2021-03-16T04:41:09,643 Created temporary directory: /tmp/pip-ephem-wheel-cache-yqi8gzv_
2021-03-16T04:41:09,646 Created temporary directory: /tmp/pip-req-tracker-gjmik3s2
2021-03-16T04:41:09,647 Initialized build tracking at /tmp/pip-req-tracker-gjmik3s2
2021-03-16T04:41:09,647 Created build tracker: /tmp/pip-req-tracker-gjmik3s2
2021-03-16T04:41:09,647 Entered build tracker: /tmp/pip-req-tracker-gjmik3s2
2021-03-16T04:41:09,648 Created temporary directory: /tmp/pip-wheel-7p5opb1z
2021-03-16T04:41:09,677 1 location(s) to search for versions of rdkit-to-params:
2021-03-16T04:41:09,677 * https://pypi.org/simple/rdkit-to-params/
2021-03-16T04:41:09,677 Fetching project page and analyzing links: https://pypi.org/simple/rdkit-to-params/
2021-03-16T04:41:09,677 Getting page https://pypi.org/simple/rdkit-to-params/
2021-03-16T04:41:09,679 Found index url https://pypi.org/simple
2021-03-16T04:41:09,773   Found link https://files.pythonhosted.org/packages/ef/e8/7a8a812f8d2954b8acdb661bcc9ee5a9d67dae96f96a66d75de2e90282d3/rdkit_to_params-1.tar.gz#sha256=56b7e26a5622a7ac90e54b8a3f4fab79cc8bb63b102aafb3f8c17bcf26df2df3 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1
2021-03-16T04:41:09,773   Found link https://files.pythonhosted.org/packages/54/ce/55e4c99a7500a7db8e785ee282208e50ee8dc541089185144622c9cecdcc/rdkit_to_params-1.0.1.tar.gz#sha256=d11f52ee51e9f79cf3befa26a9669fe7c99be41fff8c654293e5a63136b844f0 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.0.1
2021-03-16T04:41:09,774   Found link https://files.pythonhosted.org/packages/14/06/f2f72e757eb7deea040c09abef0173a5e6f1023de515afee19d060b9a5f1/rdkit_to_params-1.0.2.tar.gz#sha256=5e169dd2a511f6d4a6747b46010b0d1a165d1ee5a34dd16614b87289d0d344e5 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.0.2
2021-03-16T04:41:09,774   Found link https://files.pythonhosted.org/packages/cd/23/11617c465b9f3dc6ca9f52356ff4ac3e2f80211800b4205b8123a68a7f73/rdkit_to_params-1.0.4.tar.gz#sha256=74031df79149b4069dc924aa73df9e62dba77d7200473ad02c320c2cfd572aa5 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.0.4
2021-03-16T04:41:09,775   Found link https://files.pythonhosted.org/packages/53/71/fa36800525e407ac79c355f6e97fefdb808964a7df1e43a088d396654c19/rdkit_to_params-1.0.5.tar.gz#sha256=39461952a6c30a27a23b57a99ca389e4b28d02a53e29d60ad3e9a86395965b3a (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.0.5
2021-03-16T04:41:09,776   Found link https://files.pythonhosted.org/packages/45/0b/867d72723c27a00cc7f330417d6f7268c777b8795bd946fc89786a0f39b0/rdkit_to_params-1.1.0.tar.gz#sha256=c182be58feb386ccb242ccfea7910d18ef6efefbf682c3ecc85088b2c053ba91 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.0
2021-03-16T04:41:09,776   Found link https://files.pythonhosted.org/packages/5b/52/a15ce15be2ad2bd3606c4d9cc0055261cd7eafd098cf9a31dee9f931290a/rdkit_to_params-1.1.1.tar.gz#sha256=4b3a7e70b33bdfc7994cfad00199f794e38f6c9cf88d82ceb78eddf1f2dace9d (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.1
2021-03-16T04:41:09,777   Found link https://files.pythonhosted.org/packages/1d/2b/97d12fe38813b96f303f04ed4e2e77f5ee540ad683ff79a21c822c047298/rdkit_to_params-1.1.2.tar.gz#sha256=1967c3716553dd6a34ae8805adc65cbd49646ad28b9386dff094b0dd824283ba (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.2
2021-03-16T04:41:09,777   Found link https://files.pythonhosted.org/packages/cf/11/4a451d52b8540a19ae08f28cbec4db146f4d11760133163a94808498f433/rdkit_to_params-1.1.3.tar.gz#sha256=5cdd2f3f7f0751bd2065756ac36147254ca6d87b835828a1f7e5bad1500d7450 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.3
2021-03-16T04:41:09,778   Found link https://files.pythonhosted.org/packages/1f/86/5cdd42d226f7f8dafa43fc9f891a39f8a1689648cfdf0b3653f9fea4c9e9/rdkit_to_params-1.1.4b0.tar.gz#sha256=c1b4c083274f84ff5394d17728cd409fa87418618fdf4c146c47e2947f9c7be7 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.4b0
2021-03-16T04:41:09,778   Found link https://files.pythonhosted.org/packages/cd/9d/b405411dd2b049a635c2629fd62cc23a5b881bf85db16557d8bd02a85f8a/rdkit_to_params-1.1.4.tar.gz#sha256=173a7a029628cccba4ccd041b60dd8144dbc884fd9430f7ffb64a5153ad2531d (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.4
2021-03-16T04:41:09,779   Found link https://files.pythonhosted.org/packages/5a/ca/cc51bc1b2d9311c11316ee089825a4183e89dcecc489c1a48c19910c4acd/rdkit_to_params-1.1.5b0.tar.gz#sha256=0cf596da6296d15c9fd3725e0d77e4563c4070913c335e58e8bdf13a5857d5e5 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.5b0
2021-03-16T04:41:09,779   Found link https://files.pythonhosted.org/packages/6e/7d/0ad2b20f89b42b7fb4799b474cff2000529df5b64fac11581103b293c899/rdkit_to_params-1.1.5.tar.gz#sha256=1610c7c8f44d6eb028baeebbc028cf96a3262c5f344262713820b1eb1a7d5d43 (from https://pypi.org/simple/rdkit-to-params/) (requires-python:>3.6), version: 1.1.5
2021-03-16T04:41:09,795 Given no hashes to check 1 links for project 'rdkit-to-params': discarding no candidates
2021-03-16T04:41:09,810 Collecting rdkit-to-params==1.1.5b0
2021-03-16T04:41:09,811   Created temporary directory: /tmp/pip-unpack-lf8kf8dx
2021-03-16T04:41:09,985   Downloading rdkit_to_params-1.1.5b0.tar.gz (41 kB)
2021-03-16T04:41:10,072   Added rdkit-to-params==1.1.5b0 from https://files.pythonhosted.org/packages/5a/ca/cc51bc1b2d9311c11316ee089825a4183e89dcecc489c1a48c19910c4acd/rdkit_to_params-1.1.5b0.tar.gz#sha256=0cf596da6296d15c9fd3725e0d77e4563c4070913c335e58e8bdf13a5857d5e5 to build tracker '/tmp/pip-req-tracker-gjmik3s2'
2021-03-16T04:41:10,073     Running setup.py (path:/tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5/setup.py) egg_info for package rdkit-to-params
2021-03-16T04:41:10,074     Created temporary directory: /tmp/pip-pip-egg-info-f9292o_j
2021-03-16T04:41:10,074     Running command python setup.py egg_info
2021-03-16T04:41:11,024     running egg_info
2021-03-16T04:41:11,026     creating /tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info
2021-03-16T04:41:11,027     writing /tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info/PKG-INFO
2021-03-16T04:41:11,030     writing dependency_links to /tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info/dependency_links.txt
2021-03-16T04:41:11,032     writing entry points to /tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info/entry_points.txt
2021-03-16T04:41:11,034     writing top-level names to /tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info/top_level.txt
2021-03-16T04:41:11,036     writing manifest file '/tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info/SOURCES.txt'
2021-03-16T04:41:11,175     reading manifest file '/tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info/SOURCES.txt'
2021-03-16T04:41:11,179     writing manifest file '/tmp/pip-pip-egg-info-f9292o_j/rdkit_to_params.egg-info/SOURCES.txt'
2021-03-16T04:41:11,180     /tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5/setup.py:29: UserWarning: Albeit optional, a lot of this code relies on rdkit which cannot be pip installed.To install try either conda install -c conda-forge rdkit or sudo apt-get/brew install python3-rdkit or visit rdkit documentation.
2021-03-16T04:41:11,181       'conda install -c conda-forge rdkit or ' +
2021-03-16T04:41:11,181     /tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5/setup.py:33: UserWarning: The minimisation part of this code uses pyrosetta, which has to be downloaded from the Rosetta software site due to licencing. Without it only the classes Monster and Rectifier will work
2021-03-16T04:41:11,181       warn('The minimisation part of this code uses pyrosetta, which has to be downloaded from ' +
2021-03-16T04:41:11,181     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:461: UserWarning: Normalizing '1.1.5b' to '1.1.5b0'
2021-03-16T04:41:11,182       warnings.warn(tmpl.format(**locals()))
2021-03-16T04:41:11,241   Source in /tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5 has version 1.1.5b0, which satisfies requirement rdkit-to-params==1.1.5b0 from https://files.pythonhosted.org/packages/5a/ca/cc51bc1b2d9311c11316ee089825a4183e89dcecc489c1a48c19910c4acd/rdkit_to_params-1.1.5b0.tar.gz#sha256=0cf596da6296d15c9fd3725e0d77e4563c4070913c335e58e8bdf13a5857d5e5
2021-03-16T04:41:11,242   Removed rdkit-to-params==1.1.5b0 from https://files.pythonhosted.org/packages/5a/ca/cc51bc1b2d9311c11316ee089825a4183e89dcecc489c1a48c19910c4acd/rdkit_to_params-1.1.5b0.tar.gz#sha256=0cf596da6296d15c9fd3725e0d77e4563c4070913c335e58e8bdf13a5857d5e5 from build tracker '/tmp/pip-req-tracker-gjmik3s2'
2021-03-16T04:41:11,250 Created temporary directory: /tmp/pip-unpack-r92yd357
2021-03-16T04:41:11,251 Building wheels for collected packages: rdkit-to-params
2021-03-16T04:41:11,256   Created temporary directory: /tmp/pip-wheel-ktw_yuob
2021-03-16T04:41:11,256   Building wheel for rdkit-to-params (setup.py): started
2021-03-16T04:41:11,257   Destination directory: /tmp/pip-wheel-ktw_yuob
2021-03-16T04:41:11,257   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ktw_yuob
2021-03-16T04:41:12,039   /tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5/setup.py:29: UserWarning: Albeit optional, a lot of this code relies on rdkit which cannot be pip installed.To install try either conda install -c conda-forge rdkit or sudo apt-get/brew install python3-rdkit or visit rdkit documentation.
2021-03-16T04:41:12,039     'conda install -c conda-forge rdkit or ' +
2021-03-16T04:41:12,040   /tmp/pip-wheel-7p5opb1z/rdkit-to-params_1b4bb6fb1fbf461f9b5a90815c26a1c5/setup.py:33: UserWarning: The minimisation part of this code uses pyrosetta, which has to be downloaded from the Rosetta software site due to licencing. Without it only the classes Monster and Rectifier will work
2021-03-16T04:41:12,040     warn('The minimisation part of this code uses pyrosetta, which has to be downloaded from ' +
2021-03-16T04:41:12,165   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:461: UserWarning: Normalizing '1.1.5b' to '1.1.5b0'
2021-03-16T04:41:12,165     warnings.warn(tmpl.format(**locals()))
2021-03-16T04:41:12,192   running bdist_wheel
2021-03-16T04:41:12,199   running build
2021-03-16T04:41:12,200   running build_py
2021-03-16T04:41:12,333   creating build
2021-03-16T04:41:12,333   creating build/lib
2021-03-16T04:41:12,334   creating build/lib/tests
2021-03-16T04:41:12,335   copying tests/__init__.py -> build/lib/tests
2021-03-16T04:41:12,338   creating build/lib/rdkit_to_params
2021-03-16T04:41:12,339   copying rdkit_to_params/constraint.py -> build/lib/rdkit_to_params
2021-03-16T04:41:12,341   copying rdkit_to_params/_init_mixin.py -> build/lib/rdkit_to_params
2021-03-16T04:41:12,343   copying rdkit_to_params/_io_mixin.py -> build/lib/rdkit_to_params
2021-03-16T04:41:12,345   copying rdkit_to_params/_pyrosetta_mixin.py -> build/lib/rdkit_to_params
2021-03-16T04:41:12,348   copying rdkit_to_params/__init__.py -> build/lib/rdkit_to_params
2021-03-16T04:41:12,350   copying rdkit_to_params/entries.py -> build/lib/rdkit_to_params
2021-03-16T04:41:12,354   creating build/lib/rdkit_to_params/rdkitside
2021-03-16T04:41:12,355   copying rdkit_to_params/rdkitside/_rdkit_prep.py -> build/lib/rdkit_to_params/rdkitside
2021-03-16T04:41:12,358   copying rdkit_to_params/rdkitside/_rdkit_inits.py -> build/lib/rdkit_to_params/rdkitside
2021-03-16T04:41:12,360   copying rdkit_to_params/rdkitside/_rdkit_rename.py -> build/lib/rdkit_to_params/rdkitside
2021-03-16T04:41:12,363   copying rdkit_to_params/rdkitside/_rdkit_convert.py -> build/lib/rdkit_to_params/rdkitside
2021-03-16T04:41:12,365   copying rdkit_to_params/rdkitside/__init__.py -> build/lib/rdkit_to_params/rdkitside
2021-03-16T04:41:12,368   creating build/lib/rdkit_to_params/cli
2021-03-16T04:41:12,369   copying rdkit_to_params/cli/__init__.py -> build/lib/rdkit_to_params/cli
2021-03-16T04:41:12,377   installing to build/bdist.linux-armv7l/wheel
2021-03-16T04:41:12,377   running install
2021-03-16T04:41:12,378   running install_lib
2021-03-16T04:41:12,382   creating build/bdist.linux-armv7l
2021-03-16T04:41:12,383   creating build/bdist.linux-armv7l/wheel
2021-03-16T04:41:12,564   creating build/bdist.linux-armv7l/wheel/tests
2021-03-16T04:41:12,566   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2021-03-16T04:41:12,571   creating build/bdist.linux-armv7l/wheel/rdkit_to_params
2021-03-16T04:41:12,573   copying build/lib/rdkit_to_params/constraint.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params
2021-03-16T04:41:12,578   copying build/lib/rdkit_to_params/_init_mixin.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params
2021-03-16T04:41:12,582   creating build/bdist.linux-armv7l/wheel/rdkit_to_params/rdkitside
2021-03-16T04:41:12,584   copying build/lib/rdkit_to_params/rdkitside/_rdkit_prep.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params/rdkitside
2021-03-16T04:41:12,588   copying build/lib/rdkit_to_params/rdkitside/_rdkit_inits.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params/rdkitside
2021-03-16T04:41:12,590   copying build/lib/rdkit_to_params/rdkitside/_rdkit_rename.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params/rdkitside
2021-03-16T04:41:12,593   copying build/lib/rdkit_to_params/rdkitside/_rdkit_convert.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params/rdkitside
2021-03-16T04:41:12,596   copying build/lib/rdkit_to_params/rdkitside/__init__.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params/rdkitside
2021-03-16T04:41:12,598   copying build/lib/rdkit_to_params/_io_mixin.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params
2021-03-16T04:41:12,600   copying build/lib/rdkit_to_params/_pyrosetta_mixin.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params
2021-03-16T04:41:12,603   creating build/bdist.linux-armv7l/wheel/rdkit_to_params/cli
2021-03-16T04:41:12,604   copying build/lib/rdkit_to_params/cli/__init__.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params/cli
2021-03-16T04:41:12,607   copying build/lib/rdkit_to_params/__init__.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params
2021-03-16T04:41:12,610   copying build/lib/rdkit_to_params/entries.py -> build/bdist.linux-armv7l/wheel/rdkit_to_params
2021-03-16T04:41:12,613   running install_egg_info
2021-03-16T04:41:12,635   running egg_info
2021-03-16T04:41:12,636   writing rdkit_to_params.egg-info/PKG-INFO
2021-03-16T04:41:12,639   writing dependency_links to rdkit_to_params.egg-info/dependency_links.txt
2021-03-16T04:41:12,641   writing entry points to rdkit_to_params.egg-info/entry_points.txt
2021-03-16T04:41:12,642   writing top-level names to rdkit_to_params.egg-info/top_level.txt
2021-03-16T04:41:12,650   reading manifest file 'rdkit_to_params.egg-info/SOURCES.txt'
2021-03-16T04:41:12,655   writing manifest file 'rdkit_to_params.egg-info/SOURCES.txt'
2021-03-16T04:41:12,656   Copying rdkit_to_params.egg-info to build/bdist.linux-armv7l/wheel/rdkit_to_params-1.1.5b0-py3.7.egg-info
2021-03-16T04:41:12,669   running install_scripts
2021-03-16T04:41:12,750   creating build/bdist.linux-armv7l/wheel/rdkit_to_params-1.1.5b0.dist-info/WHEEL
2021-03-16T04:41:12,753   creating '/tmp/pip-wheel-ktw_yuob/rdkit_to_params-1.1.5b0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-03-16T04:41:12,757   adding 'rdkit_to_params/__init__.py'
2021-03-16T04:41:12,759   adding 'rdkit_to_params/_init_mixin.py'
2021-03-16T04:41:12,760   adding 'rdkit_to_params/_io_mixin.py'
2021-03-16T04:41:12,762   adding 'rdkit_to_params/_pyrosetta_mixin.py'
2021-03-16T04:41:12,764   adding 'rdkit_to_params/constraint.py'
2021-03-16T04:41:12,767   adding 'rdkit_to_params/entries.py'
2021-03-16T04:41:12,769   adding 'rdkit_to_params/cli/__init__.py'
2021-03-16T04:41:12,771   adding 'rdkit_to_params/rdkitside/__init__.py'
2021-03-16T04:41:12,774   adding 'rdkit_to_params/rdkitside/_rdkit_convert.py'
2021-03-16T04:41:12,776   adding 'rdkit_to_params/rdkitside/_rdkit_inits.py'
2021-03-16T04:41:12,779   adding 'rdkit_to_params/rdkitside/_rdkit_prep.py'
2021-03-16T04:41:12,781   adding 'rdkit_to_params/rdkitside/_rdkit_rename.py'
2021-03-16T04:41:12,785   adding 'tests/__init__.py'
2021-03-16T04:41:12,787   adding 'rdkit_to_params-1.1.5b0.dist-info/METADATA'
2021-03-16T04:41:12,788   adding 'rdkit_to_params-1.1.5b0.dist-info/WHEEL'
2021-03-16T04:41:12,790   adding 'rdkit_to_params-1.1.5b0.dist-info/entry_points.txt'
2021-03-16T04:41:12,790   adding 'rdkit_to_params-1.1.5b0.dist-info/top_level.txt'
2021-03-16T04:41:12,791   adding 'rdkit_to_params-1.1.5b0.dist-info/RECORD'
2021-03-16T04:41:12,793   removing build/bdist.linux-armv7l/wheel
2021-03-16T04:41:12,867   Building wheel for rdkit-to-params (setup.py): finished with status 'done'
2021-03-16T04:41:12,870   Created wheel for rdkit-to-params: filename=rdkit_to_params-1.1.5b0-py3-none-any.whl size=42016 sha256=838de8cc29fd93d56b5f9b1dde19f77122535aea1d4b3ad588c2ab0bfea79847
2021-03-16T04:41:12,870   Stored in directory: /tmp/pip-ephem-wheel-cache-yqi8gzv_/wheels/1e/e3/a2/de05a40c58f6c486c10ce123d10442a1dd47a510280f41e88a
2021-03-16T04:41:12,881 Successfully built rdkit-to-params
2021-03-16T04:41:12,886 Removed build tracker: '/tmp/pip-req-tracker-gjmik3s2'