbi-fetch-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,908   copying build/scripts-3.5/fasta-split-by-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,912   copying build/scripts-3.5/convert-diamond-to-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,918   copying build/scripts-3.5/adaptor-distances.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,922   copying build/scripts-3.5/convert-blast-xml-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,927   copying build/scripts-3.5/run-bowtie2.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,935   copying build/scripts-3.5/compare-consensuses.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,942   copying build/scripts-3.5/filter-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,948   copying build/scripts-3.5/write-htcondor-job-spec.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,953   copying build/scripts-3.5/genome-protein-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,959   copying build/scripts-3.5/fasta-count.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,964   copying build/scripts-3.5/pre-commit.sh -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,969   copying build/scripts-3.5/fasta-subtraction.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,975   copying build/scripts-3.5/codon-distance.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,980   copying build/scripts-3.5/read-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,986   copying build/scripts-3.5/summarize-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,991   copying build/scripts-3.5/sam-coverage.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,995   copying build/scripts-3.5/read-blast-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:27,1000   copying build/scripts-3.5/find-hits.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:28,004   copying build/scripts-3.5/make-fasta-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:28,010   copying build/scripts-3.5/check-fasta-json-blast-consistency.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:28,016   copying build/scripts-3.5/trim-primers.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:28,022   copying build/scripts-3.5/run-bwa.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:28,028   copying build/scripts-3.5/aa-to-properties.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
2021-03-02T08:33:28,032   copying build/scripts-3.5/fasta-base-indices.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts
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2021-03-02T08:33:28,388   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/print-read-lengths.py to 755
2021-03-02T08:33:28,389   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/fasta-variable-sites.py to 755
2021-03-02T08:33:28,390   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/make-consensus.py to 755
2021-03-02T08:33:28,390   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/fasta-lengths.py to 755
2021-03-02T08:33:28,391   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/fasta-sequences.py to 755
2021-03-02T08:33:28,392   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/position-summary.py to 755
2021-03-02T08:33:28,393   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/subset-protein-database.py to 755
2021-03-02T08:33:28,393   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/print-blast-xml-for-derek.py to 755
2021-03-02T08:33:28,394   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.data/scripts/sam-references.py to 755
2021-03-02T08:33:28,486   creating build/bdist.linux-armv7l/wheel/dark_matter-3.2.4.dist-info/WHEEL
2021-03-02T08:33:29,607   Building wheel for dark-matter (setup.py): finished with status 'done'
2021-03-02T08:33:29,617   Created wheel for dark-matter: filename=dark_matter-3.2.4-py3-none-any.whl size=316534 sha256=a96d23d814a5d805bcb9de8d989ac3ef0b2263f0a920fb3b68fad32312c4173f
2021-03-02T08:33:29,618   Stored in directory: /tmp/pip-ephem-wheel-cache-arg3_24u/wheels/85/6f/fd/823457c4e0edda944f8bb81a74595ecbc80b32f65c71c9e514
2021-03-02T08:33:29,650 Successfully built dark-matter
2021-03-02T08:33:29,709 Removed build tracker: '/tmp/pip-req-tracker-qe9w1ngo'