2021-03-22T11:45:31,454 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-03-22T11:45:32,174 Created temporary directory: /tmp/pip-ephem-wheel-cache-_etwbfra 2021-03-22T11:45:32,179 Created temporary directory: /tmp/pip-req-tracker-kk0fubpf 2021-03-22T11:45:32,180 Initialized build tracking at /tmp/pip-req-tracker-kk0fubpf 2021-03-22T11:45:32,180 Created build tracker: /tmp/pip-req-tracker-kk0fubpf 2021-03-22T11:45:32,181 Entered build tracker: /tmp/pip-req-tracker-kk0fubpf 2021-03-22T11:45:32,182 Created temporary directory: /tmp/pip-wheel-rb4n1xsa 2021-03-22T11:45:32,247 1 location(s) to search for versions of ebi-eva-common-pyutils: 2021-03-22T11:45:32,247 * https://pypi.org/simple/ebi-eva-common-pyutils/ 2021-03-22T11:45:32,248 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/ 2021-03-22T11:45:32,250 Getting page 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2021-03-22T11:45:33,163 Added ebi-eva-common-pyutils==0.3.9.dev5 from https://files.pythonhosted.org/packages/0a/bd/fd183b78af2426c630b73cee4882a85be8c3e1bcaa7241d90b20653e34d9/ebi_eva_common_pyutils-0.3.9.dev5.tar.gz#sha256=0e31e6b7fe204d828b6bce284c72a12f9668aa0a13c871efb8e5a041cccb40aa to build tracker '/tmp/pip-req-tracker-kk0fubpf' 2021-03-22T11:45:33,165 Running setup.py (path:/tmp/pip-wheel-rb4n1xsa/ebi-eva-common-pyutils_45693ba2642345c4bb75e4b962b70df2/setup.py) egg_info for package ebi-eva-common-pyutils 2021-03-22T11:45:33,167 Created temporary directory: /tmp/pip-pip-egg-info-l261j4ij 2021-03-22T11:45:33,168 Running command python setup.py egg_info 2021-03-22T11:45:35,480 running egg_info 2021-03-22T11:45:35,489 creating /tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info 2021-03-22T11:45:35,494 writing top-level names to /tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info/top_level.txt 2021-03-22T11:45:35,497 writing requirements to /tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info/requires.txt 2021-03-22T11:45:35,499 writing dependency_links to /tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info/dependency_links.txt 2021-03-22T11:45:35,501 writing /tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info/PKG-INFO 2021-03-22T11:45:35,508 writing manifest file '/tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info/SOURCES.txt' 2021-03-22T11:45:35,877 reading manifest file '/tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info/SOURCES.txt' 2021-03-22T11:45:35,887 writing manifest file '/tmp/pip-pip-egg-info-l261j4ij/ebi_eva_common_pyutils.egg-info/SOURCES.txt' 2021-03-22T11:45:35,889 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev5' to '0.3.9.dev5' 2021-03-22T11:45:35,890 warnings.warn(tmpl.format(**locals())) 2021-03-22T11:45:36,022 Source in /tmp/pip-wheel-rb4n1xsa/ebi-eva-common-pyutils_45693ba2642345c4bb75e4b962b70df2 has version 0.3.9.dev5, which satisfies requirement ebi-eva-common-pyutils==0.3.9.dev5 from https://files.pythonhosted.org/packages/0a/bd/fd183b78af2426c630b73cee4882a85be8c3e1bcaa7241d90b20653e34d9/ebi_eva_common_pyutils-0.3.9.dev5.tar.gz#sha256=0e31e6b7fe204d828b6bce284c72a12f9668aa0a13c871efb8e5a041cccb40aa 2021-03-22T11:45:36,024 Removed ebi-eva-common-pyutils==0.3.9.dev5 from https://files.pythonhosted.org/packages/0a/bd/fd183b78af2426c630b73cee4882a85be8c3e1bcaa7241d90b20653e34d9/ebi_eva_common_pyutils-0.3.9.dev5.tar.gz#sha256=0e31e6b7fe204d828b6bce284c72a12f9668aa0a13c871efb8e5a041cccb40aa from build tracker '/tmp/pip-req-tracker-kk0fubpf' 2021-03-22T11:45:36,032 Created temporary directory: /tmp/pip-unpack-8t07_4e_ 2021-03-22T11:45:36,034 Building wheels for collected packages: ebi-eva-common-pyutils 2021-03-22T11:45:36,042 Created temporary directory: /tmp/pip-wheel-69wp3u7j 2021-03-22T11:45:36,043 Building wheel for ebi-eva-common-pyutils (setup.py): started 2021-03-22T11:45:36,044 Destination directory: /tmp/pip-wheel-69wp3u7j 2021-03-22T11:45:36,045 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rb4n1xsa/ebi-eva-common-pyutils_45693ba2642345c4bb75e4b962b70df2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rb4n1xsa/ebi-eva-common-pyutils_45693ba2642345c4bb75e4b962b70df2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-69wp3u7j 2021-03-22T11:45:38,226 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev5' to '0.3.9.dev5' 2021-03-22T11:45:38,227 warnings.warn(tmpl.format(**locals())) 2021-03-22T11:45:38,347 running bdist_wheel 2021-03-22T11:45:38,363 running build 2021-03-22T11:45:38,364 running build_py 2021-03-22T11:45:38,703 creating build 2021-03-22T11:45:38,703 creating build/lib 2021-03-22T11:45:38,705 creating build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,709 copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,714 copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,719 copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,724 copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,728 copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,732 copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,738 copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,744 copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,750 copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,756 copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,761 copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils 2021-03-22T11:45:38,768 creating build/lib/ebi_eva_common_pyutils/nextflow 2021-03-22T11:45:38,771 copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow 2021-03-22T11:45:38,777 copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow 2021-03-22T11:45:38,785 creating build/lib/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,788 copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,795 copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,800 copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,805 creating build/lib/ebi_eva_common_pyutils/mongodb 2021-03-22T11:45:38,807 copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb 2021-03-22T11:45:38,812 copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb 2021-03-22T11:45:38,820 creating build/lib/ebi_eva_common_pyutils/taxonomy 2021-03-22T11:45:38,823 copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy 2021-03-22T11:45:38,831 copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy 2021-03-22T11:45:38,837 creating build/lib/ebi_eva_common_pyutils/assembly 2021-03-22T11:45:38,840 copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly 2021-03-22T11:45:38,848 copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly 2021-03-22T11:45:38,869 installing to build/bdist.linux-armv7l/wheel 2021-03-22T11:45:38,870 running install 2021-03-22T11:45:38,872 running install_lib 2021-03-22T11:45:38,880 creating build/bdist.linux-armv7l 2021-03-22T11:45:38,881 creating build/bdist.linux-armv7l/wheel 2021-03-22T11:45:38,885 creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:38,887 copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:38,892 copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:38,897 copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:38,904 creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow 2021-03-22T11:45:38,906 copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow 2021-03-22T11:45:38,913 copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow 2021-03-22T11:45:38,918 copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:38,926 creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,929 copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,936 copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,942 copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation 2021-03-22T11:45:38,949 creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb 2021-03-22T11:45:38,951 copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb 2021-03-22T11:45:38,958 copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb 2021-03-22T11:45:38,964 copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:38,970 copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:38,980 creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy 2021-03-22T11:45:38,984 copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy 2021-03-22T11:45:38,991 copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy 2021-03-22T11:45:38,996 copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:39,128 copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:39,134 copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:39,140 copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:39,147 creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly 2021-03-22T11:45:39,149 copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly 2021-03-22T11:45:39,157 copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly 2021-03-22T11:45:39,162 copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils 2021-03-22T11:45:39,166 running install_egg_info 2021-03-22T11:45:39,223 running egg_info 2021-03-22T11:45:39,225 writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt 2021-03-22T11:45:39,227 writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt 2021-03-22T11:45:39,230 writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt 2021-03-22T11:45:39,233 writing ebi_eva_common_pyutils.egg-info/PKG-INFO 2021-03-22T11:45:39,251 reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt' 2021-03-22T11:45:39,263 writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt' 2021-03-22T11:45:39,267 Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev5-py3.5.egg-info 2021-03-22T11:45:39,291 running install_scripts 2021-03-22T11:45:39,500 creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev5.dist-info/WHEEL 2021-03-22T11:45:39,811 Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done' 2021-03-22T11:45:39,816 Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev5-py3-none-any.whl size=28282 sha256=0157c8ae0582e233a1647e0e4c8937f0efd1bcd5c0b21669daea44bcd1ef9ad9 2021-03-22T11:45:39,817 Stored in directory: /tmp/pip-ephem-wheel-cache-_etwbfra/wheels/f1/84/12/21497b86f3f866bd916651da4bebf091f1c5637bfda8f048be 2021-03-22T11:45:39,835 Successfully built ebi-eva-common-pyutils 2021-03-22T11:45:39,846 Removed build tracker: '/tmp/pip-req-tracker-kk0fubpf'