2021-03-18T23:01:19,122 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-18T23:01:19,954 Created temporary directory: /tmp/pip-ephem-wheel-cache-ts06xmqy
2021-03-18T23:01:19,959 Created temporary directory: /tmp/pip-req-tracker-xyz4ydy1
2021-03-18T23:01:19,960 Initialized build tracking at /tmp/pip-req-tracker-xyz4ydy1
2021-03-18T23:01:19,960 Created build tracker: /tmp/pip-req-tracker-xyz4ydy1
2021-03-18T23:01:19,960 Entered build tracker: /tmp/pip-req-tracker-xyz4ydy1
2021-03-18T23:01:19,962 Created temporary directory: /tmp/pip-wheel-kng7hfz8
2021-03-18T23:01:20,027 1 location(s) to search for versions of ebi-eva-common-pyutils:
2021-03-18T23:01:20,027 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-18T23:01:20,028 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-18T23:01:20,030 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-18T23:01:20,035 Found index url https://pypi.org/simple
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2021-03-18T23:01:20,446   Found link https://files.pythonhosted.org/packages/0f/5c/283ef1a9bff4dac565284ab47e542e3b82ba08d748e054b115e08fc78aa1/ebi_eva_common_pyutils-0.1.1.tar.gz#sha256=28c5bca7afc77f935319006704a86d0b396a12cfc511e7cffbbf505d847fa4e6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.1
2021-03-18T23:01:20,447   Found link https://files.pythonhosted.org/packages/02/cb/3049d6162e9542dd6513b8767c5dc1e394c2c3a107465ef7a2d770fc16bb/ebi_eva_common_pyutils-0.1.2.tar.gz#sha256=6c1d7c64e1133d7ac95cd6c6bcde70d4509b424a69c259aa33ed02d0c6c57bf6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.2
2021-03-18T23:01:20,448   Found link https://files.pythonhosted.org/packages/67/9b/032eaa416c06a9b8fd815671927891b1e32a245fa4c3d88aea49a3af972e/ebi_eva_common_pyutils-0.1.4.tar.gz#sha256=478d3b8ddba339cb74919eb0f2293d54732999b32a0493ce8d1d5a0c71ba6fc1 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.4
2021-03-18T23:01:20,449   Found link https://files.pythonhosted.org/packages/56/b2/b01ae2bd76c7e6abcb250f3e58d706993f728de86324296c5cdfca7115f3/ebi_eva_common_pyutils-0.1.5.tar.gz#sha256=68b44d4a65b4efa3981929458a9959de6b8b0292595f8f4c272df42226752c64 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.5
2021-03-18T23:01:20,450   Found link https://files.pythonhosted.org/packages/b9/78/f55123ffc2edc788f9fc14921cee21d2319023fe58b6cd1e8b66b5455a87/ebi_eva_common_pyutils-0.1.6.tar.gz#sha256=a4472897a78ed5d10a14e16ad6d1a87226f0ab83a7decb105db6b1e6ecbf6203 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.6
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2021-03-18T23:01:20,469   Found link https://files.pythonhosted.org/packages/fc/98/f737cd837f64d9a7539d92e91d83f5380005e9c310652cefd3a38e26dd60/ebi_eva_common_pyutils-0.3.8.tar.gz#sha256=b3c120aed17ce4af9bb3e2c4607148f89f4abb8fd0e874e7dcb595c1c91497ee (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.8
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2021-03-18T23:01:20,471   Found link https://files.pythonhosted.org/packages/a5/39/7aed0dc62fa150abb1e8a9c9e96fca8ae5434d637015ef8c1f8e57da19cd/ebi_eva_common_pyutils-0.3.9.dev2.tar.gz#sha256=2f48c89d85577310cdc32b67d1527c013b27f73da07170d9e5063e699c99c016 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev2
2021-03-18T23:01:20,472   Found link https://files.pythonhosted.org/packages/46/6e/a3a185fa7b1aaf92468e6883dbc0ca91afc1327eab2fdef1148b28189c3b/ebi_eva_common_pyutils-0.3.9.dev3.tar.gz#sha256=bd82fd9cf205bdcf5ac2304054c931da5fa0dc9e619bc34ba5732f95f04a7d06 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev3
2021-03-18T23:01:20,515 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-03-18T23:01:20,551 Collecting ebi-eva-common-pyutils==0.3.9.dev3
2021-03-18T23:01:20,555   Created temporary directory: /tmp/pip-unpack-dnzer527
2021-03-18T23:01:20,786   Downloading ebi_eva_common_pyutils-0.3.9.dev3.tar.gz (17 kB)
2021-03-18T23:01:21,004   Added ebi-eva-common-pyutils==0.3.9.dev3 from https://files.pythonhosted.org/packages/46/6e/a3a185fa7b1aaf92468e6883dbc0ca91afc1327eab2fdef1148b28189c3b/ebi_eva_common_pyutils-0.3.9.dev3.tar.gz#sha256=bd82fd9cf205bdcf5ac2304054c931da5fa0dc9e619bc34ba5732f95f04a7d06 to build tracker '/tmp/pip-req-tracker-xyz4ydy1'
2021-03-18T23:01:21,006     Running setup.py (path:/tmp/pip-wheel-kng7hfz8/ebi-eva-common-pyutils_93bff51d46d844b282a688f0db38e0a0/setup.py) egg_info for package ebi-eva-common-pyutils
2021-03-18T23:01:21,007     Created temporary directory: /tmp/pip-pip-egg-info-zxvqcdwt
2021-03-18T23:01:21,008     Running command python setup.py egg_info
2021-03-18T23:01:23,254     running egg_info
2021-03-18T23:01:23,262     creating /tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info
2021-03-18T23:01:23,265     writing top-level names to /tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-18T23:01:23,268     writing requirements to /tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-18T23:01:23,271     writing dependency_links to /tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-18T23:01:23,274     writing /tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-18T23:01:23,280     writing manifest file '/tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-18T23:01:23,642     reading manifest file '/tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-18T23:01:23,652     writing manifest file '/tmp/pip-pip-egg-info-zxvqcdwt/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-18T23:01:23,654     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev3' to '0.3.9.dev3'
2021-03-18T23:01:23,655       warnings.warn(tmpl.format(**locals()))
2021-03-18T23:01:23,788   Source in /tmp/pip-wheel-kng7hfz8/ebi-eva-common-pyutils_93bff51d46d844b282a688f0db38e0a0 has version 0.3.9.dev3, which satisfies requirement ebi-eva-common-pyutils==0.3.9.dev3 from https://files.pythonhosted.org/packages/46/6e/a3a185fa7b1aaf92468e6883dbc0ca91afc1327eab2fdef1148b28189c3b/ebi_eva_common_pyutils-0.3.9.dev3.tar.gz#sha256=bd82fd9cf205bdcf5ac2304054c931da5fa0dc9e619bc34ba5732f95f04a7d06
2021-03-18T23:01:23,790   Removed ebi-eva-common-pyutils==0.3.9.dev3 from https://files.pythonhosted.org/packages/46/6e/a3a185fa7b1aaf92468e6883dbc0ca91afc1327eab2fdef1148b28189c3b/ebi_eva_common_pyutils-0.3.9.dev3.tar.gz#sha256=bd82fd9cf205bdcf5ac2304054c931da5fa0dc9e619bc34ba5732f95f04a7d06 from build tracker '/tmp/pip-req-tracker-xyz4ydy1'
2021-03-18T23:01:23,798 Created temporary directory: /tmp/pip-unpack-oh2zxoh0
2021-03-18T23:01:23,799 Building wheels for collected packages: ebi-eva-common-pyutils
2021-03-18T23:01:23,808   Created temporary directory: /tmp/pip-wheel-565a3n_e
2021-03-18T23:01:23,809   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-03-18T23:01:23,810   Destination directory: /tmp/pip-wheel-565a3n_e
2021-03-18T23:01:23,810   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-kng7hfz8/ebi-eva-common-pyutils_93bff51d46d844b282a688f0db38e0a0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-kng7hfz8/ebi-eva-common-pyutils_93bff51d46d844b282a688f0db38e0a0/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-565a3n_e
2021-03-18T23:01:25,948   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev3' to '0.3.9.dev3'
2021-03-18T23:01:25,949     warnings.warn(tmpl.format(**locals()))
2021-03-18T23:01:26,068   running bdist_wheel
2021-03-18T23:01:26,084   running build
2021-03-18T23:01:26,085   running build_py
2021-03-18T23:01:26,423   creating build
2021-03-18T23:01:26,424   creating build/lib
2021-03-18T23:01:26,426   creating build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,429   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,434   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,439   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,445   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,451   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,457   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,462   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,466   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,470   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,474   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,478   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-18T23:01:26,485   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-18T23:01:26,488   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-18T23:01:26,494   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-18T23:01:26,500   creating build/lib/ebi_eva_common_pyutils/assembly
2021-03-18T23:01:26,503   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-18T23:01:26,509   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-18T23:01:26,514   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-03-18T23:01:26,516   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-18T23:01:26,521   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-18T23:01:26,529   creating build/lib/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,532   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,540   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,545   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,552   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-03-18T23:01:26,555   copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-18T23:01:26,561   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-18T23:01:26,579   installing to build/bdist.linux-armv7l/wheel
2021-03-18T23:01:26,580   running install
2021-03-18T23:01:26,582   running install_lib
2021-03-18T23:01:26,590   creating build/bdist.linux-armv7l
2021-03-18T23:01:26,591   creating build/bdist.linux-armv7l/wheel
2021-03-18T23:01:26,595   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,597   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,604   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-18T23:01:26,606   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-18T23:01:26,610   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-18T23:01:26,614   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,620   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-18T23:01:26,622   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-18T23:01:26,629   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-18T23:01:26,636   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-18T23:01:26,639   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-18T23:01:26,646   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-18T23:01:26,651   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,653   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,658   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,662   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-18T23:01:26,667   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,673   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,679   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,684   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,689   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,693   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,699   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-18T23:01:26,700   copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-18T23:01:26,706   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-18T23:01:26,711   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,716   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,722   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-18T23:01:26,726   running install_egg_info
2021-03-18T23:01:26,772   running egg_info
2021-03-18T23:01:26,774   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-18T23:01:26,779   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-18T23:01:26,781   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-18T23:01:26,784   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-18T23:01:26,799   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-18T23:01:26,811   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-18T23:01:26,815   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev3-py3.5.egg-info
2021-03-18T23:01:26,840   running install_scripts
2021-03-18T23:01:27,040   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev3.dist-info/WHEEL
2021-03-18T23:01:27,353   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-03-18T23:01:27,358   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev3-py3-none-any.whl size=28190 sha256=b23edd80a60752be1cbcdb1aab0574c26a92a1f963672b64ac296fc80be837d4
2021-03-18T23:01:27,359   Stored in directory: /tmp/pip-ephem-wheel-cache-ts06xmqy/wheels/55/63/59/e39d7ba87e95b01c4f17116cc898aad7da1c0710dd8e96a2f5
2021-03-18T23:01:27,378 Successfully built ebi-eva-common-pyutils
2021-03-18T23:01:27,388 Removed build tracker: '/tmp/pip-req-tracker-xyz4ydy1'