2021-03-16T10:02:28,926 Created temporary directory: /tmp/pip-ephem-wheel-cache-0976pqid
2021-03-16T10:02:28,929 Created temporary directory: /tmp/pip-req-tracker-6xw2cqg2
2021-03-16T10:02:28,930 Initialized build tracking at /tmp/pip-req-tracker-6xw2cqg2
2021-03-16T10:02:28,930 Created build tracker: /tmp/pip-req-tracker-6xw2cqg2
2021-03-16T10:02:28,930 Entered build tracker: /tmp/pip-req-tracker-6xw2cqg2
2021-03-16T10:02:28,931 Created temporary directory: /tmp/pip-wheel-547011gn
2021-03-16T10:02:28,961 1 location(s) to search for versions of cytohmm:
2021-03-16T10:02:28,961 * https://pypi.org/simple/cytohmm/
2021-03-16T10:02:28,962 Fetching project page and analyzing links: https://pypi.org/simple/cytohmm/
2021-03-16T10:02:28,962 Getting page https://pypi.org/simple/cytohmm/
2021-03-16T10:02:28,964 Found index url https://pypi.org/simple
2021-03-16T10:02:29,052   Found link https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e (from https://pypi.org/simple/cytohmm/), version: 0.0.1
2021-03-16T10:02:29,053   Found link https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 (from https://pypi.org/simple/cytohmm/), version: 0.0.2
2021-03-16T10:02:29,066 Given no hashes to check 1 links for project 'cytohmm': discarding no candidates
2021-03-16T10:02:29,081 Collecting cytohmm==0.0.1
2021-03-16T10:02:29,083   Created temporary directory: /tmp/pip-unpack-_2p7jjll
2021-03-16T10:02:29,125   Downloading cytohmm-0.0.1.tar.gz (143 kB)
2021-03-16T10:02:29,249   Added cytohmm==0.0.1 from https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e to build tracker '/tmp/pip-req-tracker-6xw2cqg2'
2021-03-16T10:02:29,250     Running setup.py (path:/tmp/pip-wheel-547011gn/cytohmm_eefd4c782c2e4088a7895ed27dfa138f/setup.py) egg_info for package cytohmm
2021-03-16T10:02:29,251     Created temporary directory: /tmp/pip-pip-egg-info-4e8aftfu
2021-03-16T10:02:29,251     Running command python setup.py egg_info
2021-03-16T10:02:31,277     running egg_info
2021-03-16T10:02:31,280     creating /tmp/pip-pip-egg-info-4e8aftfu/cytohmm.egg-info
2021-03-16T10:02:31,281     writing /tmp/pip-pip-egg-info-4e8aftfu/cytohmm.egg-info/PKG-INFO
2021-03-16T10:02:31,284     writing dependency_links to /tmp/pip-pip-egg-info-4e8aftfu/cytohmm.egg-info/dependency_links.txt
2021-03-16T10:02:31,287     writing top-level names to /tmp/pip-pip-egg-info-4e8aftfu/cytohmm.egg-info/top_level.txt
2021-03-16T10:02:31,289     writing manifest file '/tmp/pip-pip-egg-info-4e8aftfu/cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:02:31,296     reading manifest file '/tmp/pip-pip-egg-info-4e8aftfu/cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:02:31,298     reading manifest template 'MANIFEST.in'
2021-03-16T10:02:31,524     writing manifest file '/tmp/pip-pip-egg-info-4e8aftfu/cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:02:31,643   Source in /tmp/pip-wheel-547011gn/cytohmm_eefd4c782c2e4088a7895ed27dfa138f has version 0.0.1, which satisfies requirement cytohmm==0.0.1 from https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e
2021-03-16T10:02:31,644   Removed cytohmm==0.0.1 from https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e from build tracker '/tmp/pip-req-tracker-6xw2cqg2'
2021-03-16T10:02:31,648 Created temporary directory: /tmp/pip-unpack-y5n6umfk
2021-03-16T10:02:31,649 Building wheels for collected packages: cytohmm
2021-03-16T10:02:31,653   Created temporary directory: /tmp/pip-wheel-me82393t
2021-03-16T10:02:31,654   Building wheel for cytohmm (setup.py): started
2021-03-16T10:02:31,654   Destination directory: /tmp/pip-wheel-me82393t
2021-03-16T10:02:31,655   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-547011gn/cytohmm_eefd4c782c2e4088a7895ed27dfa138f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-547011gn/cytohmm_eefd4c782c2e4088a7895ed27dfa138f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-me82393t
2021-03-16T10:02:33,586   running bdist_wheel
2021-03-16T10:02:33,591   running build
2021-03-16T10:02:33,591   running build_ext
2021-03-16T10:02:33,596   building 'cytohmm.markov_chain' extension
2021-03-16T10:02:33,597   creating build
2021-03-16T10:02:33,597   creating build/temp.linux-armv7l-3.7
2021-03-16T10:02:33,598   creating build/temp.linux-armv7l-3.7/src
2021-03-16T10:02:33,599   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/markov_chain.c -o build/temp.linux-armv7l-3.7/src/markov_chain.o
2021-03-16T10:02:33,972   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-03-16T10:02:33,972                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-03-16T10:02:33,972                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-03-16T10:02:33,973                    from src/markov_chain.c:632:
2021-03-16T10:02:33,973   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-03-16T10:02:33,973    #warning "Using deprecated NumPy API, disable it with " \
2021-03-16T10:02:33,973     ^~~~~~~
2021-03-16T10:02:44,211   creating build/lib.linux-armv7l-3.7
2021-03-16T10:02:44,212   creating build/lib.linux-armv7l-3.7/cytohmm
2021-03-16T10:02:44,213   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/markov_chain.o -o build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so
2021-03-16T10:02:44,370   building 'cytohmm.likelihood' extension
2021-03-16T10:02:44,371   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/likelihood.c -o build/temp.linux-armv7l-3.7/src/likelihood.o
2021-03-16T10:02:44,737   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-03-16T10:02:44,738                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-03-16T10:02:44,738                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-03-16T10:02:44,738                    from src/likelihood.c:632:
2021-03-16T10:02:44,739   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-03-16T10:02:44,739    #warning "Using deprecated NumPy API, disable it with " \
2021-03-16T10:02:44,739     ^~~~~~~
2021-03-16T10:02:51,915   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/likelihood.o -o build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so
2021-03-16T10:02:52,066   building 'cytohmm.sequence_segmenter' extension
2021-03-16T10:02:52,066   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/sequence_segmenter.c -o build/temp.linux-armv7l-3.7/src/sequence_segmenter.o
2021-03-16T10:02:57,384   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/sequence_segmenter.o -o build/lib.linux-armv7l-3.7/cytohmm/sequence_segmenter.cpython-37m-arm-linux-gnueabihf.so
2021-03-16T10:02:57,536   installing to build/bdist.linux-armv7l/wheel
2021-03-16T10:02:57,536   running install
2021-03-16T10:02:57,537   running install_lib
2021-03-16T10:02:57,541   creating build/bdist.linux-armv7l
2021-03-16T10:02:57,542   creating build/bdist.linux-armv7l/wheel
2021-03-16T10:02:57,544   creating build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:02:57,545   copying build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:02:57,564   copying build/lib.linux-armv7l-3.7/cytohmm/sequence_segmenter.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:02:57,573   copying build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:02:57,584   running install_egg_info
2021-03-16T10:02:57,610   running egg_info
2021-03-16T10:02:57,611   writing cytohmm.egg-info/PKG-INFO
2021-03-16T10:02:57,614   writing dependency_links to cytohmm.egg-info/dependency_links.txt
2021-03-16T10:02:57,617   writing top-level names to cytohmm.egg-info/top_level.txt
2021-03-16T10:02:57,622   reading manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:02:57,626   reading manifest template 'MANIFEST.in'
2021-03-16T10:02:57,639   writing manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:02:57,641   Copying cytohmm.egg-info to build/bdist.linux-armv7l/wheel/cytohmm-0.0.1-py3.7.egg-info
2021-03-16T10:02:57,656   running install_scripts
2021-03-16T10:02:57,701   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-03-16T10:02:57,708   creating build/bdist.linux-armv7l/wheel/cytohmm-0.0.1.dist-info/WHEEL
2021-03-16T10:02:57,712   creating '/tmp/pip-wheel-me82393t/cytohmm-0.0.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-03-16T10:02:57,797   adding 'cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so'
2021-03-16T10:02:57,903   adding 'cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so'
2021-03-16T10:02:57,971   adding 'cytohmm/sequence_segmenter.cpython-37m-arm-linux-gnueabihf.so'
2021-03-16T10:02:57,975   adding 'cytohmm-0.0.1.dist-info/LICENSE'
2021-03-16T10:02:57,977   adding 'cytohmm-0.0.1.dist-info/METADATA'
2021-03-16T10:02:57,978   adding 'cytohmm-0.0.1.dist-info/WHEEL'
2021-03-16T10:02:57,980   adding 'cytohmm-0.0.1.dist-info/top_level.txt'
2021-03-16T10:02:57,980   adding 'cytohmm-0.0.1.dist-info/RECORD'
2021-03-16T10:02:57,989   removing build/bdist.linux-armv7l/wheel
2021-03-16T10:02:58,124   Building wheel for cytohmm (setup.py): finished with status 'done'
2021-03-16T10:02:58,131   Created wheel for cytohmm: filename=cytohmm-0.0.1-cp37-cp37m-linux_armv7l.whl size=463827 sha256=d82817af694cbd46c15dda953b8670720a48c8afc3a01f777ca3d2bb364f37c0
2021-03-16T10:02:58,132   Stored in directory: /tmp/pip-ephem-wheel-cache-0976pqid/wheels/b3/e2/04/931c1cc40f641d780819c4b42a7359c2ec4b81b72aa6ce38a8
2021-03-16T10:02:58,142 Successfully built cytohmm
2021-03-16T10:02:58,161 Removed build tracker: '/tmp/pip-req-tracker-6xw2cqg2'