2021-03-16T00:29:26,639 Created temporary directory: /tmp/pip-ephem-wheel-cache-gdls2cfp
2021-03-16T00:29:26,642 Created temporary directory: /tmp/pip-req-tracker-o553id0_
2021-03-16T00:29:26,642 Initialized build tracking at /tmp/pip-req-tracker-o553id0_
2021-03-16T00:29:26,642 Created build tracker: /tmp/pip-req-tracker-o553id0_
2021-03-16T00:29:26,642 Entered build tracker: /tmp/pip-req-tracker-o553id0_
2021-03-16T00:29:26,643 Created temporary directory: /tmp/pip-wheel-8a_0mm1l
2021-03-16T00:29:26,672 1 location(s) to search for versions of isambard:
2021-03-16T00:29:26,672 * https://pypi.org/simple/isambard/
2021-03-16T00:29:26,672 Fetching project page and analyzing links: https://pypi.org/simple/isambard/
2021-03-16T00:29:26,672 Getting page https://pypi.org/simple/isambard/
2021-03-16T00:29:26,674 Found index url https://pypi.org/simple
2021-03-16T00:29:26,762   Found link https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3 (from https://pypi.org/simple/isambard/), version: 2.0.1
2021-03-16T00:29:26,762   Found link https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 (from https://pypi.org/simple/isambard/), version: 2.2.0
2021-03-16T00:29:26,763   Found link https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c (from https://pypi.org/simple/isambard/), version: 2.3.1
2021-03-16T00:29:26,776 Given no hashes to check 1 links for project 'isambard': discarding no candidates
2021-03-16T00:29:26,792 Collecting isambard==2.3.1
2021-03-16T00:29:26,793   Created temporary directory: /tmp/pip-unpack-hqxicpo4
2021-03-16T00:29:26,836   Downloading ISAMBARD-2.3.1.tar.gz (370 kB)
2021-03-16T00:29:27,078   Added isambard==2.3.1 from https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c to build tracker '/tmp/pip-req-tracker-o553id0_'
2021-03-16T00:29:27,079     Running setup.py (path:/tmp/pip-wheel-8a_0mm1l/isambard_e0b5fe7bc1054eb0839db58bdb994647/setup.py) egg_info for package isambard
2021-03-16T00:29:27,080     Created temporary directory: /tmp/pip-pip-egg-info-j4ow_on8
2021-03-16T00:29:27,080     Running command python setup.py egg_info
2021-03-16T00:29:28,729     running egg_info
2021-03-16T00:29:28,731     creating /tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info
2021-03-16T00:29:28,732     writing /tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info/PKG-INFO
2021-03-16T00:29:28,735     writing dependency_links to /tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info/dependency_links.txt
2021-03-16T00:29:28,738     writing requirements to /tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info/requires.txt
2021-03-16T00:29:28,739     writing top-level names to /tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info/top_level.txt
2021-03-16T00:29:28,741     writing manifest file '/tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info/SOURCES.txt'
2021-03-16T00:29:28,882     reading manifest file '/tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info/SOURCES.txt'
2021-03-16T00:29:28,884     reading manifest template 'MANIFEST.in'
2021-03-16T00:29:28,922     writing manifest file '/tmp/pip-pip-egg-info-j4ow_on8/ISAMBARD.egg-info/SOURCES.txt'
2021-03-16T00:29:29,016   Source in /tmp/pip-wheel-8a_0mm1l/isambard_e0b5fe7bc1054eb0839db58bdb994647 has version 2.3.1, which satisfies requirement isambard==2.3.1 from https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c
2021-03-16T00:29:29,018   Removed isambard==2.3.1 from https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c from build tracker '/tmp/pip-req-tracker-o553id0_'
2021-03-16T00:29:29,023 Created temporary directory: /tmp/pip-unpack-m_ojor6z
2021-03-16T00:29:29,024 Building wheels for collected packages: isambard
2021-03-16T00:29:29,029   Created temporary directory: /tmp/pip-wheel-_b_4on4e
2021-03-16T00:29:29,029   Building wheel for isambard (setup.py): started
2021-03-16T00:29:29,029   Destination directory: /tmp/pip-wheel-_b_4on4e
2021-03-16T00:29:29,030   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8a_0mm1l/isambard_e0b5fe7bc1054eb0839db58bdb994647/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8a_0mm1l/isambard_e0b5fe7bc1054eb0839db58bdb994647/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_b_4on4e
2021-03-16T00:29:30,650   running bdist_wheel
2021-03-16T00:29:30,655   running build
2021-03-16T00:29:30,655   running build_py
2021-03-16T00:29:30,807   creating build
2021-03-16T00:29:30,808   creating build/lib.linux-armv7l-3.7
2021-03-16T00:29:30,809   creating build/lib.linux-armv7l-3.7/isambard
2021-03-16T00:29:30,810   copying src/isambard/__init__.py -> build/lib.linux-armv7l-3.7/isambard
2021-03-16T00:29:30,813   creating build/lib.linux-armv7l-3.7/isambard/evaluation
2021-03-16T00:29:30,814   copying src/isambard/evaluation/packing_density.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2021-03-16T00:29:30,816   copying src/isambard/evaluation/dssp.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2021-03-16T00:29:30,819   copying src/isambard/evaluation/contact_order.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2021-03-16T00:29:30,821   copying src/isambard/evaluation/pacc.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2021-03-16T00:29:30,824   copying src/isambard/evaluation/__init__.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2021-03-16T00:29:30,826   copying src/isambard/evaluation/hydrophobic_fitness.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2021-03-16T00:29:30,830   creating build/lib.linux-armv7l-3.7/isambard/modelling
2021-03-16T00:29:30,831   copying src/isambard/modelling/non_canonical.py -> build/lib.linux-armv7l-3.7/isambard/modelling
2021-03-16T00:29:30,833   copying src/isambard/modelling/__init__.py -> build/lib.linux-armv7l-3.7/isambard/modelling
2021-03-16T00:29:30,836   copying src/isambard/modelling/scwrl.py -> build/lib.linux-armv7l-3.7/isambard/modelling
2021-03-16T00:29:30,840   creating build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:30,841   copying src/isambard/specifications/nucleic_acid_duplex.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:30,844   copying src/isambard/specifications/coiledcoil.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:30,847   copying src/isambard/specifications/nucleic_acid_strand.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:30,850   copying src/isambard/specifications/__init__.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:30,852   copying src/isambard/specifications/solenoid.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:30,855   copying src/isambard/specifications/helix.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:30,860   creating build/lib.linux-armv7l-3.7/isambard/optimisation
2021-03-16T00:29:30,860   copying src/isambard/optimisation/mmc_optimizer.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2021-03-16T00:29:30,864   copying src/isambard/optimisation/base_evo_opt.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2021-03-16T00:29:30,867   copying src/isambard/optimisation/evo_optimizers.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2021-03-16T00:29:30,870   copying src/isambard/optimisation/__init__.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2021-03-16T00:29:30,872   running egg_info
2021-03-16T00:29:30,891   writing src/ISAMBARD.egg-info/PKG-INFO
2021-03-16T00:29:30,894   writing dependency_links to src/ISAMBARD.egg-info/dependency_links.txt
2021-03-16T00:29:30,897   writing requirements to src/ISAMBARD.egg-info/requires.txt
2021-03-16T00:29:30,899   writing top-level names to src/ISAMBARD.egg-info/top_level.txt
2021-03-16T00:29:30,908   reading manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-03-16T00:29:30,911   reading manifest template 'MANIFEST.in'
2021-03-16T00:29:30,947   writing manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-03-16T00:29:30,952   creating build/lib.linux-armv7l-3.7/isambard/__pycache__
2021-03-16T00:29:30,953   copying src/isambard/__pycache__/__init__.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/__pycache__
2021-03-16T00:29:30,957   creating build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2021-03-16T00:29:30,958   copying src/isambard/evaluation/__pycache__/__init__.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2021-03-16T00:29:30,961   copying src/isambard/evaluation/__pycache__/contact_order.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2021-03-16T00:29:30,964   copying src/isambard/evaluation/__pycache__/dssp.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2021-03-16T00:29:30,967   copying src/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2021-03-16T00:29:30,970   copying src/isambard/evaluation/__pycache__/pacc.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2021-03-16T00:29:30,973   copying src/isambard/evaluation/__pycache__/packing_density.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2021-03-16T00:29:30,976   creating build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2021-03-16T00:29:30,977   copying src/isambard/modelling/__pycache__/__init__.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2021-03-16T00:29:30,980   copying src/isambard/modelling/__pycache__/create_loop_database.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2021-03-16T00:29:30,984   copying src/isambard/modelling/__pycache__/extract_loop_data.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2021-03-16T00:29:30,988   copying src/isambard/modelling/__pycache__/non_canonical.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2021-03-16T00:29:30,991   copying src/isambard/modelling/__pycache__/scwrl.cpython-37.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2021-03-16T00:29:30,994   creating build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals
2021-03-16T00:29:30,995   copying src/isambard/modelling/reference_ampals/README.md -> build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals
2021-03-16T00:29:30,998   creating build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-03-16T00:29:30,999   copying src/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-03-16T00:29:31,002   copying src/isambard/specifications/ta_polypeptide.c -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:31,018   copying src/isambard/specifications/ta_polypeptide.cpython-37m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:31,041   copying src/isambard/specifications/ta_polypeptide.pyx -> build/lib.linux-armv7l-3.7/isambard/specifications
2021-03-16T00:29:31,048   running build_ext
2021-03-16T00:29:31,053   building 'isambard.specifications.ta_polypeptide' extension
2021-03-16T00:29:31,054   creating build/temp.linux-armv7l-3.7
2021-03-16T00:29:31,055   creating build/temp.linux-armv7l-3.7/src
2021-03-16T00:29:31,056   creating build/temp.linux-armv7l-3.7/src/isambard
2021-03-16T00:29:31,057   creating build/temp.linux-armv7l-3.7/src/isambard/specifications
2021-03-16T00:29:31,058   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/isambard/specifications/ta_polypeptide.c -o build/temp.linux-armv7l-3.7/src/isambard/specifications/ta_polypeptide.o
2021-03-16T00:29:45,290   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/isambard/specifications/ta_polypeptide.o -o build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.cpython-37m-arm-linux-gnueabihf.so
2021-03-16T00:29:45,455   installing to build/bdist.linux-armv7l/wheel
2021-03-16T00:29:45,455   running install
2021-03-16T00:29:45,457   running install_lib
2021-03-16T00:29:45,461   creating build/bdist.linux-armv7l
2021-03-16T00:29:45,462   creating build/bdist.linux-armv7l/wheel
2021-03-16T00:29:45,472   creating build/bdist.linux-armv7l/wheel/isambard
2021-03-16T00:29:45,474   creating build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-03-16T00:29:45,476   copying build/lib.linux-armv7l-3.7/isambard/evaluation/packing_density.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-03-16T00:29:45,479   copying build/lib.linux-armv7l-3.7/isambard/evaluation/dssp.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-03-16T00:29:45,482   copying build/lib.linux-armv7l-3.7/isambard/evaluation/contact_order.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-03-16T00:29:45,485   creating build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-03-16T00:29:45,487   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/dssp.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-03-16T00:29:45,490   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/contact_order.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-03-16T00:29:45,493   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/packing_density.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-03-16T00:29:45,497   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-03-16T00:29:45,500   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-03-16T00:29:45,502   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/pacc.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-03-16T00:29:45,505   copying build/lib.linux-armv7l-3.7/isambard/evaluation/pacc.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-03-16T00:29:45,509   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-03-16T00:29:45,511   copying build/lib.linux-armv7l-3.7/isambard/evaluation/hydrophobic_fitness.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-03-16T00:29:45,515   creating build/bdist.linux-armv7l/wheel/isambard/modelling
2021-03-16T00:29:45,517   creating build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-03-16T00:29:45,519   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/extract_loop_data.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-03-16T00:29:45,522   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/create_loop_database.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-03-16T00:29:45,525   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/non_canonical.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-03-16T00:29:45,528   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-03-16T00:29:45,530   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/scwrl.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-03-16T00:29:45,534   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-03-16T00:29:45,535   copying build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/README.md -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-03-16T00:29:45,539   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-03-16T00:29:45,540   copying build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-03-16T00:29:45,543   copying build/lib.linux-armv7l-3.7/isambard/modelling/non_canonical.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-03-16T00:29:45,545   copying build/lib.linux-armv7l-3.7/isambard/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-03-16T00:29:45,548   copying build/lib.linux-armv7l-3.7/isambard/modelling/scwrl.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-03-16T00:29:45,552   creating build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-03-16T00:29:45,553   copying build/lib.linux-armv7l-3.7/isambard/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-03-16T00:29:45,557   creating build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,558   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,581   copying build/lib.linux-armv7l-3.7/isambard/specifications/nucleic_acid_duplex.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,583   copying build/lib.linux-armv7l-3.7/isambard/specifications/coiledcoil.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,585   copying build/lib.linux-armv7l-3.7/isambard/specifications/nucleic_acid_strand.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,588   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,608   copying build/lib.linux-armv7l-3.7/isambard/specifications/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,611   copying build/lib.linux-armv7l-3.7/isambard/specifications/solenoid.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,613   copying build/lib.linux-armv7l-3.7/isambard/specifications/helix.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,616   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.pyx -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,618   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.c -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-03-16T00:29:45,636   creating build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-03-16T00:29:45,637   copying build/lib.linux-armv7l-3.7/isambard/optimisation/mmc_optimizer.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-03-16T00:29:45,640   copying build/lib.linux-armv7l-3.7/isambard/optimisation/base_evo_opt.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-03-16T00:29:45,643   copying build/lib.linux-armv7l-3.7/isambard/optimisation/evo_optimizers.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-03-16T00:29:45,645   copying build/lib.linux-armv7l-3.7/isambard/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-03-16T00:29:45,648   copying build/lib.linux-armv7l-3.7/isambard/__init__.py -> build/bdist.linux-armv7l/wheel/isambard
2021-03-16T00:29:45,649   running install_egg_info
2021-03-16T00:29:45,659   Copying src/ISAMBARD.egg-info to build/bdist.linux-armv7l/wheel/ISAMBARD-2.3.1-py3.7.egg-info
2021-03-16T00:29:45,675   running install_scripts
2021-03-16T00:29:45,726   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-03-16T00:29:45,732   creating build/bdist.linux-armv7l/wheel/ISAMBARD-2.3.1.dist-info/WHEEL
2021-03-16T00:29:45,735   creating '/tmp/pip-wheel-_b_4on4e/ISAMBARD-2.3.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-03-16T00:29:45,739   adding 'isambard/__init__.py'
2021-03-16T00:29:45,741   adding 'isambard/__pycache__/__init__.cpython-37.pyc'
2021-03-16T00:29:45,743   adding 'isambard/evaluation/__init__.py'
2021-03-16T00:29:45,745   adding 'isambard/evaluation/contact_order.py'
2021-03-16T00:29:45,747   adding 'isambard/evaluation/dssp.py'
2021-03-16T00:29:45,749   adding 'isambard/evaluation/hydrophobic_fitness.py'
2021-03-16T00:29:45,750   adding 'isambard/evaluation/pacc.py'
2021-03-16T00:29:45,752   adding 'isambard/evaluation/packing_density.py'
2021-03-16T00:29:45,754   adding 'isambard/evaluation/__pycache__/__init__.cpython-37.pyc'
2021-03-16T00:29:45,756   adding 'isambard/evaluation/__pycache__/contact_order.cpython-37.pyc'
2021-03-16T00:29:45,758   adding 'isambard/evaluation/__pycache__/dssp.cpython-37.pyc'
2021-03-16T00:29:45,760   adding 'isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-37.pyc'
2021-03-16T00:29:45,762   adding 'isambard/evaluation/__pycache__/pacc.cpython-37.pyc'
2021-03-16T00:29:45,763   adding 'isambard/evaluation/__pycache__/packing_density.cpython-37.pyc'
2021-03-16T00:29:45,765   adding 'isambard/modelling/__init__.py'
2021-03-16T00:29:45,766   adding 'isambard/modelling/non_canonical.py'
2021-03-16T00:29:45,768   adding 'isambard/modelling/scwrl.py'
2021-03-16T00:29:45,770   adding 'isambard/modelling/__pycache__/__init__.cpython-37.pyc'
2021-03-16T00:29:45,772   adding 'isambard/modelling/__pycache__/create_loop_database.cpython-37.pyc'
2021-03-16T00:29:45,775   adding 'isambard/modelling/__pycache__/extract_loop_data.cpython-37.pyc'
2021-03-16T00:29:45,776   adding 'isambard/modelling/__pycache__/non_canonical.cpython-37.pyc'
2021-03-16T00:29:45,778   adding 'isambard/modelling/__pycache__/scwrl.cpython-37.pyc'
2021-03-16T00:29:45,780   adding 'isambard/modelling/reference_ampals/README.md'
2021-03-16T00:29:45,782   adding 'isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle'
2021-03-16T00:29:45,784   adding 'isambard/optimisation/__init__.py'
2021-03-16T00:29:45,787   adding 'isambard/optimisation/base_evo_opt.py'
2021-03-16T00:29:45,790   adding 'isambard/optimisation/evo_optimizers.py'
2021-03-16T00:29:45,792   adding 'isambard/optimisation/mmc_optimizer.py'
2021-03-16T00:29:45,794   adding 'isambard/specifications/__init__.py'
2021-03-16T00:29:45,796   adding 'isambard/specifications/coiledcoil.py'
2021-03-16T00:29:45,799   adding 'isambard/specifications/helix.py'
2021-03-16T00:29:45,801   adding 'isambard/specifications/nucleic_acid_duplex.py'
2021-03-16T00:29:45,803   adding 'isambard/specifications/nucleic_acid_strand.py'
2021-03-16T00:29:45,804   adding 'isambard/specifications/solenoid.py'
2021-03-16T00:29:45,846   adding 'isambard/specifications/ta_polypeptide.c'
2021-03-16T00:29:45,978   adding 'isambard/specifications/ta_polypeptide.cpython-37m-arm-linux-gnueabihf.so'
2021-03-16T00:29:46,112   adding 'isambard/specifications/ta_polypeptide.cpython-37m-x86_64-linux-gnu.so'
2021-03-16T00:29:46,120   adding 'isambard/specifications/ta_polypeptide.pyx'
2021-03-16T00:29:46,121   adding 'ISAMBARD-2.3.1.dist-info/LICENSE.txt'
2021-03-16T00:29:46,122   adding 'ISAMBARD-2.3.1.dist-info/METADATA'
2021-03-16T00:29:46,124   adding 'ISAMBARD-2.3.1.dist-info/WHEEL'
2021-03-16T00:29:46,124   adding 'ISAMBARD-2.3.1.dist-info/top_level.txt'
2021-03-16T00:29:46,125   adding 'ISAMBARD-2.3.1.dist-info/RECORD'
2021-03-16T00:29:46,137   removing build/bdist.linux-armv7l/wheel
2021-03-16T00:29:46,261   Building wheel for isambard (setup.py): finished with status 'done'
2021-03-16T00:29:46,270   Created wheel for isambard: filename=ISAMBARD-2.3.1-cp37-cp37m-linux_armv7l.whl size=625644 sha256=efae9efaebdc3a20e5d63f7004a92e689f3e6e5836be027bc95d82dfc3a96931
2021-03-16T00:29:46,270   Stored in directory: /tmp/pip-ephem-wheel-cache-gdls2cfp/wheels/c7/96/58/0ceacc4a6ef963579929bc19b1e27fcd797dafe51c5f9ee9c6
2021-03-16T00:29:46,281 Successfully built isambard
2021-03-16T00:29:46,312 Removed build tracker: '/tmp/pip-req-tracker-o553id0_'