2021-03-16T06:35:43,626 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-03-16T06:35:44,319 Created temporary directory: /tmp/pip-ephem-wheel-cache-klztdbsi 2021-03-16T06:35:44,323 Created temporary directory: /tmp/pip-req-tracker-y3_my76o 2021-03-16T06:35:44,324 Initialized build tracking at /tmp/pip-req-tracker-y3_my76o 2021-03-16T06:35:44,325 Created build tracker: /tmp/pip-req-tracker-y3_my76o 2021-03-16T06:35:44,325 Entered build tracker: /tmp/pip-req-tracker-y3_my76o 2021-03-16T06:35:44,327 Created temporary directory: /tmp/pip-wheel-sycii7zc 2021-03-16T06:35:44,400 1 location(s) to search for versions of cluster-vcf-records: 2021-03-16T06:35:44,400 * https://pypi.org/simple/cluster-vcf-records/ 2021-03-16T06:35:44,400 Fetching project page and analyzing links: https://pypi.org/simple/cluster-vcf-records/ 2021-03-16T06:35:44,403 Getting page https://pypi.org/simple/cluster-vcf-records/ 2021-03-16T06:35:44,407 Found index url https://pypi.org/simple 2021-03-16T06:35:44,761 Found link https://files.pythonhosted.org/packages/d4/d6/3734f0c79f2dadbfaa33e4275aa95fbf52274813912478c11ac4d930bee2/cluster_vcf_records-0.0.1.tar.gz#sha256=86cc8c67ed4322c02192b8b4aa650b62c83f47659585f208e2716f97a86a77e0 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.0.1 2021-03-16T06:35:44,763 Found link https://files.pythonhosted.org/packages/07/d6/5ae0d95aec080f0f52e27c82feae8249fd06a8c171e966608379810eaf39/cluster_vcf_records-0.0.2.tar.gz#sha256=364801fa48862cc1fe588ff75e1edc516ccbc5a9648b445ffbead4ca544fd0d9 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.0.2 2021-03-16T06:35:44,764 Found link https://files.pythonhosted.org/packages/13/ff/71d7571094b3e073094a7bbe049155a8fa4b563c227b2ed3d1b4fd8a96d8/cluster_vcf_records-0.1.0.tar.gz#sha256=f6aa7c5bad77cb8563bc5752982fef230955ec46675120412d37158ababe8395 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.1.0 2021-03-16T06:35:44,765 Found link https://files.pythonhosted.org/packages/e3/5f/3088a036d0009fdaa8a2eb1418f5d4044047b177957c05d0c7a100e30947/cluster_vcf_records-0.1.1.tar.gz#sha256=6c7f3bcf1aab0b3827392255887abd7aa62f5d0dc2135acafce69589f10152cf (from https://pypi.org/simple/cluster-vcf-records/), version: 0.1.1 2021-03-16T06:35:44,766 Found link https://files.pythonhosted.org/packages/b0/fd/0a4240bbde2c9723d691e8442979b0e06e5370df76cfc32fb520e9ae8c85/cluster_vcf_records-0.2.0.tar.gz#sha256=711cda817534505d3f51be5d06430809c71e8f3d2cfd91c0d99598da481bfebc (from https://pypi.org/simple/cluster-vcf-records/), version: 0.2.0 2021-03-16T06:35:44,767 Found link https://files.pythonhosted.org/packages/b7/77/7be4d17a9e2b7b858c37df6a17bb9101eb010871c8cb093b7a15e55f264c/cluster_vcf_records-0.3.0.tar.gz#sha256=7f40e2bc217252a9a88a0ce8f9c09bc4ddb67dbe059cf358a64dc23976d9c80e (from https://pypi.org/simple/cluster-vcf-records/), version: 0.3.0 2021-03-16T06:35:44,768 Found link https://files.pythonhosted.org/packages/15/33/d52a1e64629ea30992734b4e90975a49aa500e1a88e6673bc3db8e03b9b8/cluster_vcf_records-0.4.0.tar.gz#sha256=8b45e1d01b18290464150925a38f32fd422ccca6c0646a9e23f1ffe3d68ca9c6 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.4.0 2021-03-16T06:35:44,769 Found link https://files.pythonhosted.org/packages/44/44/8b5fb3c47e9dea72312d939835a6b5cc722dc43e2b44f8fad9524a30d191/cluster_vcf_records-0.5.0.tar.gz#sha256=ca35bc4dee213fdcf760f3e29db1caf93f671c91e9660f387acaf0cbc03f0f52 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.5.0 2021-03-16T06:35:44,770 Found link https://files.pythonhosted.org/packages/c9/d2/3f0e93e234ec0ada5f478541a37ef906f7e195a5f88682ea3837d6bfe4f1/cluster_vcf_records-0.6.0.tar.gz#sha256=dd957b2a6bf7a9d3b39025d68acbc6424da7bf9a4780ff224288fe350c5e978e (from https://pypi.org/simple/cluster-vcf-records/), version: 0.6.0 2021-03-16T06:35:44,771 Found link 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https://files.pythonhosted.org/packages/14/32/d1255812dae7b551262654f607066bbefc317b257da455ee7d076b8c2f97/cluster_vcf_records-0.9.1.tar.gz#sha256=6b666785977c520a1085b7eb98c9001a6b2db6c97f88c32569266477873618e2 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.9.1 2021-03-16T06:35:44,774 Found link https://files.pythonhosted.org/packages/e4/b3/396dafc9a5d836c117d583e59d82adea05f4d0475fddbd2cf6673fb471b3/cluster_vcf_records-0.9.2.tar.gz#sha256=9716b4c6455507f60f3ca05ee5b004fe0668447e57505c608637163af44b07d3 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.9.2 2021-03-16T06:35:44,775 Found link https://files.pythonhosted.org/packages/62/70/651131ff130fe09097850fb2c29ace1850d61e9e6ded694fd056fe437707/cluster_vcf_records-0.10.0.tar.gz#sha256=2e7626489c7e68eb347551b21a9259c54dd4d95fdc2d5c2e6faaf3bf675c510a (from https://pypi.org/simple/cluster-vcf-records/), version: 0.10.0 2021-03-16T06:35:44,776 Found link 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https://files.pythonhosted.org/packages/b4/99/417301de923ebd3ee2e43f19065b1ca74f7c938f5b221a9128b154c2ba49/cluster_vcf_records-0.11.0.tar.gz#sha256=5739559ca9e450e3561a6d44d09c92c5c8fbd877aae80a6ce5cf180a0ef13e97 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.11.0 2021-03-16T06:35:44,780 Found link https://files.pythonhosted.org/packages/38/1c/bad8897f068b01f835d11c7a3b99ba8d50e39d7008bc488945f248ad31d8/cluster_vcf_records-0.11.1.tar.gz#sha256=49140120a495a15cb503c6e0136a2875507b927c6bd11df498be0a100058f5cb (from https://pypi.org/simple/cluster-vcf-records/), version: 0.11.1 2021-03-16T06:35:44,781 Found link https://files.pythonhosted.org/packages/67/87/3e5da6c41fc1b0de4e54bcdbed8f1f9f0d5e2b18c4a316b1b60d967d7b06/cluster_vcf_records-0.12.0.tar.gz#sha256=3871924d34ab1da01e4ffebdc9240679eff7d4e9fd9249b701db5042c4c46432 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.12.0 2021-03-16T06:35:44,782 Found link https://files.pythonhosted.org/packages/82/7b/63bd64b438464d011bf26a3303a931480e4fefa0550a249990b560f18782/cluster_vcf_records-0.12.1.tar.gz#sha256=d8d8d4585a41e375bc53406e6400805c3c1da2a88c96d4d7c00ed55ac1277e88 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.12.1 2021-03-16T06:35:44,783 Found link https://files.pythonhosted.org/packages/c3/c2/b6bb2126318ce4da477ba936d4998ef8aa4ec9e6311770b5557c2b0a3a35/cluster_vcf_records-0.12.2.tar.gz#sha256=10741b6c0f96aa55415b4125008fdfe14d6084705a19f96a2365806328e7eb65 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.12.2 2021-03-16T06:35:44,784 Found link https://files.pythonhosted.org/packages/67/56/291c0ec5c6dc4308b079819161594225cdf2dbb88f8af84dcdc33fa2357a/cluster_vcf_records-0.12.3.tar.gz#sha256=45f02153262b1020959180d08893ad50aa80e1b6a72b14a716e6c19bae5cde12 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.12.3 2021-03-16T06:35:44,785 Found link https://files.pythonhosted.org/packages/5e/4b/2b26fb2bcd744f4d5c07529de9a6221117d4b013434a4c5f7273ba87845b/cluster_vcf_records-0.12.4.tar.gz#sha256=116032bab09c2205ad7fba47e6181b52a383973d6d065e207046de56ce347fa9 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.12.4 2021-03-16T06:35:44,785 Found link https://files.pythonhosted.org/packages/36/b1/a43fd8c9e7e2040d1ed335038773273c41a4bf94cc2563cbb4f44eb25858/cluster_vcf_records-0.13.0.tar.gz#sha256=c863a0415b5a071fafd88b21d6b378fb96cf478ee73a5dafecd5b8f25c6dbb7a (from https://pypi.org/simple/cluster-vcf-records/), version: 0.13.0 2021-03-16T06:35:44,786 Found link https://files.pythonhosted.org/packages/ae/62/61d1b97ac6e0081ae18d23ae343ab3804cb6ad24da75776c85c63bd24f1e/cluster_vcf_records-0.13.1.tar.gz#sha256=4fb16ae3c8495168c911adc51e9d33fad385995ab69e1b41d3ba4ab3e6ab1d35 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.13.1 2021-03-16T06:35:44,787 Found link https://files.pythonhosted.org/packages/74/36/4285d072b4ac0d16ec278b1fe386ced0313cd8888fa90d26d2562b58f049/cluster_vcf_records-0.13.2.tar.gz#sha256=ba587de2a5b8330d9cd4ae904f926eb7af6585f340fba45e3c90b37d9a2045b1 (from https://pypi.org/simple/cluster-vcf-records/), version: 0.13.2 2021-03-16T06:35:44,831 Given no hashes to check 1 links for project 'cluster-vcf-records': discarding no candidates 2021-03-16T06:35:44,866 Collecting cluster-vcf-records==0.13.2 2021-03-16T06:35:44,869 Created temporary directory: /tmp/pip-unpack-40eehn9s 2021-03-16T06:35:45,097 Downloading cluster_vcf_records-0.13.2.tar.gz (36 kB) 2021-03-16T06:35:45,303 Added cluster-vcf-records==0.13.2 from https://files.pythonhosted.org/packages/74/36/4285d072b4ac0d16ec278b1fe386ced0313cd8888fa90d26d2562b58f049/cluster_vcf_records-0.13.2.tar.gz#sha256=ba587de2a5b8330d9cd4ae904f926eb7af6585f340fba45e3c90b37d9a2045b1 to build tracker '/tmp/pip-req-tracker-y3_my76o' 2021-03-16T06:35:45,306 Running setup.py (path:/tmp/pip-wheel-sycii7zc/cluster-vcf-records_21d7bb5cbe1b41c085b5befd5b1986c7/setup.py) egg_info for package cluster-vcf-records 2021-03-16T06:35:45,308 Created temporary directory: /tmp/pip-pip-egg-info-8immampr 2021-03-16T06:35:45,308 Running command python setup.py egg_info 2021-03-16T06:35:47,490 running egg_info 2021-03-16T06:35:47,496 creating /tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info 2021-03-16T06:35:47,500 writing /tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info/PKG-INFO 2021-03-16T06:35:47,505 writing dependency_links to /tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info/dependency_links.txt 2021-03-16T06:35:47,507 writing top-level names to /tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info/top_level.txt 2021-03-16T06:35:47,510 writing requirements to /tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info/requires.txt 2021-03-16T06:35:47,514 writing manifest file '/tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info/SOURCES.txt' 2021-03-16T06:35:47,888 reading manifest file '/tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info/SOURCES.txt' 2021-03-16T06:35:47,892 reading manifest template 'MANIFEST.in' 2021-03-16T06:35:47,900 writing manifest file '/tmp/pip-pip-egg-info-8immampr/cluster_vcf_records.egg-info/SOURCES.txt' 2021-03-16T06:35:48,034 Source in /tmp/pip-wheel-sycii7zc/cluster-vcf-records_21d7bb5cbe1b41c085b5befd5b1986c7 has version 0.13.2, which satisfies requirement cluster-vcf-records==0.13.2 from https://files.pythonhosted.org/packages/74/36/4285d072b4ac0d16ec278b1fe386ced0313cd8888fa90d26d2562b58f049/cluster_vcf_records-0.13.2.tar.gz#sha256=ba587de2a5b8330d9cd4ae904f926eb7af6585f340fba45e3c90b37d9a2045b1 2021-03-16T06:35:48,036 Removed cluster-vcf-records==0.13.2 from https://files.pythonhosted.org/packages/74/36/4285d072b4ac0d16ec278b1fe386ced0313cd8888fa90d26d2562b58f049/cluster_vcf_records-0.13.2.tar.gz#sha256=ba587de2a5b8330d9cd4ae904f926eb7af6585f340fba45e3c90b37d9a2045b1 from build tracker '/tmp/pip-req-tracker-y3_my76o' 2021-03-16T06:35:48,044 Created temporary directory: /tmp/pip-unpack-qeqrrip3 2021-03-16T06:35:48,045 Building wheels for collected packages: cluster-vcf-records 2021-03-16T06:35:48,053 Created temporary directory: /tmp/pip-wheel-8v_mhdvc 2021-03-16T06:35:48,055 Building wheel for cluster-vcf-records (setup.py): started 2021-03-16T06:35:48,055 Destination directory: /tmp/pip-wheel-8v_mhdvc 2021-03-16T06:35:48,056 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-sycii7zc/cluster-vcf-records_21d7bb5cbe1b41c085b5befd5b1986c7/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-sycii7zc/cluster-vcf-records_21d7bb5cbe1b41c085b5befd5b1986c7/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8v_mhdvc 2021-03-16T06:35:50,259 running bdist_wheel 2021-03-16T06:35:50,275 running build 2021-03-16T06:35:50,276 running build_py 2021-03-16T06:35:50,621 creating build 2021-03-16T06:35:50,621 creating build/lib 2021-03-16T06:35:50,623 creating build/lib/cluster_vcf_records 2021-03-16T06:35:50,626 copying cluster_vcf_records/vcf_clusterer.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,632 copying cluster_vcf_records/vcf_record_cluster.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,638 copying cluster_vcf_records/allele_combinations.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,642 copying cluster_vcf_records/__init__.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,647 copying cluster_vcf_records/vcf_file_read.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,653 copying cluster_vcf_records/utils.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,660 copying cluster_vcf_records/variant_tracking.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,669 copying cluster_vcf_records/vcf_merge.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,675 copying cluster_vcf_records/vcf_record.py -> build/lib/cluster_vcf_records 2021-03-16T06:35:50,686 creating build/lib/tests 2021-03-16T06:35:50,689 copying tests/test_vcf_merge.py -> build/lib/tests 2021-03-16T06:35:50,694 copying tests/test_vcf_record_cluster.py -> build/lib/tests 2021-03-16T06:35:50,700 copying tests/__init__.py -> build/lib/tests 2021-03-16T06:35:50,704 copying tests/test_variant_tracking.py -> build/lib/tests 2021-03-16T06:35:50,709 copying tests/test_utils.py -> build/lib/tests 2021-03-16T06:35:50,715 copying tests/test_vcf_record.py -> build/lib/tests 2021-03-16T06:35:50,724 copying tests/test_vcf_clusterer.py -> build/lib/tests 2021-03-16T06:35:50,731 copying tests/test_allele_combinations.py -> build/lib/tests 2021-03-16T06:35:50,737 copying tests/test_vcf_file_read.py -> build/lib/tests 2021-03-16T06:35:50,757 installing to build/bdist.linux-armv7l/wheel 2021-03-16T06:35:50,758 running install 2021-03-16T06:35:50,760 running install_lib 2021-03-16T06:35:50,767 creating build/bdist.linux-armv7l 2021-03-16T06:35:50,768 creating build/bdist.linux-armv7l/wheel 2021-03-16T06:35:50,772 creating build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,774 copying build/lib/cluster_vcf_records/vcf_clusterer.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,780 copying build/lib/cluster_vcf_records/vcf_record_cluster.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,785 copying build/lib/cluster_vcf_records/allele_combinations.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,790 copying build/lib/cluster_vcf_records/__init__.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,795 copying build/lib/cluster_vcf_records/vcf_file_read.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,802 copying build/lib/cluster_vcf_records/utils.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,808 copying build/lib/cluster_vcf_records/variant_tracking.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,817 copying build/lib/cluster_vcf_records/vcf_merge.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,822 copying build/lib/cluster_vcf_records/vcf_record.py -> build/bdist.linux-armv7l/wheel/cluster_vcf_records 2021-03-16T06:35:50,832 creating build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,834 copying build/lib/tests/test_vcf_merge.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,841 copying build/lib/tests/test_vcf_record_cluster.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,848 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,853 copying build/lib/tests/test_variant_tracking.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,860 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,866 copying build/lib/tests/test_vcf_record.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,875 copying build/lib/tests/test_vcf_clusterer.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,882 copying build/lib/tests/test_allele_combinations.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,888 copying build/lib/tests/test_vcf_file_read.py -> build/bdist.linux-armv7l/wheel/tests 2021-03-16T06:35:50,893 running install_egg_info 2021-03-16T06:35:50,948 running egg_info 2021-03-16T06:35:50,949 writing dependency_links to cluster_vcf_records.egg-info/dependency_links.txt 2021-03-16T06:35:50,952 writing requirements to cluster_vcf_records.egg-info/requires.txt 2021-03-16T06:35:50,954 writing cluster_vcf_records.egg-info/PKG-INFO 2021-03-16T06:35:50,959 writing top-level names to cluster_vcf_records.egg-info/top_level.txt 2021-03-16T06:35:50,971 reading manifest file 'cluster_vcf_records.egg-info/SOURCES.txt' 2021-03-16T06:35:50,975 reading manifest template 'MANIFEST.in' 2021-03-16T06:35:50,984 writing manifest file 'cluster_vcf_records.egg-info/SOURCES.txt' 2021-03-16T06:35:50,987 Copying cluster_vcf_records.egg-info to build/bdist.linux-armv7l/wheel/cluster_vcf_records-0.13.2-py3.5.egg-info 2021-03-16T06:35:51,012 running install_scripts 2021-03-16T06:35:51,211 creating build/bdist.linux-armv7l/wheel/cluster_vcf_records-0.13.2.dist-info/WHEEL 2021-03-16T06:35:51,501 Building wheel for cluster-vcf-records (setup.py): finished with status 'done' 2021-03-16T06:35:51,506 Created wheel for cluster-vcf-records: filename=cluster_vcf_records-0.13.2-py3-none-any.whl size=44588 sha256=5895d24e798255aaf40d21c9e7c69422ffdbecf475e8878942f55cf1bb62eee4 2021-03-16T06:35:51,507 Stored in directory: /tmp/pip-ephem-wheel-cache-klztdbsi/wheels/b0/48/42/484daad591525e0b913e46583edc47fc67aaf0025ad49c4d40 2021-03-16T06:35:51,525 Successfully built cluster-vcf-records 2021-03-16T06:35:51,538 Removed build tracker: '/tmp/pip-req-tracker-y3_my76o'