2021-03-07T15:07:44,558 Created temporary directory: /tmp/pip-ephem-wheel-cache-0yzrb937
2021-03-07T15:07:44,561 Created temporary directory: /tmp/pip-req-tracker-40vophzi
2021-03-07T15:07:44,562 Initialized build tracking at /tmp/pip-req-tracker-40vophzi
2021-03-07T15:07:44,562 Created build tracker: /tmp/pip-req-tracker-40vophzi
2021-03-07T15:07:44,562 Entered build tracker: /tmp/pip-req-tracker-40vophzi
2021-03-07T15:07:44,563 Created temporary directory: /tmp/pip-wheel-cyxqqctp
2021-03-07T15:07:44,593 1 location(s) to search for versions of maicos:
2021-03-07T15:07:44,593 * https://pypi.org/simple/maicos/
2021-03-07T15:07:44,594 Fetching project page and analyzing links: https://pypi.org/simple/maicos/
2021-03-07T15:07:44,594 Getting page https://pypi.org/simple/maicos/
2021-03-07T15:07:44,596 Found index url https://pypi.org/simple
2021-03-07T15:07:44,774   Found link https://files.pythonhosted.org/packages/ea/c4/8c22e710d2354fad41121756c965dbb03bb829aaa512655b75fcd3d31286/maicos-0.2.tar.gz#sha256=d71541de31ac6bba4e10772f09dc0a695d0f096800fea9a7efe3daa05ee881be (from https://pypi.org/simple/maicos/) (requires-python:>=3.6), version: 0.2
2021-03-07T15:07:44,775   Found link https://files.pythonhosted.org/packages/b6/dd/ccdcff2804dd1de2b953499290b2e013b01726329b40af02c68b0e014c1c/maicos-0.3.tar.gz#sha256=678ce80efaaa056dc2eb1c576da806ab463ee5a59f0c0a709a565fd72f99c32a (from https://pypi.org/simple/maicos/) (requires-python:>=3.6, <3.9), version: 0.3
2021-03-07T15:07:44,787 Given no hashes to check 1 links for project 'maicos': discarding no candidates
2021-03-07T15:07:44,801 Collecting maicos==0.3
2021-03-07T15:07:44,802   Created temporary directory: /tmp/pip-unpack-a_10crr9
2021-03-07T15:07:44,844   Downloading maicos-0.3.tar.gz (154 kB)
2021-03-07T15:07:44,994   Added maicos==0.3 from https://files.pythonhosted.org/packages/b6/dd/ccdcff2804dd1de2b953499290b2e013b01726329b40af02c68b0e014c1c/maicos-0.3.tar.gz#sha256=678ce80efaaa056dc2eb1c576da806ab463ee5a59f0c0a709a565fd72f99c32a to build tracker '/tmp/pip-req-tracker-40vophzi'
2021-03-07T15:07:44,995     Running setup.py (path:/tmp/pip-wheel-cyxqqctp/maicos_04ad5496c9bd461c87bc87f0e653cfd4/setup.py) egg_info for package maicos
2021-03-07T15:07:44,996     Created temporary directory: /tmp/pip-pip-egg-info-x55jwjes
2021-03-07T15:07:44,996     Running command python setup.py egg_info
2021-03-07T15:15:19,153     Attempting to autodetect OpenMP support... Compiler supports OpenMP
2021-03-07T15:15:19,154     running egg_info
2021-03-07T15:15:19,155     creating /tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info
2021-03-07T15:15:19,156     writing /tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/PKG-INFO
2021-03-07T15:15:19,160     writing dependency_links to /tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/dependency_links.txt
2021-03-07T15:15:19,162     writing entry points to /tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/entry_points.txt
2021-03-07T15:15:19,164     writing requirements to /tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/requires.txt
2021-03-07T15:15:19,165     writing top-level names to /tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/top_level.txt
2021-03-07T15:15:19,167     writing manifest file '/tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/SOURCES.txt'
2021-03-07T15:15:19,338     reading manifest file '/tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/SOURCES.txt'
2021-03-07T15:15:19,340     reading manifest template 'MANIFEST.in'
2021-03-07T15:15:19,454     writing manifest file '/tmp/pip-pip-egg-info-x55jwjes/maicos.egg-info/SOURCES.txt'
2021-03-07T15:15:19,455     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:693: UserWarning: Module numpy was already imported from /usr/local/lib/python3.7/dist-packages/numpy/__init__.py, but /tmp/pip-wheel-cyxqqctp/maicos_04ad5496c9bd461c87bc87f0e653cfd4/.eggs/numpy-1.19.5-py3.7-linux-armv7l.egg is being added to sys.path
2021-03-07T15:15:19,456       pkg_resources.working_set.add(dist, replace=True)
2021-03-07T15:15:19,563   Source in /tmp/pip-wheel-cyxqqctp/maicos_04ad5496c9bd461c87bc87f0e653cfd4 has version 0.3, which satisfies requirement maicos==0.3 from https://files.pythonhosted.org/packages/b6/dd/ccdcff2804dd1de2b953499290b2e013b01726329b40af02c68b0e014c1c/maicos-0.3.tar.gz#sha256=678ce80efaaa056dc2eb1c576da806ab463ee5a59f0c0a709a565fd72f99c32a
2021-03-07T15:15:19,564   Removed maicos==0.3 from https://files.pythonhosted.org/packages/b6/dd/ccdcff2804dd1de2b953499290b2e013b01726329b40af02c68b0e014c1c/maicos-0.3.tar.gz#sha256=678ce80efaaa056dc2eb1c576da806ab463ee5a59f0c0a709a565fd72f99c32a from build tracker '/tmp/pip-req-tracker-40vophzi'
2021-03-07T15:15:19,572 Created temporary directory: /tmp/pip-unpack-obovuwcf
2021-03-07T15:15:19,572 Building wheels for collected packages: maicos
2021-03-07T15:15:19,577   Created temporary directory: /tmp/pip-wheel-q376z_iu
2021-03-07T15:15:19,577   Building wheel for maicos (setup.py): started
2021-03-07T15:15:19,578   Destination directory: /tmp/pip-wheel-q376z_iu
2021-03-07T15:15:19,578   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cyxqqctp/maicos_04ad5496c9bd461c87bc87f0e653cfd4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cyxqqctp/maicos_04ad5496c9bd461c87bc87f0e653cfd4/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-q376z_iu
2021-03-07T15:15:20,986   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2021-03-07T15:15:21,520   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:693: UserWarning: Module numpy was already imported from /usr/local/lib/python3.7/dist-packages/numpy/__init__.py, but /tmp/pip-wheel-cyxqqctp/maicos_04ad5496c9bd461c87bc87f0e653cfd4/.eggs/numpy-1.19.5-py3.7-linux-armv7l.egg is being added to sys.path
2021-03-07T15:15:21,521     pkg_resources.working_set.add(dist, replace=True)
2021-03-07T15:15:21,661   running bdist_wheel
2021-03-07T15:15:21,666   running build
2021-03-07T15:15:21,666   running build_py
2021-03-07T15:15:21,810   creating build
2021-03-07T15:15:21,811   creating build/lib.linux-armv7l-3.7
2021-03-07T15:15:21,812   creating build/lib.linux-armv7l-3.7/maicos
2021-03-07T15:15:21,813   copying maicos/utils.py -> build/lib.linux-armv7l-3.7/maicos
2021-03-07T15:15:21,816   copying maicos/__init__.py -> build/lib.linux-armv7l-3.7/maicos
2021-03-07T15:15:21,818   copying maicos/tables.py -> build/lib.linux-armv7l-3.7/maicos
2021-03-07T15:15:21,821   copying maicos/__main__.py -> build/lib.linux-armv7l-3.7/maicos
2021-03-07T15:15:21,823   copying maicos/arg_completion.py -> build/lib.linux-armv7l-3.7/maicos
2021-03-07T15:15:21,826   copying maicos/decorators.py -> build/lib.linux-armv7l-3.7/maicos
2021-03-07T15:15:21,829   creating build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,830   copying maicos/modules/base.py -> build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,833   copying maicos/modules/__init__.py -> build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,836   copying maicos/modules/density.py -> build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,839   copying maicos/modules/epsilon.py -> build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,843   copying maicos/modules/structure.py -> build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,847   copying maicos/modules/timeseries.py -> build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,850   copying maicos/modules/transport.py -> build/lib.linux-armv7l-3.7/maicos/modules
2021-03-07T15:15:21,852   running egg_info
2021-03-07T15:15:21,855   writing maicos.egg-info/PKG-INFO
2021-03-07T15:15:21,858   writing dependency_links to maicos.egg-info/dependency_links.txt
2021-03-07T15:15:21,860   writing entry points to maicos.egg-info/entry_points.txt
2021-03-07T15:15:21,861   writing requirements to maicos.egg-info/requires.txt
2021-03-07T15:15:21,863   writing top-level names to maicos.egg-info/top_level.txt
2021-03-07T15:15:21,870   reading manifest file 'maicos.egg-info/SOURCES.txt'
2021-03-07T15:15:21,873   reading manifest template 'MANIFEST.in'
2021-03-07T15:15:21,965   writing manifest file 'maicos.egg-info/SOURCES.txt'
2021-03-07T15:15:21,968   creating build/lib.linux-armv7l-3.7/maicos/lib
2021-03-07T15:15:21,969   copying maicos/lib/sfactor.c -> build/lib.linux-armv7l-3.7/maicos/lib
2021-03-07T15:15:21,991   copying maicos/lib/sfactor.pyx -> build/lib.linux-armv7l-3.7/maicos/lib
2021-03-07T15:15:21,993   creating build/lib.linux-armv7l-3.7/maicos/share
2021-03-07T15:15:21,994   copying maicos/share/atomtypes.dat -> build/lib.linux-armv7l-3.7/maicos/share
2021-03-07T15:15:21,997   copying maicos/share/maicos-completion.bash -> build/lib.linux-armv7l-3.7/maicos/share
2021-03-07T15:15:22,000   copying maicos/share/sfactor.dat -> build/lib.linux-armv7l-3.7/maicos/share
2021-03-07T15:15:22,004   running build_ext
2021-03-07T15:15:22,005   building 'maicos.lib.sfactor' extension
2021-03-07T15:15:22,005   creating build/temp.linux-armv7l-3.7
2021-03-07T15:15:22,006   creating build/temp.linux-armv7l-3.7/maicos
2021-03-07T15:15:22,006   creating build/temp.linux-armv7l-3.7/maicos/lib
2021-03-07T15:15:22,007   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c maicos/lib/sfactor.c -o build/temp.linux-armv7l-3.7/maicos/lib/sfactor.o -std=c99 -ffast-math -O3 -funroll-loops -fopenmp
2021-03-07T15:15:22,380   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-03-07T15:15:22,381                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-03-07T15:15:22,381                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-03-07T15:15:22,381                    from maicos/lib/sfactor.c:643:
2021-03-07T15:15:22,381   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-03-07T15:15:22,382    #warning "Using deprecated NumPy API, disable it with " \
2021-03-07T15:15:22,382     ^~~~~~~
2021-03-07T15:15:35,763   maicos/lib/sfactor.c: In function ‘__pyx_pw_6maicos_3lib_7sfactor_1compute_structure_factor’:
2021-03-07T15:15:35,764   maicos/lib/sfactor.c:2838:25: warning: ‘__pyx_v_sin’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-03-07T15:15:35,764                    #pragma omp parallel reduction(+:__pyx_v_cos) reduction(+:__pyx_v_sin) private(__pyx_t_10, __pyx_t_15, __pyx_t_16, __pyx_t_17, __pyx_t_18, __pyx_t_19, __pyx_t_20, __pyx_t_21, __pyx_t_22, __pyx_t_23, __pyx_t_24, __pyx_t_25, __pyx_t_26, __pyx_t_27, __pyx_t_28, __pyx_t_29, __pyx_t_8)
2021-03-07T15:15:35,764                            ^~~
2021-03-07T15:15:35,764   maicos/lib/sfactor.c:2537:10: note: ‘__pyx_v_sin’ was declared here
2021-03-07T15:15:35,764      double __pyx_v_sin;
2021-03-07T15:15:35,765             ^~~~~~~~~~~
2021-03-07T15:15:35,765   maicos/lib/sfactor.c:2838:25: warning: ‘__pyx_v_cos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-03-07T15:15:35,765                    #pragma omp parallel reduction(+:__pyx_v_cos) reduction(+:__pyx_v_sin) private(__pyx_t_10, __pyx_t_15, __pyx_t_16, __pyx_t_17, __pyx_t_18, __pyx_t_19, __pyx_t_20, __pyx_t_21, __pyx_t_22, __pyx_t_23, __pyx_t_24, __pyx_t_25, __pyx_t_26, __pyx_t_27, __pyx_t_28, __pyx_t_29, __pyx_t_8)
2021-03-07T15:15:35,765                            ^~~
2021-03-07T15:15:35,765   maicos/lib/sfactor.c:2538:10: note: ‘__pyx_v_cos’ was declared here
2021-03-07T15:15:35,766      double __pyx_v_cos;
2021-03-07T15:15:35,766             ^~~~~~~~~~~
2021-03-07T15:15:38,072   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/maicos/lib/sfactor.o -lm -o build/lib.linux-armv7l-3.7/maicos/lib/sfactor.cpython-37m-arm-linux-gnueabihf.so -fopenmp
2021-03-07T15:15:38,310   installing to build/bdist.linux-armv7l/wheel
2021-03-07T15:15:38,310   running install
2021-03-07T15:15:38,311   running install_lib
2021-03-07T15:15:38,315   creating build/bdist.linux-armv7l
2021-03-07T15:15:38,315   creating build/bdist.linux-armv7l/wheel
2021-03-07T15:15:38,317   creating build/bdist.linux-armv7l/wheel/maicos
2021-03-07T15:15:38,318   copying build/lib.linux-armv7l-3.7/maicos/utils.py -> build/bdist.linux-armv7l/wheel/maicos
2021-03-07T15:15:38,321   copying build/lib.linux-armv7l-3.7/maicos/__init__.py -> build/bdist.linux-armv7l/wheel/maicos
2021-03-07T15:15:38,324   copying build/lib.linux-armv7l-3.7/maicos/tables.py -> build/bdist.linux-armv7l/wheel/maicos
2021-03-07T15:15:38,327   copying build/lib.linux-armv7l-3.7/maicos/__main__.py -> build/bdist.linux-armv7l/wheel/maicos
2021-03-07T15:15:38,331   creating build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,332   copying build/lib.linux-armv7l-3.7/maicos/modules/base.py -> build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,336   copying build/lib.linux-armv7l-3.7/maicos/modules/__init__.py -> build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,339   copying build/lib.linux-armv7l-3.7/maicos/modules/density.py -> build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,342   copying build/lib.linux-armv7l-3.7/maicos/modules/epsilon.py -> build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,347   copying build/lib.linux-armv7l-3.7/maicos/modules/structure.py -> build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,350   copying build/lib.linux-armv7l-3.7/maicos/modules/timeseries.py -> build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,353   copying build/lib.linux-armv7l-3.7/maicos/modules/transport.py -> build/bdist.linux-armv7l/wheel/maicos/modules
2021-03-07T15:15:38,357   creating build/bdist.linux-armv7l/wheel/maicos/share
2021-03-07T15:15:38,358   copying build/lib.linux-armv7l-3.7/maicos/share/atomtypes.dat -> build/bdist.linux-armv7l/wheel/maicos/share
2021-03-07T15:15:38,361   copying build/lib.linux-armv7l-3.7/maicos/share/maicos-completion.bash -> build/bdist.linux-armv7l/wheel/maicos/share
2021-03-07T15:15:38,364   copying build/lib.linux-armv7l-3.7/maicos/share/sfactor.dat -> build/bdist.linux-armv7l/wheel/maicos/share
2021-03-07T15:15:38,367   creating build/bdist.linux-armv7l/wheel/maicos/lib
2021-03-07T15:15:38,368   copying build/lib.linux-armv7l-3.7/maicos/lib/sfactor.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/maicos/lib
2021-03-07T15:15:38,393   copying build/lib.linux-armv7l-3.7/maicos/lib/sfactor.pyx -> build/bdist.linux-armv7l/wheel/maicos/lib
2021-03-07T15:15:38,395   copying build/lib.linux-armv7l-3.7/maicos/lib/sfactor.c -> build/bdist.linux-armv7l/wheel/maicos/lib
2021-03-07T15:15:38,454   copying build/lib.linux-armv7l-3.7/maicos/arg_completion.py -> build/bdist.linux-armv7l/wheel/maicos
2021-03-07T15:15:38,460   copying build/lib.linux-armv7l-3.7/maicos/decorators.py -> build/bdist.linux-armv7l/wheel/maicos
2021-03-07T15:15:38,463   running install_egg_info
2021-03-07T15:15:38,480   Copying maicos.egg-info to build/bdist.linux-armv7l/wheel/maicos-0.3-py3.7.egg-info
2021-03-07T15:15:38,501   running install_scripts
2021-03-07T15:15:38,601   creating build/bdist.linux-armv7l/wheel/maicos-0.3.dist-info/WHEEL
2021-03-07T15:15:38,604   creating '/tmp/pip-wheel-q376z_iu/maicos-0.3-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-03-07T15:15:38,608   adding 'maicos/__init__.py'
2021-03-07T15:15:38,610   adding 'maicos/__main__.py'
2021-03-07T15:15:38,612   adding 'maicos/arg_completion.py'
2021-03-07T15:15:38,614   adding 'maicos/decorators.py'
2021-03-07T15:15:38,616   adding 'maicos/tables.py'
2021-03-07T15:15:38,618   adding 'maicos/utils.py'
2021-03-07T15:15:38,693   adding 'maicos/lib/sfactor.c'
2021-03-07T15:15:38,880   adding 'maicos/lib/sfactor.cpython-37m-arm-linux-gnueabihf.so'
2021-03-07T15:15:38,888   adding 'maicos/lib/sfactor.pyx'
2021-03-07T15:15:38,890   adding 'maicos/modules/__init__.py'
2021-03-07T15:15:38,892   adding 'maicos/modules/base.py'
2021-03-07T15:15:38,895   adding 'maicos/modules/density.py'
2021-03-07T15:15:38,901   adding 'maicos/modules/epsilon.py'
2021-03-07T15:15:38,904   adding 'maicos/modules/structure.py'
2021-03-07T15:15:38,906   adding 'maicos/modules/timeseries.py'
2021-03-07T15:15:38,909   adding 'maicos/modules/transport.py'
2021-03-07T15:15:38,911   adding 'maicos/share/atomtypes.dat'
2021-03-07T15:15:38,913   adding 'maicos/share/maicos-completion.bash'
2021-03-07T15:15:38,916   adding 'maicos/share/sfactor.dat'
2021-03-07T15:15:38,919   adding 'maicos-0.3.dist-info/METADATA'
2021-03-07T15:15:38,920   adding 'maicos-0.3.dist-info/WHEEL'
2021-03-07T15:15:38,922   adding 'maicos-0.3.dist-info/entry_points.txt'
2021-03-07T15:15:38,923   adding 'maicos-0.3.dist-info/top_level.txt'
2021-03-07T15:15:38,924   adding 'maicos-0.3.dist-info/RECORD'
2021-03-07T15:15:38,934   removing build/bdist.linux-armv7l/wheel
2021-03-07T15:15:39,065   Building wheel for maicos (setup.py): finished with status 'done'
2021-03-07T15:15:39,073   Created wheel for maicos: filename=maicos-0.3-cp37-cp37m-linux_armv7l.whl size=507096 sha256=9efc65d2e43f3dea6d588c9e2900f908a050fc1ad93d96396b461451231774d1
2021-03-07T15:15:39,074   Stored in directory: /tmp/pip-ephem-wheel-cache-0yzrb937/wheels/4b/c8/8d/b5069fb44714ce4a1104e994913c016b23438e6660726fdb8f
2021-03-07T15:15:39,083 Successfully built maicos
2021-03-07T15:15:39,105 Removed build tracker: '/tmp/pip-req-tracker-40vophzi'