2021-03-18T19:17:18,019 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-03-18T19:17:18,701 Created temporary directory: /tmp/pip-ephem-wheel-cache-zrm00pcm 2021-03-18T19:17:18,705 Created temporary directory: /tmp/pip-req-tracker-3x4yy8bd 2021-03-18T19:17:18,706 Initialized build tracking at /tmp/pip-req-tracker-3x4yy8bd 2021-03-18T19:17:18,707 Created build tracker: /tmp/pip-req-tracker-3x4yy8bd 2021-03-18T19:17:18,707 Entered build tracker: /tmp/pip-req-tracker-3x4yy8bd 2021-03-18T19:17:18,709 Created temporary directory: /tmp/pip-wheel-2qlcnlso 2021-03-18T19:17:18,771 1 location(s) to search for versions of sequana: 2021-03-18T19:17:18,771 * https://pypi.org/simple/sequana/ 2021-03-18T19:17:18,772 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2021-03-18T19:17:18,775 Getting page https://pypi.org/simple/sequana/ 2021-03-18T19:17:18,779 Found 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https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2021-03-18T19:17:19,226 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2021-03-18T19:17:19,227 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2021-03-18T19:17:19,228 Found link https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 (from https://pypi.org/simple/sequana/), version: 0.9.4 2021-03-18T19:17:19,229 Found link https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff (from https://pypi.org/simple/sequana/), version: 0.9.5 2021-03-18T19:17:19,229 Found link https://files.pythonhosted.org/packages/2f/fc/f32fabca2937e7213b16a9feab8b536a76a67278ee5643ba78d628830457/sequana-0.9.6.tar.gz#sha256=879071711f7e9c0537b7f16614caa92e46c3683db1965070068876b0d1fb389c (from https://pypi.org/simple/sequana/), version: 0.9.6 2021-03-18T19:17:19,230 Found link https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 (from https://pypi.org/simple/sequana/), version: 0.9.7 2021-03-18T19:17:19,231 Found link https://files.pythonhosted.org/packages/02/b0/78c5e898532879ec045c7a10f8482966ae854d9ced08d75fd21679457c59/sequana-0.9.8.tar.gz#sha256=b9117d270539742cfbbd31084e20b38f856a49621a42fdc515e833b16a43787c (from https://pypi.org/simple/sequana/), version: 0.9.8 2021-03-18T19:17:19,232 Found link https://files.pythonhosted.org/packages/9c/f6/5b6a3b0b8ab58aaf058070ad05ddc2b56a47a070278c8d0751f873cd410e/sequana-0.10.0.tar.gz#sha256=611d22d8288086877f7795e1093775ac04eebfd5eb02d51aba07cfb8ee6be2b6 (from https://pypi.org/simple/sequana/), version: 0.10.0 2021-03-18T19:17:19,290 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2021-03-18T19:17:19,325 Collecting sequana==0.10.0 2021-03-18T19:17:19,329 Created temporary directory: /tmp/pip-unpack-8ctnzgqg 2021-03-18T19:17:20,135 Downloading sequana-0.10.0.tar.gz (14.3 MB) 2021-03-18T19:17:29,334 Added sequana==0.10.0 from https://files.pythonhosted.org/packages/9c/f6/5b6a3b0b8ab58aaf058070ad05ddc2b56a47a070278c8d0751f873cd410e/sequana-0.10.0.tar.gz#sha256=611d22d8288086877f7795e1093775ac04eebfd5eb02d51aba07cfb8ee6be2b6 to build tracker '/tmp/pip-req-tracker-3x4yy8bd' 2021-03-18T19:17:29,337 Running setup.py (path:/tmp/pip-wheel-2qlcnlso/sequana_f6d6996dfa6a4df699c07b7d45a08657/setup.py) egg_info for package sequana 2021-03-18T19:17:29,338 Created temporary directory: /tmp/pip-pip-egg-info-gfe29s8v 2021-03-18T19:17:29,339 Running command python setup.py egg_info 2021-03-18T19:17:32,237 running egg_info 2021-03-18T19:17:32,242 creating /tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info 2021-03-18T19:17:32,247 writing entry points to /tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/entry_points.txt 2021-03-18T19:17:32,252 writing /tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/PKG-INFO 2021-03-18T19:17:32,258 writing requirements to /tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/requires.txt 2021-03-18T19:17:32,260 writing dependency_links to /tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/dependency_links.txt 2021-03-18T19:17:32,262 writing top-level names to /tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/top_level.txt 2021-03-18T19:17:32,267 writing manifest file '/tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/SOURCES.txt' 2021-03-18T19:17:33,475 reading manifest file '/tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/SOURCES.txt' 2021-03-18T19:17:33,478 reading manifest template 'MANIFEST.in' 2021-03-18T19:17:33,486 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-03-18T19:17:33,491 warning: no previously-included files matching '*pyc' found under directory '*' 2021-03-18T19:17:34,348 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-03-18T19:17:34,351 warning: no previously-included files matching '*' found under directory 'test' 2021-03-18T19:17:34,354 warning: no previously-included files found matching 'sequana/rm2.py' 2021-03-18T19:17:34,412 writing manifest file '/tmp/pip-pip-egg-info-gfe29s8v/sequana.egg-info/SOURCES.txt' 2021-03-18T19:17:34,552 Source in /tmp/pip-wheel-2qlcnlso/sequana_f6d6996dfa6a4df699c07b7d45a08657 has version 0.10.0, which satisfies requirement sequana==0.10.0 from https://files.pythonhosted.org/packages/9c/f6/5b6a3b0b8ab58aaf058070ad05ddc2b56a47a070278c8d0751f873cd410e/sequana-0.10.0.tar.gz#sha256=611d22d8288086877f7795e1093775ac04eebfd5eb02d51aba07cfb8ee6be2b6 2021-03-18T19:17:34,554 Removed sequana==0.10.0 from https://files.pythonhosted.org/packages/9c/f6/5b6a3b0b8ab58aaf058070ad05ddc2b56a47a070278c8d0751f873cd410e/sequana-0.10.0.tar.gz#sha256=611d22d8288086877f7795e1093775ac04eebfd5eb02d51aba07cfb8ee6be2b6 from build tracker '/tmp/pip-req-tracker-3x4yy8bd' 2021-03-18T19:17:34,564 Created temporary directory: /tmp/pip-unpack-q31f7ea5 2021-03-18T19:17:34,565 Building wheels for collected packages: sequana 2021-03-18T19:17:34,573 Created temporary directory: /tmp/pip-wheel-9hjtu0ou 2021-03-18T19:17:34,575 Building wheel for sequana (setup.py): started 2021-03-18T19:17:34,575 Destination directory: /tmp/pip-wheel-9hjtu0ou 2021-03-18T19:17:34,576 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2qlcnlso/sequana_f6d6996dfa6a4df699c07b7d45a08657/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2qlcnlso/sequana_f6d6996dfa6a4df699c07b7d45a08657/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9hjtu0ou 2021-03-18T19:17:37,099 running bdist_wheel 2021-03-18T19:17:37,115 running build 2021-03-18T19:17:37,115 running build_py 2021-03-18T19:17:37,460 creating build 2021-03-18T19:17:37,461 creating build/lib 2021-03-18T19:17:37,463 creating build/lib/sequana 2021-03-18T19:17:37,466 copying sequana/vcf_filter.py -> build/lib/sequana 2021-03-18T19:17:37,472 copying sequana/iuapc.py -> build/lib/sequana 2021-03-18T19:17:37,477 copying sequana/running_median.py -> build/lib/sequana 2021-03-18T19:17:37,482 copying sequana/featurecounts.py -> build/lib/sequana 2021-03-18T19:17:37,489 copying sequana/taxonomy.py -> build/lib/sequana 2021-03-18T19:17:37,497 copying sequana/lazyimports.py -> build/lib/sequana 2021-03-18T19:17:37,504 copying sequana/kraken.py -> build/lib/sequana 2021-03-18T19:17:37,516 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2021-03-18T19:17:37,523 copying sequana/cigar.py -> build/lib/sequana 2021-03-18T19:17:37,529 copying sequana/bedtools.py -> build/lib/sequana 2021-03-18T19:17:37,543 copying sequana/canu_scanner.py -> build/lib/sequana 2021-03-18T19:17:37,550 copying sequana/snpeff.py -> build/lib/sequana 2021-03-18T19:17:37,557 copying sequana/snaketools.py -> build/lib/sequana 2021-03-18T19:17:37,569 copying sequana/kraken_builder.py -> build/lib/sequana 2021-03-18T19:17:37,576 copying sequana/databases.py -> build/lib/sequana 2021-03-18T19:17:37,582 copying sequana/tools.py -> build/lib/sequana 2021-03-18T19:17:37,590 copying sequana/vcftools.py -> build/lib/sequana 2021-03-18T19:17:37,595 copying sequana/krona.py -> build/lib/sequana 2021-03-18T19:17:37,601 copying sequana/chipseq.py -> build/lib/sequana 2021-03-18T19:17:37,611 copying sequana/trf.py -> build/lib/sequana 2021-03-18T19:17:37,617 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2021-03-18T19:17:37,624 copying sequana/kmer.py -> build/lib/sequana 2021-03-18T19:17:37,630 copying sequana/mgi.py -> build/lib/sequana 2021-03-18T19:17:37,635 copying sequana/busco.py -> build/lib/sequana 2021-03-18T19:17:37,642 copying sequana/adapters.py -> build/lib/sequana 2021-03-18T19:17:37,651 copying sequana/pacbio.py -> build/lib/sequana 2021-03-18T19:17:37,661 copying sequana/misc.py -> build/lib/sequana 2021-03-18T19:17:37,667 copying sequana/cnv.py -> build/lib/sequana 2021-03-18T19:17:37,671 copying sequana/stats.py -> build/lib/sequana 2021-03-18T19:17:37,675 copying sequana/itol.py -> build/lib/sequana 2021-03-18T19:17:37,679 copying sequana/enrichment.py -> build/lib/sequana 2021-03-18T19:17:37,691 copying sequana/gff3.py -> build/lib/sequana 2021-03-18T19:17:37,698 copying sequana/iem.py -> build/lib/sequana 2021-03-18T19:17:37,705 copying sequana/phred.py -> build/lib/sequana 2021-03-18T19:17:37,710 copying sequana/salmon.py -> build/lib/sequana 2021-03-18T19:17:37,714 copying sequana/fastqc.py -> build/lib/sequana 2021-03-18T19:17:37,720 copying sequana/sniffer.py -> build/lib/sequana 2021-03-18T19:17:37,724 copying sequana/jsontool.py -> build/lib/sequana 2021-03-18T19:17:37,729 copying sequana/cpg_islands.py -> build/lib/sequana 2021-03-18T19:17:37,734 copying sequana/fasta.py -> build/lib/sequana 2021-03-18T19:17:37,741 copying sequana/assembly.py -> build/lib/sequana 2021-03-18T19:17:37,747 copying sequana/compare.py -> build/lib/sequana 2021-03-18T19:17:37,753 copying sequana/criteria.py -> build/lib/sequana 2021-03-18T19:17:37,758 copying sequana/rnadiff.py -> build/lib/sequana 2021-03-18T19:17:37,767 copying sequana/laa.py -> build/lib/sequana 2021-03-18T19:17:37,773 copying sequana/isoseq.py -> build/lib/sequana 2021-03-18T19:17:37,782 copying sequana/pipelines_common.py -> build/lib/sequana 2021-03-18T19:17:37,790 copying sequana/gtf.py -> build/lib/sequana 2021-03-18T19:17:37,794 copying sequana/mixture.py -> build/lib/sequana 2021-03-18T19:17:37,800 copying sequana/bamtools.py -> build/lib/sequana 2021-03-18T19:17:37,810 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2021-03-18T19:17:37,817 copying sequana/mh.py -> build/lib/sequana 2021-03-18T19:17:37,824 copying sequana/datatools.py -> build/lib/sequana 2021-03-18T19:17:37,829 copying sequana/lazy.py -> build/lib/sequana 2021-03-18T19:17:37,833 copying sequana/contigs.py -> build/lib/sequana 2021-03-18T19:17:37,838 copying sequana/find_motif.py -> build/lib/sequana 2021-03-18T19:17:37,843 copying sequana/genbank.py -> build/lib/sequana 2021-03-18T19:17:37,847 copying sequana/coverage.py -> build/lib/sequana 2021-03-18T19:17:37,854 copying sequana/fastq.py -> build/lib/sequana 2021-03-18T19:17:37,864 copying sequana/bed.py -> build/lib/sequana 2021-03-18T19:17:37,870 copying sequana/protein.py -> build/lib/sequana 2021-03-18T19:17:37,874 copying sequana/kegg.py -> build/lib/sequana 2021-03-18T19:17:37,878 copying sequana/summary.py -> build/lib/sequana 2021-03-18T19:17:37,883 copying sequana/sequence.py -> build/lib/sequana 2021-03-18T19:17:37,892 copying sequana/vst.py -> build/lib/sequana 2021-03-18T19:17:37,898 copying sequana/iotools.py -> build/lib/sequana 2021-03-18T19:17:37,904 copying sequana/errors.py -> build/lib/sequana 2021-03-18T19:17:37,909 copying sequana/annotations.py -> build/lib/sequana 2021-03-18T19:17:37,913 copying sequana/demultiplex.py -> build/lib/sequana 2021-03-18T19:17:37,918 copying sequana/__init__.py -> build/lib/sequana 2021-03-18T19:17:37,923 creating build/lib/sequana/resources 2021-03-18T19:17:37,925 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2021-03-18T19:17:37,932 creating build/lib/sequana/viz 2021-03-18T19:17:37,934 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2021-03-18T19:17:37,941 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2021-03-18T19:17:37,946 copying sequana/viz/venn.py -> build/lib/sequana/viz 2021-03-18T19:17:37,951 copying sequana/viz/pca.py -> build/lib/sequana/viz 2021-03-18T19:17:37,956 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2021-03-18T19:17:37,960 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2021-03-18T19:17:37,965 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2021-03-18T19:17:37,970 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2021-03-18T19:17:37,977 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2021-03-18T19:17:37,983 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2021-03-18T19:17:37,991 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2021-03-18T19:17:37,998 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2021-03-18T19:17:38,002 copying sequana/viz/core.py -> build/lib/sequana/viz 2021-03-18T19:17:38,007 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2021-03-18T19:17:38,012 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2021-03-18T19:17:38,020 copying sequana/viz/anova.py -> build/lib/sequana/viz 2021-03-18T19:17:38,026 copying sequana/viz/mds.py -> build/lib/sequana/viz 2021-03-18T19:17:38,032 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2021-03-18T19:17:38,037 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2021-03-18T19:17:38,043 creating build/lib/sequana/scripts 2021-03-18T19:17:38,046 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,052 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,058 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,062 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,068 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,076 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,083 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,089 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,097 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,101 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,107 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,112 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,119 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,125 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2021-03-18T19:17:38,132 creating build/lib/sequana/utils 2021-03-18T19:17:38,135 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2021-03-18T19:17:38,140 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2021-03-18T19:17:38,146 copying sequana/utils/config.py -> build/lib/sequana/utils 2021-03-18T19:17:38,151 copying sequana/utils/tree.py -> build/lib/sequana/utils 2021-03-18T19:17:38,157 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2021-03-18T19:17:38,163 creating build/lib/sequana/plots 2021-03-18T19:17:38,166 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2021-03-18T19:17:38,174 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2021-03-18T19:17:38,179 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2021-03-18T19:17:38,184 creating build/lib/sequana/sphinxext 2021-03-18T19:17:38,186 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2021-03-18T19:17:38,191 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2021-03-18T19:17:38,196 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2021-03-18T19:17:38,206 creating build/lib/sequana/gui 2021-03-18T19:17:38,208 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2021-03-18T19:17:38,215 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2021-03-18T19:17:38,221 copying sequana/gui/tools.py -> build/lib/sequana/gui 2021-03-18T19:17:38,225 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2021-03-18T19:17:38,230 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2021-03-18T19:17:38,235 copying sequana/gui/about.py -> build/lib/sequana/gui 2021-03-18T19:17:38,241 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2021-03-18T19:17:38,248 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2021-03-18T19:17:38,253 copying sequana/gui/messages.py -> build/lib/sequana/gui 2021-03-18T19:17:38,258 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2021-03-18T19:17:38,264 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2021-03-18T19:17:38,268 copying sequana/gui/browser.py -> build/lib/sequana/gui 2021-03-18T19:17:38,273 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2021-03-18T19:17:38,286 copying sequana/gui/help.py -> build/lib/sequana/gui 2021-03-18T19:17:38,291 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2021-03-18T19:17:38,301 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2021-03-18T19:17:38,306 creating build/lib/sequana/multiqc 2021-03-18T19:17:38,308 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,313 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,318 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,323 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,327 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,331 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,337 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,343 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,349 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,356 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,362 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2021-03-18T19:17:38,369 creating build/lib/sequana/modules_report 2021-03-18T19:17:38,371 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,375 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,380 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,385 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,390 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,394 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,399 copying sequana/modules_report/enrichment.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,407 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,412 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,419 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,425 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,429 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,436 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,441 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,448 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,456 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,461 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,468 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,472 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2021-03-18T19:17:38,476 creating build/lib/sequana/pipelines 2021-03-18T19:17:38,478 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2021-03-18T19:17:38,486 creating build/lib/sequana/rules 2021-03-18T19:17:38,488 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2021-03-18T19:17:38,494 creating build/lib/sequana/resources/images 2021-03-18T19:17:38,496 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2021-03-18T19:17:38,502 creating build/lib/sequana/resources/templates 2021-03-18T19:17:38,504 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2021-03-18T19:17:38,508 creating build/lib/sequana/resources/canvas 2021-03-18T19:17:38,510 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2021-03-18T19:17:38,515 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2021-03-18T19:17:38,519 creating build/lib/sequana/resources/busco 2021-03-18T19:17:38,521 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2021-03-18T19:17:38,529 creating build/lib/sequana/resources/testing 2021-03-18T19:17:38,531 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2021-03-18T19:17:38,538 creating build/lib/sequana/resources/css 2021-03-18T19:17:38,544 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2021-03-18T19:17:38,549 creating build/lib/sequana/resources/data 2021-03-18T19:17:38,551 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2021-03-18T19:17:38,557 creating build/lib/sequana/resources/js 2021-03-18T19:17:38,558 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2021-03-18T19:17:38,563 creating build/lib/sequana/resources/snpeff 2021-03-18T19:17:38,565 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2021-03-18T19:17:38,572 creating build/lib/sequana/resources/testing/rnadiff 2021-03-18T19:17:38,574 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2021-03-18T19:17:38,581 creating build/lib/sequana/resources/data/adapters 2021-03-18T19:17:38,584 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:38,589 creating build/lib/sequana/rules/codecs 2021-03-18T19:17:38,590 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2021-03-18T19:17:38,596 creating build/lib/sequana/rules/idr 2021-03-18T19:17:38,597 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2021-03-18T19:17:38,602 creating build/lib/sequana/rules/deeptools 2021-03-18T19:17:38,604 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2021-03-18T19:17:38,612 creating build/lib/sequana/rules/picard-tools 2021-03-18T19:17:38,614 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2021-03-18T19:17:38,621 creating build/lib/sequana/rules/sambamba 2021-03-18T19:17:38,624 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2021-03-18T19:17:38,629 creating build/lib/sequana/rules/Adapters 2021-03-18T19:17:38,630 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2021-03-18T19:17:38,635 creating build/lib/sequana/rules/SnpEff 2021-03-18T19:17:38,637 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2021-03-18T19:17:38,642 creating build/lib/sequana/rules/Pacbio 2021-03-18T19:17:38,644 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2021-03-18T19:17:38,650 creating build/lib/sequana/rules/Utils 2021-03-18T19:17:38,652 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2021-03-18T19:17:38,659 creating build/lib/sequana/rules/Assembly 2021-03-18T19:17:38,662 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2021-03-18T19:17:38,667 creating build/lib/sequana/rules/Variant_caller 2021-03-18T19:17:38,669 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2021-03-18T19:17:39,331 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2021-03-18T19:17:39,337 creating build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,339 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,345 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,350 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,357 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,363 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,369 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,376 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2021-03-18T19:17:39,383 copying sequana/rules/README.rst -> build/lib/sequana/rules 2021-03-18T19:17:39,390 creating build/lib/sequana/rules/tophat_mapping 2021-03-18T19:17:39,392 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2021-03-18T19:17:39,400 creating build/lib/sequana/rules/digital_normalisation 2021-03-18T19:17:39,402 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2021-03-18T19:17:39,407 creating build/lib/sequana/rules/SARTools 2021-03-18T19:17:39,409 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2021-03-18T19:17:39,415 creating build/lib/sequana/rules/quast 2021-03-18T19:17:39,417 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2021-03-18T19:17:39,424 creating build/lib/sequana/rules/preSARTools 2021-03-18T19:17:39,427 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2021-03-18T19:17:39,434 creating build/lib/sequana/rules/prokka 2021-03-18T19:17:39,436 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2021-03-18T19:17:39,443 creating build/lib/sequana/rules/extract_fasta_from_bed 2021-03-18T19:17:39,445 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2021-03-18T19:17:39,450 creating build/lib/sequana/rules/fastq_sampling 2021-03-18T19:17:39,452 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2021-03-18T19:17:39,458 creating build/lib/sequana/rules/fastq_screen 2021-03-18T19:17:39,460 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2021-03-18T19:17:39,467 creating build/lib/sequana/rules/fastq_screen_report 2021-03-18T19:17:39,470 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2021-03-18T19:17:39,477 creating build/lib/sequana/rules/fastqc_dynamic 2021-03-18T19:17:39,480 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2021-03-18T19:17:39,486 creating build/lib/sequana/rules/bwa_mem_dynamic 2021-03-18T19:17:39,488 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2021-03-18T19:17:39,494 creating build/lib/sequana/rules/samtools_depth 2021-03-18T19:17:39,496 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2021-03-18T19:17:39,502 creating build/lib/sequana/rules/samtools_sort 2021-03-18T19:17:39,504 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2021-03-18T19:17:39,511 creating build/lib/sequana/rules/bwa_bam_to_fastq 2021-03-18T19:17:39,514 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2021-03-18T19:17:39,521 creating build/lib/sequana/rules/feature_counts_dynamic 2021-03-18T19:17:39,524 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2021-03-18T19:17:39,529 creating build/lib/sequana/rules/rnaseqc 2021-03-18T19:17:39,531 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2021-03-18T19:17:39,536 creating build/lib/sequana/rules/salmon_mapping 2021-03-18T19:17:39,538 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2021-03-18T19:17:39,545 creating build/lib/sequana/rules/format_contigs 2021-03-18T19:17:39,547 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2021-03-18T19:17:39,555 creating build/lib/sequana/rules/bed_to_gff 2021-03-18T19:17:39,557 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2021-03-18T19:17:39,564 creating build/lib/sequana/rules/copy_multiple_files 2021-03-18T19:17:39,566 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2021-03-18T19:17:39,572 creating build/lib/sequana/rules/pacbio_quality 2021-03-18T19:17:39,573 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2021-03-18T19:17:39,579 creating build/lib/sequana/rules/sequana_coverage 2021-03-18T19:17:39,581 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2021-03-18T19:17:39,589 creating build/lib/sequana/rules/DupRadar 2021-03-18T19:17:39,591 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2021-03-18T19:17:39,599 creating build/lib/sequana/rules/fastp 2021-03-18T19:17:39,602 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2021-03-18T19:17:39,609 creating build/lib/sequana/rules/remove_blacklist 2021-03-18T19:17:39,612 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2021-03-18T19:17:39,619 creating build/lib/sequana/rules/salmon_index 2021-03-18T19:17:39,622 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2021-03-18T19:17:39,628 creating build/lib/sequana/rules/star_mapping 2021-03-18T19:17:39,630 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2021-03-18T19:17:39,636 creating build/lib/sequana/rules/star_index 2021-03-18T19:17:39,638 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2021-03-18T19:17:39,643 creating build/lib/sequana/rules/falco_dynamic 2021-03-18T19:17:39,645 copying sequana/rules/falco_dynamic/falco_dynamic.rules -> build/lib/sequana/rules/falco_dynamic 2021-03-18T19:17:39,652 creating build/lib/sequana/rules/dag 2021-03-18T19:17:39,655 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2021-03-18T19:17:39,663 creating build/lib/sequana/rules/igvtools 2021-03-18T19:17:39,665 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2021-03-18T19:17:39,673 creating build/lib/sequana/rules/multiqc 2021-03-18T19:17:39,675 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2021-03-18T19:17:39,683 creating build/lib/sequana/rules/spp 2021-03-18T19:17:39,685 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2021-03-18T19:17:39,691 creating build/lib/sequana/rules/bam_quality_filter 2021-03-18T19:17:39,693 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2021-03-18T19:17:39,698 creating build/lib/sequana/rules/revcomp_rule 2021-03-18T19:17:39,700 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2021-03-18T19:17:39,705 creating build/lib/sequana/rules/rulegraph 2021-03-18T19:17:39,708 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2021-03-18T19:17:39,715 creating build/lib/sequana/rules/mapping_analysis 2021-03-18T19:17:39,718 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2021-03-18T19:17:39,725 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-03-18T19:17:39,728 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-03-18T19:17:39,733 creating build/lib/sequana/rules/bam_analysis 2021-03-18T19:17:39,735 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2021-03-18T19:17:39,741 creating build/lib/sequana/rules/miRNA_count_dynamic 2021-03-18T19:17:39,743 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2021-03-18T19:17:39,749 creating build/lib/sequana/rules/bwa_index 2021-03-18T19:17:39,752 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2021-03-18T19:17:39,759 creating build/lib/sequana/rules/summary_pipeline 2021-03-18T19:17:39,761 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2021-03-18T19:17:39,769 creating build/lib/sequana/rules/conda 2021-03-18T19:17:39,771 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2021-03-18T19:17:39,779 creating build/lib/sequana/rules/feature_counts 2021-03-18T19:17:39,781 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2021-03-18T19:17:39,788 creating build/lib/sequana/rules/bowtie1_index_dynamic 2021-03-18T19:17:39,790 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2021-03-18T19:17:39,796 creating build/lib/sequana/rules/fastq_stats_dynamic 2021-03-18T19:17:39,798 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2021-03-18T19:17:39,803 creating build/lib/sequana/rules/chipuanar 2021-03-18T19:17:39,805 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2021-03-18T19:17:39,813 creating build/lib/sequana/rules/bowtie2_index_dynamic 2021-03-18T19:17:39,816 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2021-03-18T19:17:39,823 creating build/lib/sequana/rules/macs3_dynamic 2021-03-18T19:17:39,825 copying sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/lib/sequana/rules/macs3_dynamic 2021-03-18T19:17:39,833 creating build/lib/sequana/rules/multiqc2 2021-03-18T19:17:39,836 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2021-03-18T19:17:39,843 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-03-18T19:17:39,845 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-03-18T19:17:39,852 creating build/lib/sequana/rules/spikes_counting 2021-03-18T19:17:39,854 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2021-03-18T19:17:39,859 creating build/lib/sequana/rules/indel_realigner 2021-03-18T19:17:39,861 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2021-03-18T19:17:39,867 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2021-03-18T19:17:39,868 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2021-03-18T19:17:39,875 creating build/lib/sequana/rules/codecs/gz_to_fastq 2021-03-18T19:17:39,878 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2021-03-18T19:17:39,885 creating build/lib/sequana/rules/codecs/fastq_to_gz 2021-03-18T19:17:39,887 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2021-03-18T19:17:39,894 creating build/lib/sequana/rules/codecs/bam_to_fasta 2021-03-18T19:17:39,895 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2021-03-18T19:17:39,901 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-03-18T19:17:39,902 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-03-18T19:17:39,908 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-03-18T19:17:39,910 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-03-18T19:17:39,916 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2021-03-18T19:17:39,919 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2021-03-18T19:17:39,926 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-03-18T19:17:39,928 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-03-18T19:17:39,935 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2021-03-18T19:17:39,937 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2021-03-18T19:17:39,942 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2021-03-18T19:17:39,944 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2021-03-18T19:17:39,949 creating build/lib/sequana/rules/codecs/bz2_to_gz 2021-03-18T19:17:39,951 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2021-03-18T19:17:39,957 creating build/lib/sequana/rules/codecs/gz_to_bz2 2021-03-18T19:17:39,959 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2021-03-18T19:17:39,966 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-03-18T19:17:39,969 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-03-18T19:17:39,975 creating build/lib/sequana/rules/idr/preIDR_dynamic 2021-03-18T19:17:39,977 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2021-03-18T19:17:39,983 creating build/lib/sequana/rules/idr/compute_idr 2021-03-18T19:17:39,985 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2021-03-18T19:17:39,991 creating build/lib/sequana/rules/idr/union_peaks 2021-03-18T19:17:39,992 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2021-03-18T19:17:39,999 creating build/lib/sequana/rules/idr/intersectionApproach 2021-03-18T19:17:40,001 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2021-03-18T19:17:40,008 creating build/lib/sequana/rules/idr/metrics_peaks 2021-03-18T19:17:40,011 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2021-03-18T19:17:40,017 creating build/lib/sequana/rules/idr/select_peaks 2021-03-18T19:17:40,019 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2021-03-18T19:17:40,024 creating build/lib/sequana/rules/idr/stats_peakCalling 2021-03-18T19:17:40,026 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2021-03-18T19:17:40,031 creating build/lib/sequana/rules/deeptools/plotCoverage 2021-03-18T19:17:40,033 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2021-03-18T19:17:40,039 creating build/lib/sequana/rules/deeptools/multiBamSummary 2021-03-18T19:17:40,042 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2021-03-18T19:17:40,049 creating build/lib/sequana/rules/deeptools/bamCoverage 2021-03-18T19:17:40,051 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2021-03-18T19:17:40,058 creating build/lib/sequana/rules/deeptools/plotCorrelation 2021-03-18T19:17:40,060 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2021-03-18T19:17:40,065 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-03-18T19:17:40,067 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-03-18T19:17:40,072 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-03-18T19:17:40,074 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-03-18T19:17:40,080 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-03-18T19:17:40,082 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-03-18T19:17:40,089 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-03-18T19:17:40,092 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-03-18T19:17:40,099 creating build/lib/sequana/rules/picard-tools/add_read_group 2021-03-18T19:17:40,101 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2021-03-18T19:17:40,106 creating build/lib/sequana/rules/picard-tools/reorderSam 2021-03-18T19:17:40,107 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2021-03-18T19:17:40,113 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2021-03-18T19:17:40,114 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2021-03-18T19:17:40,120 creating build/lib/sequana/rules/sambamba/sambamba_filter 2021-03-18T19:17:40,123 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2021-03-18T19:17:40,130 creating build/lib/sequana/rules/Adapters/adapter_removal 2021-03-18T19:17:40,133 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2021-03-18T19:17:40,140 creating build/lib/sequana/rules/Adapters/cutadapt 2021-03-18T19:17:40,142 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2021-03-18T19:17:40,148 creating build/lib/sequana/rules/Adapters/identify_adapters 2021-03-18T19:17:40,150 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2021-03-18T19:17:40,156 creating build/lib/sequana/rules/Adapters/alien_trimmer 2021-03-18T19:17:40,158 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2021-03-18T19:17:40,165 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-03-18T19:17:40,167 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-03-18T19:17:40,174 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-03-18T19:17:40,177 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-03-18T19:17:40,183 creating build/lib/sequana/rules/peak_calling 2021-03-18T19:17:40,184 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-03-18T19:17:40,187 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-03-18T19:17:40,193 creating build/lib/sequana/rules/kraken 2021-03-18T19:17:40,193 creating build/lib/sequana/rules/kraken/1.1 2021-03-18T19:17:40,196 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2021-03-18T19:17:40,203 creating build/lib/sequana/rules/kraken/1.0 2021-03-18T19:17:40,206 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2021-03-18T19:17:40,213 creating build/lib/sequana/rules/Utils/dynamic_copy 2021-03-18T19:17:40,216 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2021-03-18T19:17:40,223 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-03-18T19:17:40,226 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-03-18T19:17:40,233 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2021-03-18T19:17:40,236 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2021-03-18T19:17:40,243 creating build/lib/sequana/rules/multiqc/2.0 2021-03-18T19:17:40,245 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2021-03-18T19:17:40,250 creating build/lib/sequana/rules/Assembly/busco 2021-03-18T19:17:40,252 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2021-03-18T19:17:40,257 creating build/lib/sequana/rules/Assembly/canu 2021-03-18T19:17:40,259 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2021-03-18T19:17:40,266 creating build/lib/sequana/rules/Assembly/busco_analysis 2021-03-18T19:17:40,269 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2021-03-18T19:17:40,276 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2021-03-18T19:17:40,279 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2021-03-18T19:17:40,286 creating build/lib/sequana/rules/Assembly/spades 2021-03-18T19:17:40,288 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2021-03-18T19:17:40,296 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-03-18T19:17:40,299 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-03-18T19:17:40,305 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-03-18T19:17:40,307 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-03-18T19:17:40,313 creating build/lib/sequana/rules/Variant_caller/freebayes 2021-03-18T19:17:40,315 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2021-03-18T19:17:40,320 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-03-18T19:17:40,322 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-03-18T19:17:40,329 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-03-18T19:17:40,332 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-03-18T19:17:40,339 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-03-18T19:17:40,341 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-03-18T19:17:40,345 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-03-18T19:17:40,352 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-03-18T19:17:40,355 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-03-18T19:17:40,363 creating build/lib/sequana/rules/SnpEff/snpeff 2021-03-18T19:17:40,364 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-03-18T19:17:40,368 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-03-18T19:17:40,376 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-03-18T19:17:40,379 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-03-18T19:17:40,387 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2021-03-18T19:17:40,395 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2021-03-18T19:17:40,407 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2021-03-18T19:17:40,416 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2021-03-18T19:17:40,424 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2021-03-18T19:17:40,431 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2021-03-18T19:17:40,438 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2021-03-18T19:17:40,446 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2021-03-18T19:17:40,455 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,462 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,470 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,479 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,486 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,493 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,500 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,508 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,515 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,522 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,531 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,575 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,600 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,610 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,617 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,637 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,642 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,650 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,657 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,664 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,670 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,676 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,683 copying sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,688 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,697 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,704 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,722 copying sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,727 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,737 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,745 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,753 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,767 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,774 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,796 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,803 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,816 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,822 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,827 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,834 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,854 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,861 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,903 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,911 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,917 copying sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,924 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,937 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2021-03-18T19:17:40,943 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,016 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,032 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,041 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,082 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,092 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,099 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,107 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,115 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,123 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,130 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,142 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,150 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,158 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,165 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,172 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,180 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,195 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,202 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,211 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,218 copying sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,225 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,232 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,240 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,283 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,290 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,297 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,312 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,321 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,328 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,335 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,347 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,356 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,371 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,379 copying sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,386 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,396 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,403 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,411 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,419 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,427 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,436 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,451 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,467 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,474 copying sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,481 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,487 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,498 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,505 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,512 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,519 copying sequana/resources/testing/test.bam.bai -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,527 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,532 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,541 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,549 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,557 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,564 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2021-03-18T19:17:41,599 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2021-03-18T19:17:41,608 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2021-03-18T19:17:41,614 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2021-03-18T19:17:41,620 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2021-03-18T19:17:41,639 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2021-03-18T19:17:41,647 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2021-03-18T19:17:41,654 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2021-03-18T19:17:41,663 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2021-03-18T19:17:41,676 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2021-03-18T19:17:41,683 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2021-03-18T19:17:41,690 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-03-18T19:17:42,147 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2021-03-18T19:17:42,236 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2021-03-18T19:17:42,247 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2021-03-18T19:17:42,303 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2021-03-18T19:17:42,310 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-03-18T19:17:42,763 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2021-03-18T19:17:42,770 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2021-03-18T19:17:42,779 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2021-03-18T19:17:47,834 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2021-03-18T19:17:47,841 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2021-03-18T19:17:47,850 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2021-03-18T19:17:47,895 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2021-03-18T19:17:47,903 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2021-03-18T19:17:47,959 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2021-03-18T19:17:47,968 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2021-03-18T19:17:47,977 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2021-03-18T19:17:47,996 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2021-03-18T19:17:48,040 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2021-03-18T19:17:48,075 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2021-03-18T19:17:48,080 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-03-18T19:17:48,100 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2021-03-18T19:17:48,111 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2021-03-18T19:17:48,119 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2021-03-18T19:17:48,129 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2021-03-18T19:17:48,137 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2021-03-18T19:17:48,150 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2021-03-18T19:17:48,161 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-03-18T19:17:48,178 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2021-03-18T19:17:48,184 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-03-18T19:17:48,202 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2021-03-18T19:17:48,213 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,230 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,262 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,269 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,277 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,295 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,327 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,338 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,346 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,359 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,368 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,376 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,389 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2021-03-18T19:17:48,405 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2021-03-18T19:17:48,415 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-03-18T19:17:48,416 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-03-18T19:17:48,420 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-03-18T19:17:48,521 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,530 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,537 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,546 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,554 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,560 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,566 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,574 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,582 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,589 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,597 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,612 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,620 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,628 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,635 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,642 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,647 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,653 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,659 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,667 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,675 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,683 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,689 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,695 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,700 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,709 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,717 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,725 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,733 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,742 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,750 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-03-18T19:17:48,826 installing to build/bdist.linux-armv7l/wheel 2021-03-18T19:17:48,826 running install 2021-03-18T19:17:48,828 running install_lib 2021-03-18T19:17:48,836 creating build/bdist.linux-armv7l 2021-03-18T19:17:48,837 creating build/bdist.linux-armv7l/wheel 2021-03-18T19:17:48,844 creating build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:48,846 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:48,853 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:48,858 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:48,863 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:48,872 creating build/bdist.linux-armv7l/wheel/sequana/resources 2021-03-18T19:17:48,876 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-03-18T19:17:48,879 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-03-18T19:17:48,887 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-03-18T19:17:48,895 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-03-18T19:17:48,900 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-03-18T19:17:48,905 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-03-18T19:17:48,907 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-03-18T19:17:48,913 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-03-18T19:17:48,919 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-03-18T19:17:48,925 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-03-18T19:17:48,930 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-03-18T19:17:48,935 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-03-18T19:17:48,937 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-03-18T19:17:48,942 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-03-18T19:17:48,946 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-03-18T19:17:48,949 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-03-18T19:17:48,955 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-03-18T19:17:48,968 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:48,970 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:48,977 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:48,985 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,027 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,050 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,058 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,064 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,070 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,089 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,095 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,101 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,105 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,109 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,114 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,120 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,126 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,132 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,138 copying build/lib/sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,143 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,149 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,153 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,168 copying build/lib/sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,172 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,180 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,187 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,194 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,204 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,208 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,227 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,231 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,243 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,250 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,256 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,261 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,277 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,282 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,322 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,330 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,336 copying build/lib/sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,341 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,349 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,354 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,421 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,434 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,441 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,480 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,490 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,497 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,504 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,509 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,515 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,520 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,530 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,537 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,543 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,548 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,553 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,559 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,574 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,581 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,589 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,596 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,603 copying build/lib/sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,608 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,613 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,618 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,624 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,665 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,670 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,676 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,689 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,694 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,698 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,703 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,713 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,720 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,732 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,738 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,742 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,750 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,756 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,763 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,768 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,774 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,779 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,791 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,803 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,808 copying build/lib/sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,816 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-03-18T19:17:49,820 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-03-18T19:17:49,825 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-03-18T19:17:49,828 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-03-18T19:17:49,923 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-03-18T19:17:49,928 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,931 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,939 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,945 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,951 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,957 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,963 copying build/lib/sequana/resources/testing/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,968 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,972 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,981 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,988 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:49,995 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:50,001 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:50,007 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:50,012 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:50,041 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-03-18T19:17:50,046 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-03-18T19:17:50,049 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-03-18T19:17:50,057 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-03-18T19:17:50,063 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-03-18T19:17:50,069 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-03-18T19:17:50,086 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-03-18T19:17:50,092 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-03-18T19:17:50,100 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:50,103 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:50,110 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:50,565 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:50,652 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:50,662 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:50,717 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:50,722 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,166 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,171 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,179 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,208 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,212 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,219 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,258 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,263 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,316 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,319 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,325 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,332 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,340 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,346 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,352 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,357 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,362 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,366 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,371 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,378 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,385 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,391 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,396 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,401 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,406 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,410 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,417 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,423 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,430 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,437 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,444 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,451 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,457 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,464 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,471 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,476 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,481 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,486 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,491 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,497 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,502 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-03-18T19:17:51,509 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,517 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,525 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,542 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,581 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,586 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,622 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,627 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,642 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,651 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,658 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,666 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,673 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,685 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,695 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,709 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,726 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,732 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,749 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,755 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,759 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,763 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-03-18T19:17:51,771 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,774 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,789 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,818 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,823 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,828 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,843 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,873 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,883 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,888 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,898 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,906 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,914 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,928 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,941 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-03-18T19:17:51,946 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-03-18T19:17:51,949 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-03-18T19:17:51,957 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-03-18T19:17:51,963 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2021-03-18T19:17:51,969 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:51,978 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:51,984 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:51,997 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,004 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,010 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,024 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,033 creating build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,036 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,045 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,051 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,057 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,063 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,069 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,075 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,082 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,088 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,094 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,101 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,109 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,115 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,121 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,127 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,134 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,140 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,146 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,152 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-03-18T19:17:52,158 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,165 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,178 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,187 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,196 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,199 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,206 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,213 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,218 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,225 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,233 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,240 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,246 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,254 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,260 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,267 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,272 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,279 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,286 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-03-18T19:17:52,290 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,297 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,301 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,306 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,313 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,320 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,327 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,332 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,338 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,345 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,354 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,366 creating build/bdist.linux-armv7l/wheel/sequana/utils 2021-03-18T19:17:52,368 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-03-18T19:17:52,375 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-03-18T19:17:52,382 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-03-18T19:17:52,388 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-03-18T19:17:52,394 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-03-18T19:17:52,399 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,406 creating build/bdist.linux-armv7l/wheel/sequana/plots 2021-03-18T19:17:52,408 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-03-18T19:17:52,416 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-03-18T19:17:52,422 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-03-18T19:17:52,427 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,432 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,438 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,445 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-03-18T19:17:52,448 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-03-18T19:17:52,454 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-03-18T19:17:52,460 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-03-18T19:17:52,465 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,477 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,485 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,494 creating build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,496 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,503 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,511 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,518 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,524 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,530 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,535 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,542 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,548 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,556 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,564 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,569 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,575 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,587 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,593 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,605 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-03-18T19:17:52,611 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,619 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,625 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,631 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,637 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,642 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,649 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,658 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,665 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,673 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,679 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,690 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,698 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,708 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,721 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,725 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,734 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,742 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,749 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,755 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,760 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,767 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,775 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,784 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,790 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,796 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,803 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-03-18T19:17:52,809 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,817 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,826 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,837 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,843 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,850 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,858 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,865 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,872 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,879 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,885 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,892 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,904 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,911 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,916 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:52,923 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,926 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,933 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,940 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,948 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,955 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,960 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,966 copying build/lib/sequana/modules_report/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,974 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,981 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,990 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:52,997 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,002 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,010 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,017 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,026 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,034 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,040 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,047 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,053 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-03-18T19:17:53,061 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-03-18T19:17:53,067 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,071 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,077 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,082 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,089 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,094 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,100 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,108 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-03-18T19:17:53,115 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-03-18T19:17:53,119 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:53,125 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:53,138 creating build/bdist.linux-armv7l/wheel/sequana/rules 2021-03-18T19:17:53,145 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-03-18T19:17:53,151 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-03-18T19:17:53,156 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-03-18T19:17:53,163 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-03-18T19:17:53,166 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-03-18T19:17:53,173 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-03-18T19:17:53,176 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-03-18T19:17:53,183 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-03-18T19:17:53,186 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-03-18T19:17:53,192 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-03-18T19:17:53,195 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-03-18T19:17:53,203 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-03-18T19:17:53,208 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-03-18T19:17:53,217 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-03-18T19:17:53,221 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-03-18T19:17:53,228 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-03-18T19:17:53,230 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-03-18T19:17:53,237 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-03-18T19:17:53,240 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-03-18T19:17:53,246 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-03-18T19:17:53,249 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-03-18T19:17:53,256 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-03-18T19:17:53,259 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-03-18T19:17:53,269 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-03-18T19:17:53,273 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-03-18T19:17:53,282 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-03-18T19:17:53,284 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-03-18T19:17:53,290 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-03-18T19:17:53,296 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-03-18T19:17:53,298 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-03-18T19:17:53,305 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-03-18T19:17:53,308 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-03-18T19:17:53,316 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-03-18T19:17:53,319 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-03-18T19:17:53,328 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-03-18T19:17:53,334 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-03-18T19:17:53,338 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-03-18T19:17:53,347 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-03-18T19:17:53,350 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-03-18T19:17:53,357 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-03-18T19:17:53,360 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-03-18T19:17:53,368 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-03-18T19:17:53,372 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-03-18T19:17:53,382 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-03-18T19:17:53,385 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-03-18T19:17:53,393 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-03-18T19:17:53,395 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-03-18T19:17:53,402 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-03-18T19:17:53,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-03-18T19:17:53,409 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-03-18T19:17:53,416 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-03-18T19:17:53,419 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-03-18T19:17:53,421 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-03-18T19:17:53,429 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-03-18T19:17:53,432 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-03-18T19:17:53,440 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2021-03-18T19:17:53,443 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2021-03-18T19:17:53,450 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-03-18T19:17:53,452 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-03-18T19:17:53,458 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-03-18T19:17:53,459 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-03-18T19:17:53,464 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-03-18T19:17:53,470 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-03-18T19:17:53,473 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-03-18T19:17:53,481 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-03-18T19:17:53,484 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-03-18T19:17:53,491 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-03-18T19:17:53,492 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-03-18T19:17:53,499 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-03-18T19:17:53,501 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-03-18T19:17:53,507 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-03-18T19:17:53,510 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-03-18T19:17:53,518 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-03-18T19:17:53,520 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-03-18T19:17:53,528 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-03-18T19:17:53,530 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-03-18T19:17:53,537 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-03-18T19:17:53,538 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-03-18T19:17:53,545 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-03-18T19:17:53,547 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-03-18T19:17:53,556 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-03-18T19:17:53,560 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-03-18T19:17:53,564 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-03-18T19:17:53,571 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-03-18T19:17:53,573 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-03-18T19:17:53,579 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-03-18T19:17:53,581 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-03-18T19:17:53,586 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-03-18T19:17:53,588 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-03-18T19:17:53,596 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-03-18T19:17:53,599 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-03-18T19:17:53,605 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-03-18T19:17:53,611 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-03-18T19:17:53,614 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-03-18T19:17:53,621 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-03-18T19:17:53,625 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-03-18T19:17:53,628 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-03-18T19:17:53,635 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-03-18T19:17:53,636 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-03-18T19:17:53,641 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-03-18T19:17:53,646 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-03-18T19:17:53,649 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-03-18T19:17:53,652 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-03-18T19:17:53,660 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-03-18T19:17:53,663 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-03-18T19:17:53,672 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-03-18T19:17:53,674 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-03-18T19:17:53,681 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-03-18T19:17:53,687 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-03-18T19:17:53,690 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-03-18T19:17:53,698 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-03-18T19:17:53,700 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-03-18T19:17:53,708 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-03-18T19:17:53,711 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-03-18T19:17:53,719 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-03-18T19:17:53,721 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-03-18T19:17:53,729 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-03-18T19:17:53,732 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-03-18T19:17:53,740 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-03-18T19:17:53,742 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-03-18T19:17:53,750 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-03-18T19:17:53,754 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-03-18T19:17:53,759 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-03-18T19:17:53,762 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-03-18T19:17:53,770 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-03-18T19:17:53,773 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-03-18T19:17:53,781 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-03-18T19:17:53,783 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-03-18T19:17:53,791 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-03-18T19:17:53,794 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-03-18T19:17:53,802 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2021-03-18T19:17:53,806 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-03-18T19:17:53,809 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-03-18T19:17:53,817 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-03-18T19:17:53,819 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-03-18T19:17:53,826 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-03-18T19:17:53,832 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-03-18T19:17:53,834 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-03-18T19:17:53,840 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-03-18T19:17:53,842 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-03-18T19:17:53,848 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-03-18T19:17:53,849 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-03-18T19:17:53,856 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-03-18T19:17:53,859 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-03-18T19:17:53,867 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2021-03-18T19:17:53,871 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-03-18T19:17:53,874 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-03-18T19:17:53,880 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2021-03-18T19:17:53,883 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-03-18T19:17:53,886 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-03-18T19:17:53,893 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-03-18T19:17:53,895 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-03-18T19:17:53,902 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-03-18T19:17:53,905 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-03-18T19:17:53,913 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-03-18T19:17:53,916 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-03-18T19:17:53,924 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-03-18T19:17:53,927 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-03-18T19:17:53,935 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-03-18T19:17:53,937 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-03-18T19:17:53,945 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-03-18T19:17:53,949 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-03-18T19:17:53,952 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-03-18T19:17:53,960 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-03-18T19:17:53,962 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-03-18T19:17:53,970 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-03-18T19:17:53,973 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-03-18T19:17:53,979 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-03-18T19:17:53,985 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-03-18T19:17:53,988 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-03-18T19:17:53,996 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-03-18T19:17:53,999 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-03-18T19:17:54,007 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-03-18T19:17:54,009 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-03-18T19:17:54,017 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-03-18T19:17:54,020 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-03-18T19:17:54,028 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2021-03-18T19:17:54,031 copying build/lib/sequana/rules/falco_dynamic/falco_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2021-03-18T19:17:54,039 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-03-18T19:17:54,041 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-03-18T19:17:54,049 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-03-18T19:17:54,052 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-03-18T19:17:54,060 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-03-18T19:17:54,062 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-03-18T19:17:54,070 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-03-18T19:17:54,073 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-03-18T19:17:54,082 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-03-18T19:17:54,084 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-03-18T19:17:54,092 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-03-18T19:17:54,095 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-03-18T19:17:54,103 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-03-18T19:17:54,106 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-03-18T19:17:54,113 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-03-18T19:17:54,116 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-03-18T19:17:54,125 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-03-18T19:17:54,127 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-03-18T19:17:54,135 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-03-18T19:17:54,138 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-03-18T19:17:54,146 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-03-18T19:17:54,148 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-03-18T19:17:54,156 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-03-18T19:17:54,159 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-03-18T19:17:54,167 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-03-18T19:17:54,169 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-03-18T19:17:54,177 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-03-18T19:17:54,180 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-03-18T19:17:54,188 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-03-18T19:17:54,192 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-03-18T19:17:54,195 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-03-18T19:17:54,203 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-03-18T19:17:54,205 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-03-18T19:17:54,215 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-03-18T19:17:54,217 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-03-18T19:17:54,225 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-03-18T19:17:54,228 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-03-18T19:17:54,236 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-03-18T19:17:54,239 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-03-18T19:17:54,245 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-03-18T19:17:54,251 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-03-18T19:17:54,254 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-03-18T19:17:54,262 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-03-18T19:17:54,264 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-03-18T19:17:54,272 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-03-18T19:17:54,275 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-03-18T19:17:54,283 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-03-18T19:17:54,286 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-03-18T19:17:54,294 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-03-18T19:17:54,297 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-03-18T19:17:54,305 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-03-18T19:17:54,308 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-03-18T19:17:54,317 creating build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-03-18T19:17:54,320 copying build/lib/sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-03-18T19:17:54,328 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-03-18T19:17:54,331 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-03-18T19:17:54,339 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-03-18T19:17:54,341 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-03-18T19:17:54,361 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-03-18T19:17:54,364 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-03-18T19:17:54,370 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-03-18T19:17:54,377 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-03-18T19:17:54,380 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-03-18T19:17:54,388 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-03-18T19:17:54,392 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-03-18T19:17:54,395 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-03-18T19:17:54,403 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-03-18T19:17:54,406 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-03-18T19:17:54,415 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-03-18T19:17:54,417 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-03-18T19:17:54,425 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-03-18T19:17:54,428 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-03-18T19:17:54,436 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-03-18T19:17:54,438 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-03-18T19:17:54,445 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-03-18T19:17:54,449 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-03-18T19:17:54,454 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:54,460 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:54,466 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:54,472 copying build/lib/sequana/annotations.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:54,477 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:54,484 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2021-03-18T19:17:54,489 running install_egg_info 2021-03-18T19:17:54,545 running egg_info 2021-03-18T19:17:54,547 writing requirements to sequana.egg-info/requires.txt 2021-03-18T19:17:54,550 writing sequana.egg-info/PKG-INFO 2021-03-18T19:17:54,555 writing top-level names to sequana.egg-info/top_level.txt 2021-03-18T19:17:54,559 writing entry points to sequana.egg-info/entry_points.txt 2021-03-18T19:17:54,561 writing dependency_links to sequana.egg-info/dependency_links.txt 2021-03-18T19:17:54,857 reading manifest file 'sequana.egg-info/SOURCES.txt' 2021-03-18T19:17:54,894 reading manifest template 'MANIFEST.in' 2021-03-18T19:17:54,905 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-03-18T19:17:54,913 warning: no previously-included files matching '*pyc' found under directory '*' 2021-03-18T19:17:57,636 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-03-18T19:17:57,642 warning: no previously-included files matching '*' found under directory 'test' 2021-03-18T19:17:57,648 warning: no previously-included files found matching 'sequana/rm2.py' 2021-03-18T19:17:57,738 writing manifest file 'sequana.egg-info/SOURCES.txt' 2021-03-18T19:17:57,745 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.10.0-py3.5.egg-info 2021-03-18T19:17:57,787 running install_scripts 2021-03-18T19:17:58,133 creating build/bdist.linux-armv7l/wheel/sequana-0.10.0.dist-info/WHEEL 2021-03-18T19:18:07,144 Building wheel for sequana (setup.py): finished with status 'done' 2021-03-18T19:18:07,392 Created wheel for sequana: filename=sequana-0.10.0-py3-none-any.whl size=14465520 sha256=76bb00734b26314836e4c283c3406e597c96626ba9b367ba50e4f0aadf66c2d6 2021-03-18T19:18:07,393 Stored in directory: /tmp/pip-ephem-wheel-cache-zrm00pcm/wheels/d5/c4/8e/58fcb3503fb527a884eabd4c046c8a681be5d4090a86e142bb 2021-03-18T19:18:07,468 Successfully built sequana 2021-03-18T19:18:09,974 Removed build tracker: '/tmp/pip-req-tracker-3x4yy8bd'