2021-03-16T10:03:52,304 Created temporary directory: /tmp/pip-ephem-wheel-cache-wfuzk_o5
2021-03-16T10:03:52,307 Created temporary directory: /tmp/pip-req-tracker-7txqge78
2021-03-16T10:03:52,308 Initialized build tracking at /tmp/pip-req-tracker-7txqge78
2021-03-16T10:03:52,308 Created build tracker: /tmp/pip-req-tracker-7txqge78
2021-03-16T10:03:52,308 Entered build tracker: /tmp/pip-req-tracker-7txqge78
2021-03-16T10:03:52,309 Created temporary directory: /tmp/pip-wheel-cyga9li6
2021-03-16T10:03:52,340 1 location(s) to search for versions of cytohmm:
2021-03-16T10:03:52,340 * https://pypi.org/simple/cytohmm/
2021-03-16T10:03:52,340 Fetching project page and analyzing links: https://pypi.org/simple/cytohmm/
2021-03-16T10:03:52,340 Getting page https://pypi.org/simple/cytohmm/
2021-03-16T10:03:52,342 Found index url https://pypi.org/simple
2021-03-16T10:03:52,432   Found link https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e (from https://pypi.org/simple/cytohmm/), version: 0.0.1
2021-03-16T10:03:52,432   Found link https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 (from https://pypi.org/simple/cytohmm/), version: 0.0.2
2021-03-16T10:03:52,446 Given no hashes to check 1 links for project 'cytohmm': discarding no candidates
2021-03-16T10:03:52,460 Collecting cytohmm==0.0.2
2021-03-16T10:03:52,462   Created temporary directory: /tmp/pip-unpack-gboijwgs
2021-03-16T10:03:52,504   Downloading cytohmm-0.0.2.tar.gz (143 kB)
2021-03-16T10:03:52,625   Added cytohmm==0.0.2 from https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 to build tracker '/tmp/pip-req-tracker-7txqge78'
2021-03-16T10:03:52,626     Running setup.py (path:/tmp/pip-wheel-cyga9li6/cytohmm_daf5a3779bc547ba8d244085f464b710/setup.py) egg_info for package cytohmm
2021-03-16T10:03:52,627     Created temporary directory: /tmp/pip-pip-egg-info-c154uu37
2021-03-16T10:03:52,627     Running command python setup.py egg_info
2021-03-16T10:03:54,874     running egg_info
2021-03-16T10:03:54,877     creating /tmp/pip-pip-egg-info-c154uu37/cytohmm.egg-info
2021-03-16T10:03:54,879     writing /tmp/pip-pip-egg-info-c154uu37/cytohmm.egg-info/PKG-INFO
2021-03-16T10:03:54,883     writing dependency_links to /tmp/pip-pip-egg-info-c154uu37/cytohmm.egg-info/dependency_links.txt
2021-03-16T10:03:54,886     writing top-level names to /tmp/pip-pip-egg-info-c154uu37/cytohmm.egg-info/top_level.txt
2021-03-16T10:03:54,888     writing manifest file '/tmp/pip-pip-egg-info-c154uu37/cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:03:54,896     reading manifest file '/tmp/pip-pip-egg-info-c154uu37/cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:03:54,898     reading manifest template 'MANIFEST.in'
2021-03-16T10:03:54,912     writing manifest file '/tmp/pip-pip-egg-info-c154uu37/cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:03:55,033   Source in /tmp/pip-wheel-cyga9li6/cytohmm_daf5a3779bc547ba8d244085f464b710 has version 0.0.2, which satisfies requirement cytohmm==0.0.2 from https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32
2021-03-16T10:03:55,034   Removed cytohmm==0.0.2 from https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 from build tracker '/tmp/pip-req-tracker-7txqge78'
2021-03-16T10:03:55,038 Created temporary directory: /tmp/pip-unpack-fe_snp32
2021-03-16T10:03:55,039 Building wheels for collected packages: cytohmm
2021-03-16T10:03:55,043   Created temporary directory: /tmp/pip-wheel-ldv_018h
2021-03-16T10:03:55,044   Building wheel for cytohmm (setup.py): started
2021-03-16T10:03:55,044   Destination directory: /tmp/pip-wheel-ldv_018h
2021-03-16T10:03:55,044   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cyga9li6/cytohmm_daf5a3779bc547ba8d244085f464b710/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cyga9li6/cytohmm_daf5a3779bc547ba8d244085f464b710/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ldv_018h
2021-03-16T10:03:56,993   running bdist_wheel
2021-03-16T10:03:56,998   running build
2021-03-16T10:03:56,998   running build_ext
2021-03-16T10:03:57,004   building 'cytohmm.markov_chain' extension
2021-03-16T10:03:57,004   creating build
2021-03-16T10:03:57,005   creating build/temp.linux-armv7l-3.7
2021-03-16T10:03:57,005   creating build/temp.linux-armv7l-3.7/src
2021-03-16T10:03:57,006   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/markov_chain.c -o build/temp.linux-armv7l-3.7/src/markov_chain.o
2021-03-16T10:03:57,355   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-03-16T10:03:57,356                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-03-16T10:03:57,356                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-03-16T10:03:57,356                    from src/markov_chain.c:632:
2021-03-16T10:03:57,357   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-03-16T10:03:57,357    #warning "Using deprecated NumPy API, disable it with " \
2021-03-16T10:03:57,357     ^~~~~~~
2021-03-16T10:04:07,634   creating build/lib.linux-armv7l-3.7
2021-03-16T10:04:07,635   creating build/lib.linux-armv7l-3.7/cytohmm
2021-03-16T10:04:07,635   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/markov_chain.o -o build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so
2021-03-16T10:04:07,800   building 'cytohmm.likelihood' extension
2021-03-16T10:04:07,801   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/likelihood.c -o build/temp.linux-armv7l-3.7/src/likelihood.o
2021-03-16T10:04:08,150   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-03-16T10:04:08,151                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-03-16T10:04:08,151                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-03-16T10:04:08,151                    from src/likelihood.c:632:
2021-03-16T10:04:08,151   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-03-16T10:04:08,152    #warning "Using deprecated NumPy API, disable it with " \
2021-03-16T10:04:08,152     ^~~~~~~
2021-03-16T10:04:15,335   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/likelihood.o -o build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so
2021-03-16T10:04:15,485   building 'cytohmm.sequence_segmenter' extension
2021-03-16T10:04:15,485   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/sequence_segmenter.c -o build/temp.linux-armv7l-3.7/src/sequence_segmenter.o
2021-03-16T10:04:20,740   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/sequence_segmenter.o -o build/lib.linux-armv7l-3.7/cytohmm/sequence_segmenter.cpython-37m-arm-linux-gnueabihf.so
2021-03-16T10:04:20,886   installing to build/bdist.linux-armv7l/wheel
2021-03-16T10:04:20,886   running install
2021-03-16T10:04:20,887   running install_lib
2021-03-16T10:04:20,893   creating build/bdist.linux-armv7l
2021-03-16T10:04:20,894   creating build/bdist.linux-armv7l/wheel
2021-03-16T10:04:20,896   creating build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:04:20,897   copying build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:04:20,915   copying build/lib.linux-armv7l-3.7/cytohmm/sequence_segmenter.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:04:20,925   copying build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-16T10:04:20,938   running install_egg_info
2021-03-16T10:04:20,965   running egg_info
2021-03-16T10:04:20,966   writing cytohmm.egg-info/PKG-INFO
2021-03-16T10:04:20,969   writing dependency_links to cytohmm.egg-info/dependency_links.txt
2021-03-16T10:04:20,970   writing top-level names to cytohmm.egg-info/top_level.txt
2021-03-16T10:04:20,975   reading manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:04:20,978   reading manifest template 'MANIFEST.in'
2021-03-16T10:04:20,990   writing manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-03-16T10:04:20,991   Copying cytohmm.egg-info to build/bdist.linux-armv7l/wheel/cytohmm-0.0.2-py3.7.egg-info
2021-03-16T10:04:21,004   running install_scripts
2021-03-16T10:04:21,051   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-03-16T10:04:21,057   creating build/bdist.linux-armv7l/wheel/cytohmm-0.0.2.dist-info/WHEEL
2021-03-16T10:04:21,060   creating '/tmp/pip-wheel-ldv_018h/cytohmm-0.0.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-03-16T10:04:21,148   adding 'cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so'
2021-03-16T10:04:21,256   adding 'cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so'
2021-03-16T10:04:21,327   adding 'cytohmm/sequence_segmenter.cpython-37m-arm-linux-gnueabihf.so'
2021-03-16T10:04:21,331   adding 'cytohmm-0.0.2.dist-info/LICENSE'
2021-03-16T10:04:21,332   adding 'cytohmm-0.0.2.dist-info/METADATA'
2021-03-16T10:04:21,334   adding 'cytohmm-0.0.2.dist-info/WHEEL'
2021-03-16T10:04:21,335   adding 'cytohmm-0.0.2.dist-info/top_level.txt'
2021-03-16T10:04:21,335   adding 'cytohmm-0.0.2.dist-info/RECORD'
2021-03-16T10:04:21,344   removing build/bdist.linux-armv7l/wheel
2021-03-16T10:04:21,480   Building wheel for cytohmm (setup.py): finished with status 'done'
2021-03-16T10:04:21,488   Created wheel for cytohmm: filename=cytohmm-0.0.2-cp37-cp37m-linux_armv7l.whl size=463895 sha256=fddfb34d38ab528566625b75e4d332e1710fbbe2f8f73f1ef8885dbb93a8aa24
2021-03-16T10:04:21,488   Stored in directory: /tmp/pip-ephem-wheel-cache-wfuzk_o5/wheels/bc/f9/9a/866a9c8fc38f162ad9f32dbee6b02edf8f75796450149bee6e
2021-03-16T10:04:21,500 Successfully built cytohmm
2021-03-16T10:04:21,526 Removed build tracker: '/tmp/pip-req-tracker-7txqge78'