2021-03-16T06:21:40,591 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-03-16T06:21:41,169 Created temporary directory: /tmp/pip-ephem-wheel-cache-1gg042rp 2021-03-16T06:21:41,174 Created temporary directory: /tmp/pip-req-tracker-z8oknmmd 2021-03-16T06:21:41,174 Initialized build tracking at /tmp/pip-req-tracker-z8oknmmd 2021-03-16T06:21:41,175 Created build tracker: /tmp/pip-req-tracker-z8oknmmd 2021-03-16T06:21:41,175 Entered build tracker: /tmp/pip-req-tracker-z8oknmmd 2021-03-16T06:21:41,176 Created temporary directory: /tmp/pip-wheel-btz94nly 2021-03-16T06:21:41,231 1 location(s) to search for versions of damona: 2021-03-16T06:21:41,231 * https://pypi.org/simple/damona/ 2021-03-16T06:21:41,232 Fetching project page and analyzing links: https://pypi.org/simple/damona/ 2021-03-16T06:21:41,234 Getting page https://pypi.org/simple/damona/ 2021-03-16T06:21:41,238 Found index url https://pypi.org/simple 2021-03-16T06:21:41,531 Found link https://files.pythonhosted.org/packages/cd/9e/27ac1c5e27caa58f2d161dff75c5c4cdd92670440b07e7709802a9459b9c/damona-0.1.0.tar.gz#sha256=ffd1316e321796f0fa5a56b54f75dd4f5d927ecf0bc9c1a336f160f038ae6890 (from https://pypi.org/simple/damona/), version: 0.1.0 2021-03-16T06:21:41,532 Found link https://files.pythonhosted.org/packages/c9/20/7fe4d2f1c34300ed845a3b033a8cd8b3de72b82a25599330b10e2317ca48/damona-0.1.1.tar.gz#sha256=b5c70b83f51e4d32f2f3dda532abf3713a177b8e5ef7a0b26a44a801a0313236 (from https://pypi.org/simple/damona/), version: 0.1.1 2021-03-16T06:21:41,533 Found link https://files.pythonhosted.org/packages/36/9b/153b2e8849b6cf3b78ac13c3e30fbd4f1774c31b7b34cb849eb3a14bf69c/damona-0.2.0.tar.gz#sha256=6023b50d62eb18c216383a96021bf88cdf651ebc741397892b74bc49d642bdc1 (from https://pypi.org/simple/damona/), version: 0.2.0 2021-03-16T06:21:41,534 Found link https://files.pythonhosted.org/packages/5d/85/e936fbc729383625e399b7dabd3238995c915084986ec573588855c921ee/damona-0.2.1.tar.gz#sha256=69aa6cb1042ad0bf06363f68867de0fec1be4cf717d73574829d15967fadf019 (from https://pypi.org/simple/damona/), version: 0.2.1 2021-03-16T06:21:41,534 Found link https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22 (from https://pypi.org/simple/damona/), version: 0.2.2 2021-03-16T06:21:41,535 Found link https://files.pythonhosted.org/packages/2a/2f/3eca4d23aad1c0df2a1f708f49fd68de86b47fb3ff0b7270182074adbe24/damona-0.3.0.tar.gz#sha256=d87f56f4c50b9f87c6ef42a8c2ee9642e404889894524acd879dbfa301d88477 (from https://pypi.org/simple/damona/), version: 0.3.0 2021-03-16T06:21:41,536 Found link https://files.pythonhosted.org/packages/a4/85/cf3ba30aadaf7e322c200ff61874eb24a3ded6d64ad308d15760d26338f1/damona-0.3.1.tar.gz#sha256=a99d48dcfb750e079771ae08e93ade1b0223cc08744cc65bf5d9623771c74439 (from https://pypi.org/simple/damona/), version: 0.3.1 2021-03-16T06:21:41,537 Found link https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz#sha256=533275af540923fe2ff8a67b0ee49852cfa322880906e32461b79019aecf444e (from https://pypi.org/simple/damona/), version: 0.4.0 2021-03-16T06:21:41,537 Found link https://files.pythonhosted.org/packages/66/87/cc314bac96ca0afc29e95d91a07d70c56df5c37cb4209f8bfc4eb959418a/damona-0.4.1.tar.gz#sha256=cc5f816a84aca53cae91d7c851a2023bbea9f9f6bf5c8a3f4ac2a3d5f7588340 (from https://pypi.org/simple/damona/), version: 0.4.1 2021-03-16T06:21:41,538 Found link https://files.pythonhosted.org/packages/50/5a/2b91d89732ad7eabd61d2060de0ecc94c4a04c25999f199d2cb93ff943e5/damona-0.4.2.tar.gz#sha256=13f160a7c327acad47e006164bd84e766c94e36f50fe0eef3617a0031b1a2a5f (from https://pypi.org/simple/damona/), version: 0.4.2 2021-03-16T06:21:41,539 Found link https://files.pythonhosted.org/packages/e5/d8/0d4fe942e4a6dd2b5a45ac16a038f99dbea115dde61c41aec5f2815ef2a6/damona-0.4.3.tar.gz#sha256=ccd9e632ac9e87e2dd4774cad490a80de8c91391ca9f1f42ca44f27a41782edc (from https://pypi.org/simple/damona/), version: 0.4.3 2021-03-16T06:21:41,539 Found link https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz#sha256=6742de042d81a26a288ad91fb2824fd5cede8f6f2d593238ab65ef88ddb85108 (from https://pypi.org/simple/damona/), version: 0.5.0 2021-03-16T06:21:41,567 Given no hashes to check 1 links for project 'damona': discarding no candidates 2021-03-16T06:21:41,594 Collecting damona==0.5.0 2021-03-16T06:21:41,597 Created temporary directory: /tmp/pip-unpack-upqbrbkg 2021-03-16T06:21:41,810 Downloading damona-0.5.0.tar.gz (46 kB) 2021-03-16T06:21:42,203 Added damona==0.5.0 from https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz#sha256=6742de042d81a26a288ad91fb2824fd5cede8f6f2d593238ab65ef88ddb85108 to build tracker '/tmp/pip-req-tracker-z8oknmmd' 2021-03-16T06:21:42,205 Running setup.py (path:/tmp/pip-wheel-btz94nly/damona_2c1056cf98a54988afdd4b8919c7030f/setup.py) egg_info for package damona 2021-03-16T06:21:42,206 Created temporary directory: /tmp/pip-pip-egg-info-x3jm4e4m 2021-03-16T06:21:42,207 Running command python setup.py egg_info 2021-03-16T06:21:44,249 running egg_info 2021-03-16T06:21:44,254 creating /tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info 2021-03-16T06:21:44,256 writing /tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/PKG-INFO 2021-03-16T06:21:44,262 writing top-level names to /tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/top_level.txt 2021-03-16T06:21:44,264 writing requirements to /tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/requires.txt 2021-03-16T06:21:44,266 writing dependency_links to /tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/dependency_links.txt 2021-03-16T06:21:44,267 writing entry points to /tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/entry_points.txt 2021-03-16T06:21:44,271 writing manifest file '/tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/SOURCES.txt' 2021-03-16T06:21:44,593 reading manifest file '/tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/SOURCES.txt' 2021-03-16T06:21:44,595 reading manifest template 'MANIFEST.in' 2021-03-16T06:21:44,598 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-03-16T06:21:44,600 warning: no previously-included files matching '*pyc' found under directory '*' 2021-03-16T06:21:44,614 writing manifest file '/tmp/pip-pip-egg-info-x3jm4e4m/damona.egg-info/SOURCES.txt' 2021-03-16T06:21:44,760 Source in /tmp/pip-wheel-btz94nly/damona_2c1056cf98a54988afdd4b8919c7030f has version 0.5.0, which satisfies requirement damona==0.5.0 from https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz#sha256=6742de042d81a26a288ad91fb2824fd5cede8f6f2d593238ab65ef88ddb85108 2021-03-16T06:21:44,761 Removed damona==0.5.0 from https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz#sha256=6742de042d81a26a288ad91fb2824fd5cede8f6f2d593238ab65ef88ddb85108 from build tracker '/tmp/pip-req-tracker-z8oknmmd' 2021-03-16T06:21:44,773 Created temporary directory: /tmp/pip-unpack-ngk6lh8z 2021-03-16T06:21:44,774 Building wheels for collected packages: damona 2021-03-16T06:21:44,781 Created temporary directory: /tmp/pip-wheel-ul5svvjy 2021-03-16T06:21:44,781 Building wheel for damona (setup.py): started 2021-03-16T06:21:44,782 Destination directory: /tmp/pip-wheel-ul5svvjy 2021-03-16T06:21:44,783 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-btz94nly/damona_2c1056cf98a54988afdd4b8919c7030f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-btz94nly/damona_2c1056cf98a54988afdd4b8919c7030f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ul5svvjy 2021-03-16T06:21:46,827 running bdist_wheel 2021-03-16T06:21:46,833 running build 2021-03-16T06:21:46,834 running build_py 2021-03-16T06:21:47,103 creating build 2021-03-16T06:21:47,104 creating build/lib 2021-03-16T06:21:47,105 creating build/lib/damona 2021-03-16T06:21:47,107 copying damona/colors.py -> build/lib/damona 2021-03-16T06:21:47,110 copying damona/__init__.py -> build/lib/damona 2021-03-16T06:21:47,113 copying damona/config.py -> build/lib/damona 2021-03-16T06:21:47,117 copying damona/script.py -> build/lib/damona 2021-03-16T06:21:47,121 copying damona/common.py -> build/lib/damona 2021-03-16T06:21:47,127 copying damona/environ.py -> build/lib/damona 2021-03-16T06:21:47,133 copying damona/registry.py -> build/lib/damona 2021-03-16T06:21:47,139 copying damona/install.py -> build/lib/damona 2021-03-16T06:21:47,144 copying damona/builders.py -> build/lib/damona 2021-03-16T06:21:47,148 creating build/lib/damona/recipes 2021-03-16T06:21:47,150 copying damona/recipes/__init__.py -> build/lib/damona/recipes 2021-03-16T06:21:47,181 creating build/lib/damona/recipes/fastqc 2021-03-16T06:21:47,182 copying damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/lib/damona/recipes/fastqc 2021-03-16T06:21:47,186 copying damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/lib/damona/recipes/fastqc 2021-03-16T06:21:47,190 creating build/lib/damona/recipes/salmon 2021-03-16T06:21:47,191 copying damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/lib/damona/recipes/salmon 2021-03-16T06:21:47,195 creating build/lib/damona/recipes/ubuntu 2021-03-16T06:21:47,197 copying damona/recipes/ubuntu/Singularity.ubuntu_16.04 -> build/lib/damona/recipes/ubuntu 2021-03-16T06:21:47,201 copying damona/recipes/ubuntu/Singularity.ubuntu_18.04 -> build/lib/damona/recipes/ubuntu 2021-03-16T06:21:47,206 creating build/lib/damona/recipes/kraken 2021-03-16T06:21:47,208 copying damona/recipes/kraken/Singularity.kraken_1.1 -> build/lib/damona/recipes/kraken 2021-03-16T06:21:47,214 copying damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/lib/damona/recipes/kraken 2021-03-16T06:21:47,219 creating build/lib/damona/recipes/gffread 2021-03-16T06:21:47,222 copying damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/lib/damona/recipes/gffread 2021-03-16T06:21:47,226 creating build/lib/damona/recipes/falco 2021-03-16T06:21:47,228 copying damona/recipes/falco/Singularity.falco_0.2.1 -> build/lib/damona/recipes/falco 2021-03-16T06:21:47,232 creating build/lib/damona/recipes/quast 2021-03-16T06:21:47,233 copying damona/recipes/quast/Singularity.quast_5.0.2 -> build/lib/damona/recipes/quast 2021-03-16T06:21:47,237 creating build/lib/damona/recipes/minimap2 2021-03-16T06:21:47,239 copying damona/recipes/minimap2/Singularity.minimap2_2.17.0 -> build/lib/damona/recipes/minimap2 2021-03-16T06:21:47,243 creating build/lib/damona/recipes/trf 2021-03-16T06:21:47,245 copying damona/recipes/trf/Singularity.trf_4.09 -> build/lib/damona/recipes/trf 2021-03-16T06:21:47,251 copying damona/recipes/trf/Singularity.trf_4.10.0 -> build/lib/damona/recipes/trf 2021-03-16T06:21:47,256 creating build/lib/damona/recipes/bcl2fastq 2021-03-16T06:21:47,258 copying damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/lib/damona/recipes/bcl2fastq 2021-03-16T06:21:47,264 creating build/lib/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,266 copying damona/recipes/sequana_fastqc/Singularity.add_slurm -> build/lib/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,270 copying damona/recipes/sequana_fastqc/Singularity.sequana_fastqc_1.0.0 -> build/lib/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,273 creating build/lib/damona/recipes/rnadiff 2021-03-16T06:21:47,275 copying damona/recipes/rnadiff/Singularity.rnadiff_1.7.1 -> build/lib/damona/recipes/rnadiff 2021-03-16T06:21:47,279 creating build/lib/damona/recipes/rnaseqc 2021-03-16T06:21:47,280 copying damona/recipes/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/lib/damona/recipes/rnaseqc 2021-03-16T06:21:47,284 creating build/lib/damona/recipes/graphviz_dot 2021-03-16T06:21:47,285 copying damona/recipes/graphviz_dot/Singularity.graphviz_2.43.0 -> build/lib/damona/recipes/graphviz_dot 2021-03-16T06:21:47,289 creating build/lib/damona/recipes/sequana_demultiplex 2021-03-16T06:21:47,291 copying damona/recipes/sequana_demultiplex/Singularity.sequana_demultiplex_1.0.1 -> build/lib/damona/recipes/sequana_demultiplex 2021-03-16T06:21:47,295 creating build/lib/damona/recipes/R 2021-03-16T06:21:47,296 copying damona/recipes/R/Singularity.R_3.6.3 -> build/lib/damona/recipes/R 2021-03-16T06:21:47,300 copying damona/recipes/R/Singularity.R_4.0.2 -> build/lib/damona/recipes/R 2021-03-16T06:21:47,304 creating build/lib/damona/recipes/prokka 2021-03-16T06:21:47,305 copying damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/lib/damona/recipes/prokka 2021-03-16T06:21:47,311 creating build/lib/damona/recipes/deseq 2021-03-16T06:21:47,313 copying damona/recipes/deseq/Singularity.deseq2_2.0.0 -> build/lib/damona/recipes/deseq 2021-03-16T06:21:47,319 creating build/lib/damona/recipes/sequana_rnaseq 2021-03-16T06:21:47,321 copying damona/recipes/sequana_rnaseq/Singularity.sequana_rnaseq_0.10.0 -> build/lib/damona/recipes/sequana_rnaseq 2021-03-16T06:21:47,327 creating build/lib/damona/recipes/sequana 2021-03-16T06:21:47,328 copying damona/recipes/sequana/Singularity.sequana_0.9.1 -> build/lib/damona/recipes/sequana 2021-03-16T06:21:47,332 creating build/lib/damona/recipes/damona 2021-03-16T06:21:47,333 copying damona/recipes/damona/Singularity.damona_0.4.2 -> build/lib/damona/recipes/damona 2021-03-16T06:21:47,337 copying damona/recipes/damona/Singularity.damona_0.3.0 -> build/lib/damona/recipes/damona 2021-03-16T06:21:47,341 creating build/lib/damona/recipes/conda 2021-03-16T06:21:47,342 copying damona/recipes/conda/Singularity.conda_4.9.2 -> build/lib/damona/recipes/conda 2021-03-16T06:21:47,346 copying damona/recipes/conda/Singularity.conda_4.7.12 -> build/lib/damona/recipes/conda 2021-03-16T06:21:47,349 creating build/lib/damona/recipes/sequana_tools 2021-03-16T06:21:47,351 copying damona/recipes/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/lib/damona/recipes/sequana_tools 2021-03-16T06:21:47,355 creating build/lib/damona/recipes/canu 2021-03-16T06:21:47,356 copying damona/recipes/canu/Singularity.canu_1.6.0 -> build/lib/damona/recipes/canu 2021-03-16T06:21:47,360 copying damona/recipes/canu/Singularity.canu_1.8.0 -> build/lib/damona/recipes/canu 2021-03-16T06:21:47,363 creating build/lib/damona/recipes/phantompeakqualtools 2021-03-16T06:21:47,364 copying damona/recipes/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/lib/damona/recipes/phantompeakqualtools 2021-03-16T06:21:47,368 copying damona/recipes/fastqc/registry.yaml -> build/lib/damona/recipes/fastqc 2021-03-16T06:21:47,372 copying damona/recipes/salmon/registry.yaml -> build/lib/damona/recipes/salmon 2021-03-16T06:21:47,375 copying damona/recipes/ubuntu/registry.yaml -> build/lib/damona/recipes/ubuntu 2021-03-16T06:21:47,379 copying damona/recipes/kraken/registry.yaml -> build/lib/damona/recipes/kraken 2021-03-16T06:21:47,382 copying damona/recipes/gffread/registry.yaml -> build/lib/damona/recipes/gffread 2021-03-16T06:21:47,386 copying damona/recipes/falco/registry.yaml -> build/lib/damona/recipes/falco 2021-03-16T06:21:47,389 copying damona/recipes/quast/registry.yaml -> build/lib/damona/recipes/quast 2021-03-16T06:21:47,392 copying damona/recipes/minimap2/registry.yaml -> build/lib/damona/recipes/minimap2 2021-03-16T06:21:47,396 copying damona/recipes/trf/registry.yaml -> build/lib/damona/recipes/trf 2021-03-16T06:21:47,399 copying damona/recipes/bcl2fastq/registry.yaml -> build/lib/damona/recipes/bcl2fastq 2021-03-16T06:21:47,403 copying damona/recipes/sequana_fastqc/registry.yaml -> build/lib/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,406 copying damona/recipes/rnadiff/registry.yaml -> build/lib/damona/recipes/rnadiff 2021-03-16T06:21:47,409 creating build/lib/damona/recipes/hisat2 2021-03-16T06:21:47,411 copying damona/recipes/hisat2/registry.yaml -> build/lib/damona/recipes/hisat2 2021-03-16T06:21:47,415 copying damona/recipes/rnaseqc/registry.yaml -> build/lib/damona/recipes/rnaseqc 2021-03-16T06:21:47,418 copying damona/recipes/graphviz_dot/registry.yaml -> build/lib/damona/recipes/graphviz_dot 2021-03-16T06:21:47,421 copying damona/recipes/sequana_demultiplex/registry.yaml -> build/lib/damona/recipes/sequana_demultiplex 2021-03-16T06:21:47,425 copying damona/recipes/R/registry.yaml -> build/lib/damona/recipes/R 2021-03-16T06:21:47,428 copying damona/recipes/prokka/registry.yaml -> build/lib/damona/recipes/prokka 2021-03-16T06:21:47,431 copying damona/recipes/deseq/registry.yaml -> build/lib/damona/recipes/deseq 2021-03-16T06:21:47,435 copying damona/recipes/sequana_rnaseq/registry.yaml -> build/lib/damona/recipes/sequana_rnaseq 2021-03-16T06:21:47,438 copying damona/recipes/sequana/registry.yaml -> build/lib/damona/recipes/sequana 2021-03-16T06:21:47,441 copying damona/recipes/damona/registry.yaml -> build/lib/damona/recipes/damona 2021-03-16T06:21:47,445 copying damona/recipes/conda/registry.yaml -> build/lib/damona/recipes/conda 2021-03-16T06:21:47,448 copying damona/recipes/sequana_tools/registry.yaml -> build/lib/damona/recipes/sequana_tools 2021-03-16T06:21:47,452 copying damona/recipes/canu/registry.yaml -> build/lib/damona/recipes/canu 2021-03-16T06:21:47,455 copying damona/recipes/phantompeakqualtools/registry.yaml -> build/lib/damona/recipes/phantompeakqualtools 2021-03-16T06:21:47,461 installing to build/bdist.linux-armv7l/wheel 2021-03-16T06:21:47,462 running install 2021-03-16T06:21:47,464 running install_lib 2021-03-16T06:21:47,469 creating build/bdist.linux-armv7l 2021-03-16T06:21:47,470 creating build/bdist.linux-armv7l/wheel 2021-03-16T06:21:47,473 creating build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,474 copying build/lib/damona/colors.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,477 copying build/lib/damona/__init__.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,480 copying build/lib/damona/config.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,483 copying build/lib/damona/script.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,489 creating build/bdist.linux-armv7l/wheel/damona/recipes 2021-03-16T06:21:47,492 creating build/bdist.linux-armv7l/wheel/damona/recipes/fastqc 2021-03-16T06:21:47,495 copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc 2021-03-16T06:21:47,499 copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc 2021-03-16T06:21:47,504 copying build/lib/damona/recipes/fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc 2021-03-16T06:21:47,510 creating build/bdist.linux-armv7l/wheel/damona/recipes/salmon 2021-03-16T06:21:47,511 copying build/lib/damona/recipes/salmon/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon 2021-03-16T06:21:47,514 copying build/lib/damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon 2021-03-16T06:21:47,518 creating build/bdist.linux-armv7l/wheel/damona/recipes/ubuntu 2021-03-16T06:21:47,519 copying build/lib/damona/recipes/ubuntu/Singularity.ubuntu_16.04 -> build/bdist.linux-armv7l/wheel/damona/recipes/ubuntu 2021-03-16T06:21:47,523 copying build/lib/damona/recipes/ubuntu/Singularity.ubuntu_18.04 -> build/bdist.linux-armv7l/wheel/damona/recipes/ubuntu 2021-03-16T06:21:47,526 copying build/lib/damona/recipes/ubuntu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/ubuntu 2021-03-16T06:21:47,529 creating build/bdist.linux-armv7l/wheel/damona/recipes/kraken 2021-03-16T06:21:47,531 copying build/lib/damona/recipes/kraken/Singularity.kraken_1.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken 2021-03-16T06:21:47,534 copying build/lib/damona/recipes/kraken/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken 2021-03-16T06:21:47,537 copying build/lib/damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken 2021-03-16T06:21:47,540 creating build/bdist.linux-armv7l/wheel/damona/recipes/gffread 2021-03-16T06:21:47,542 copying build/lib/damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread 2021-03-16T06:21:47,545 copying build/lib/damona/recipes/gffread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread 2021-03-16T06:21:47,548 copying build/lib/damona/recipes/__init__.py -> build/bdist.linux-armv7l/wheel/damona/recipes 2021-03-16T06:21:47,551 creating build/bdist.linux-armv7l/wheel/damona/recipes/falco 2021-03-16T06:21:47,552 copying build/lib/damona/recipes/falco/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/falco 2021-03-16T06:21:47,555 copying build/lib/damona/recipes/falco/Singularity.falco_0.2.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/falco 2021-03-16T06:21:47,559 creating build/bdist.linux-armv7l/wheel/damona/recipes/quast 2021-03-16T06:21:47,560 copying build/lib/damona/recipes/quast/Singularity.quast_5.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/quast 2021-03-16T06:21:47,564 copying build/lib/damona/recipes/quast/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/quast 2021-03-16T06:21:47,567 creating build/bdist.linux-armv7l/wheel/damona/recipes/minimap2 2021-03-16T06:21:47,569 copying build/lib/damona/recipes/minimap2/Singularity.minimap2_2.17.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/minimap2 2021-03-16T06:21:47,572 copying build/lib/damona/recipes/minimap2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/minimap2 2021-03-16T06:21:47,575 creating build/bdist.linux-armv7l/wheel/damona/recipes/trf 2021-03-16T06:21:47,577 copying build/lib/damona/recipes/trf/Singularity.trf_4.09 -> build/bdist.linux-armv7l/wheel/damona/recipes/trf 2021-03-16T06:21:47,580 copying build/lib/damona/recipes/trf/Singularity.trf_4.10.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/trf 2021-03-16T06:21:47,583 copying build/lib/damona/recipes/trf/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/trf 2021-03-16T06:21:47,587 creating build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq 2021-03-16T06:21:47,588 copying build/lib/damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq 2021-03-16T06:21:47,591 copying build/lib/damona/recipes/bcl2fastq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq 2021-03-16T06:21:47,595 creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,596 copying build/lib/damona/recipes/sequana_fastqc/Singularity.add_slurm -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,600 copying build/lib/damona/recipes/sequana_fastqc/Singularity.sequana_fastqc_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,603 copying build/lib/damona/recipes/sequana_fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_fastqc 2021-03-16T06:21:47,606 creating build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff 2021-03-16T06:21:47,608 copying build/lib/damona/recipes/rnadiff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff 2021-03-16T06:21:47,611 copying build/lib/damona/recipes/rnadiff/Singularity.rnadiff_1.7.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff 2021-03-16T06:21:47,615 creating build/bdist.linux-armv7l/wheel/damona/recipes/hisat2 2021-03-16T06:21:47,616 copying build/lib/damona/recipes/hisat2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/hisat2 2021-03-16T06:21:47,620 creating build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc 2021-03-16T06:21:47,621 copying build/lib/damona/recipes/rnaseqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc 2021-03-16T06:21:47,624 copying build/lib/damona/recipes/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rnaseqc 2021-03-16T06:21:47,628 creating build/bdist.linux-armv7l/wheel/damona/recipes/graphviz_dot 2021-03-16T06:21:47,629 copying build/lib/damona/recipes/graphviz_dot/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/graphviz_dot 2021-03-16T06:21:47,633 copying build/lib/damona/recipes/graphviz_dot/Singularity.graphviz_2.43.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/graphviz_dot 2021-03-16T06:21:47,636 creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_demultiplex 2021-03-16T06:21:47,637 copying build/lib/damona/recipes/sequana_demultiplex/Singularity.sequana_demultiplex_1.0.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_demultiplex 2021-03-16T06:21:47,641 copying build/lib/damona/recipes/sequana_demultiplex/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_demultiplex 2021-03-16T06:21:47,644 creating build/bdist.linux-armv7l/wheel/damona/recipes/R 2021-03-16T06:21:47,646 copying build/lib/damona/recipes/R/Singularity.R_3.6.3 -> build/bdist.linux-armv7l/wheel/damona/recipes/R 2021-03-16T06:21:47,649 copying build/lib/damona/recipes/R/Singularity.R_4.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/R 2021-03-16T06:21:47,652 copying build/lib/damona/recipes/R/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/R 2021-03-16T06:21:47,656 creating build/bdist.linux-armv7l/wheel/damona/recipes/prokka 2021-03-16T06:21:47,657 copying build/lib/damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka 2021-03-16T06:21:47,660 copying build/lib/damona/recipes/prokka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka 2021-03-16T06:21:47,664 creating build/bdist.linux-armv7l/wheel/damona/recipes/deseq 2021-03-16T06:21:47,665 copying build/lib/damona/recipes/deseq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/deseq 2021-03-16T06:21:47,668 copying build/lib/damona/recipes/deseq/Singularity.deseq2_2.0.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/deseq 2021-03-16T06:21:47,671 creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_rnaseq 2021-03-16T06:21:47,673 copying build/lib/damona/recipes/sequana_rnaseq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_rnaseq 2021-03-16T06:21:47,676 copying build/lib/damona/recipes/sequana_rnaseq/Singularity.sequana_rnaseq_0.10.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_rnaseq 2021-03-16T06:21:47,680 creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana 2021-03-16T06:21:47,681 copying build/lib/damona/recipes/sequana/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana 2021-03-16T06:21:47,684 copying build/lib/damona/recipes/sequana/Singularity.sequana_0.9.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana 2021-03-16T06:21:47,688 creating build/bdist.linux-armv7l/wheel/damona/recipes/damona 2021-03-16T06:21:47,689 copying build/lib/damona/recipes/damona/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/damona 2021-03-16T06:21:47,692 copying build/lib/damona/recipes/damona/Singularity.damona_0.4.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/damona 2021-03-16T06:21:47,695 copying build/lib/damona/recipes/damona/Singularity.damona_0.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/damona 2021-03-16T06:21:47,699 creating build/bdist.linux-armv7l/wheel/damona/recipes/conda 2021-03-16T06:21:47,700 copying build/lib/damona/recipes/conda/Singularity.conda_4.9.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda 2021-03-16T06:21:47,704 copying build/lib/damona/recipes/conda/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/conda 2021-03-16T06:21:47,707 copying build/lib/damona/recipes/conda/Singularity.conda_4.7.12 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda 2021-03-16T06:21:47,710 creating build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools 2021-03-16T06:21:47,712 copying build/lib/damona/recipes/sequana_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools 2021-03-16T06:21:47,715 copying build/lib/damona/recipes/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/sequana_tools 2021-03-16T06:21:47,719 creating build/bdist.linux-armv7l/wheel/damona/recipes/canu 2021-03-16T06:21:47,720 copying build/lib/damona/recipes/canu/Singularity.canu_1.6.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/canu 2021-03-16T06:21:47,724 copying build/lib/damona/recipes/canu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/canu 2021-03-16T06:21:47,726 copying build/lib/damona/recipes/canu/Singularity.canu_1.8.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/canu 2021-03-16T06:21:47,730 creating build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools 2021-03-16T06:21:47,731 copying build/lib/damona/recipes/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools 2021-03-16T06:21:47,735 copying build/lib/damona/recipes/phantompeakqualtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/phantompeakqualtools 2021-03-16T06:21:47,738 copying build/lib/damona/common.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,741 copying build/lib/damona/environ.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,745 copying build/lib/damona/registry.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,749 copying build/lib/damona/install.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,753 copying build/lib/damona/builders.py -> build/bdist.linux-armv7l/wheel/damona 2021-03-16T06:21:47,757 running install_egg_info 2021-03-16T06:21:47,772 running egg_info 2021-03-16T06:21:47,774 writing dependency_links to damona.egg-info/dependency_links.txt 2021-03-16T06:21:47,776 writing damona.egg-info/PKG-INFO 2021-03-16T06:21:47,780 writing top-level names to damona.egg-info/top_level.txt 2021-03-16T06:21:47,782 writing requirements to damona.egg-info/requires.txt 2021-03-16T06:21:47,784 writing entry points to damona.egg-info/entry_points.txt 2021-03-16T06:21:47,800 reading manifest file 'damona.egg-info/SOURCES.txt' 2021-03-16T06:21:47,807 reading manifest template 'MANIFEST.in' 2021-03-16T06:21:47,810 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-03-16T06:21:47,812 warning: no previously-included files matching '*pyc' found under directory '*' 2021-03-16T06:21:47,829 writing manifest file 'damona.egg-info/SOURCES.txt' 2021-03-16T06:21:47,832 Copying damona.egg-info to build/bdist.linux-armv7l/wheel/damona-0.5.0-py3.5.egg-info 2021-03-16T06:21:47,857 running install_scripts 2021-03-16T06:21:47,965 creating build/bdist.linux-armv7l/wheel/damona-0.5.0.dist-info/WHEEL 2021-03-16T06:21:48,425 Building wheel for damona (setup.py): finished with status 'done' 2021-03-16T06:21:48,430 Created wheel for damona: filename=damona-0.5.0-py3-none-any.whl size=68041 sha256=2b105c2097bf8572e7d57f7b842123852413d4d1266886b21d4f1e94b0d25109 2021-03-16T06:21:48,430 Stored in directory: /tmp/pip-ephem-wheel-cache-1gg042rp/wheels/f9/c0/e1/f7d0264c7e5753b2d35f63a5c87d77134edac7546c0b106b3c 2021-03-16T06:21:48,452 Successfully built damona 2021-03-16T06:21:48,587 Removed build tracker: '/tmp/pip-req-tracker-z8oknmmd'