2021-03-22T12:39:35,478 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-22T12:39:36,147 Created temporary directory: /tmp/pip-ephem-wheel-cache-e221iy4w
2021-03-22T12:39:36,152 Created temporary directory: /tmp/pip-req-tracker-v18pq2hi
2021-03-22T12:39:36,153 Initialized build tracking at /tmp/pip-req-tracker-v18pq2hi
2021-03-22T12:39:36,154 Created build tracker: /tmp/pip-req-tracker-v18pq2hi
2021-03-22T12:39:36,154 Entered build tracker: /tmp/pip-req-tracker-v18pq2hi
2021-03-22T12:39:36,155 Created temporary directory: /tmp/pip-wheel-w99l324y
2021-03-22T12:39:36,230 1 location(s) to search for versions of ebi-eva-common-pyutils:
2021-03-22T12:39:36,230 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-22T12:39:36,231 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-22T12:39:36,233 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-22T12:39:36,238 Found index url https://pypi.org/simple
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2021-03-22T12:39:36,595   Found link https://files.pythonhosted.org/packages/0f/5c/283ef1a9bff4dac565284ab47e542e3b82ba08d748e054b115e08fc78aa1/ebi_eva_common_pyutils-0.1.1.tar.gz#sha256=28c5bca7afc77f935319006704a86d0b396a12cfc511e7cffbbf505d847fa4e6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.1
2021-03-22T12:39:36,596   Found link https://files.pythonhosted.org/packages/02/cb/3049d6162e9542dd6513b8767c5dc1e394c2c3a107465ef7a2d770fc16bb/ebi_eva_common_pyutils-0.1.2.tar.gz#sha256=6c1d7c64e1133d7ac95cd6c6bcde70d4509b424a69c259aa33ed02d0c6c57bf6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.2
2021-03-22T12:39:36,597   Found link https://files.pythonhosted.org/packages/67/9b/032eaa416c06a9b8fd815671927891b1e32a245fa4c3d88aea49a3af972e/ebi_eva_common_pyutils-0.1.4.tar.gz#sha256=478d3b8ddba339cb74919eb0f2293d54732999b32a0493ce8d1d5a0c71ba6fc1 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.4
2021-03-22T12:39:36,598   Found link https://files.pythonhosted.org/packages/56/b2/b01ae2bd76c7e6abcb250f3e58d706993f728de86324296c5cdfca7115f3/ebi_eva_common_pyutils-0.1.5.tar.gz#sha256=68b44d4a65b4efa3981929458a9959de6b8b0292595f8f4c272df42226752c64 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.5
2021-03-22T12:39:36,599   Found link https://files.pythonhosted.org/packages/b9/78/f55123ffc2edc788f9fc14921cee21d2319023fe58b6cd1e8b66b5455a87/ebi_eva_common_pyutils-0.1.6.tar.gz#sha256=a4472897a78ed5d10a14e16ad6d1a87226f0ab83a7decb105db6b1e6ecbf6203 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.6
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2021-03-22T12:39:36,620   Found link https://files.pythonhosted.org/packages/46/6e/a3a185fa7b1aaf92468e6883dbc0ca91afc1327eab2fdef1148b28189c3b/ebi_eva_common_pyutils-0.3.9.dev3.tar.gz#sha256=bd82fd9cf205bdcf5ac2304054c931da5fa0dc9e619bc34ba5732f95f04a7d06 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev3
2021-03-22T12:39:36,621   Found link https://files.pythonhosted.org/packages/7d/0d/52e58bb121e3bfb3f33be48bf352e7eef3db35c0da8277de36ccf5a6e95a/ebi_eva_common_pyutils-0.3.9.dev4.tar.gz#sha256=9e038fb6c9fa91bef16371ed4ffd8441b1439727a881e3eac9f09740f4f562c9 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev4
2021-03-22T12:39:36,622   Found link https://files.pythonhosted.org/packages/0a/bd/fd183b78af2426c630b73cee4882a85be8c3e1bcaa7241d90b20653e34d9/ebi_eva_common_pyutils-0.3.9.dev5.tar.gz#sha256=0e31e6b7fe204d828b6bce284c72a12f9668aa0a13c871efb8e5a041cccb40aa (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev5
2021-03-22T12:39:36,623   Found link https://files.pythonhosted.org/packages/38/2b/a5f1ed445e800df42feea0f26f50f72ea8fed8bb4d6185c079ad32eb1353/ebi_eva_common_pyutils-0.3.9.dev6.tar.gz#sha256=97440b6f64fc0c9f5ccdb53a1d353359108698aa9d4ed96fde561feaa4b9feb1 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev6
2021-03-22T12:39:36,668 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-03-22T12:39:36,703 Collecting ebi-eva-common-pyutils==0.3.9.dev6
2021-03-22T12:39:36,707   Created temporary directory: /tmp/pip-unpack-hk4kdei1
2021-03-22T12:39:36,933   Downloading ebi_eva_common_pyutils-0.3.9.dev6.tar.gz (17 kB)
2021-03-22T12:39:37,146   Added ebi-eva-common-pyutils==0.3.9.dev6 from https://files.pythonhosted.org/packages/38/2b/a5f1ed445e800df42feea0f26f50f72ea8fed8bb4d6185c079ad32eb1353/ebi_eva_common_pyutils-0.3.9.dev6.tar.gz#sha256=97440b6f64fc0c9f5ccdb53a1d353359108698aa9d4ed96fde561feaa4b9feb1 to build tracker '/tmp/pip-req-tracker-v18pq2hi'
2021-03-22T12:39:37,148     Running setup.py (path:/tmp/pip-wheel-w99l324y/ebi-eva-common-pyutils_c946e266346b436780fdb5f06de7562b/setup.py) egg_info for package ebi-eva-common-pyutils
2021-03-22T12:39:37,149     Created temporary directory: /tmp/pip-pip-egg-info-jxcc8hh0
2021-03-22T12:39:37,150     Running command python setup.py egg_info
2021-03-22T12:39:39,362     running egg_info
2021-03-22T12:39:39,369     creating /tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info
2021-03-22T12:39:39,371     writing dependency_links to /tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-22T12:39:39,374     writing top-level names to /tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-22T12:39:39,377     writing /tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-22T12:39:39,383     writing requirements to /tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-22T12:39:39,388     writing manifest file '/tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-22T12:39:39,753     reading manifest file '/tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-22T12:39:39,763     writing manifest file '/tmp/pip-pip-egg-info-jxcc8hh0/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-22T12:39:39,765     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev6' to '0.3.9.dev6'
2021-03-22T12:39:39,766       warnings.warn(tmpl.format(**locals()))
2021-03-22T12:39:39,897   Source in /tmp/pip-wheel-w99l324y/ebi-eva-common-pyutils_c946e266346b436780fdb5f06de7562b has version 0.3.9.dev6, which satisfies requirement ebi-eva-common-pyutils==0.3.9.dev6 from https://files.pythonhosted.org/packages/38/2b/a5f1ed445e800df42feea0f26f50f72ea8fed8bb4d6185c079ad32eb1353/ebi_eva_common_pyutils-0.3.9.dev6.tar.gz#sha256=97440b6f64fc0c9f5ccdb53a1d353359108698aa9d4ed96fde561feaa4b9feb1
2021-03-22T12:39:39,899   Removed ebi-eva-common-pyutils==0.3.9.dev6 from https://files.pythonhosted.org/packages/38/2b/a5f1ed445e800df42feea0f26f50f72ea8fed8bb4d6185c079ad32eb1353/ebi_eva_common_pyutils-0.3.9.dev6.tar.gz#sha256=97440b6f64fc0c9f5ccdb53a1d353359108698aa9d4ed96fde561feaa4b9feb1 from build tracker '/tmp/pip-req-tracker-v18pq2hi'
2021-03-22T12:39:39,907 Created temporary directory: /tmp/pip-unpack-wwnu_s3u
2021-03-22T12:39:39,908 Building wheels for collected packages: ebi-eva-common-pyutils
2021-03-22T12:39:39,917   Created temporary directory: /tmp/pip-wheel-ol7wwt89
2021-03-22T12:39:39,918   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-03-22T12:39:39,919   Destination directory: /tmp/pip-wheel-ol7wwt89
2021-03-22T12:39:39,919   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w99l324y/ebi-eva-common-pyutils_c946e266346b436780fdb5f06de7562b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w99l324y/ebi-eva-common-pyutils_c946e266346b436780fdb5f06de7562b/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ol7wwt89
2021-03-22T12:39:42,012   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev6' to '0.3.9.dev6'
2021-03-22T12:39:42,013     warnings.warn(tmpl.format(**locals()))
2021-03-22T12:39:42,133   running bdist_wheel
2021-03-22T12:39:42,149   running build
2021-03-22T12:39:42,149   running build_py
2021-03-22T12:39:42,490   creating build
2021-03-22T12:39:42,491   creating build/lib
2021-03-22T12:39:42,493   creating build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,496   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,501   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,506   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,510   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,516   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,523   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,529   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,535   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,541   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,547   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,553   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-22T12:39:42,561   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-03-22T12:39:42,563   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-22T12:39:42,570   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-22T12:39:42,578   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-22T12:39:42,581   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-22T12:39:42,586   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-22T12:39:42,594   creating build/lib/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,597   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,602   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,608   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,616   creating build/lib/ebi_eva_common_pyutils/assembly
2021-03-22T12:39:42,617   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-22T12:39:42,622   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-22T12:39:42,629   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-03-22T12:39:42,631   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-22T12:39:42,637   copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-22T12:39:42,660   installing to build/bdist.linux-armv7l/wheel
2021-03-22T12:39:42,661   running install
2021-03-22T12:39:42,663   running install_lib
2021-03-22T12:39:42,671   creating build/bdist.linux-armv7l
2021-03-22T12:39:42,672   creating build/bdist.linux-armv7l/wheel
2021-03-22T12:39:42,675   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,678   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,682   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,689   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-22T12:39:42,690   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-22T12:39:42,695   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-22T12:39:42,702   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,707   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,712   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,720   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-22T12:39:42,722   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-22T12:39:42,728   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-22T12:39:42,733   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,739   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,746   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,749   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,754   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,759   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-22T12:39:42,766   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,771   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,777   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,784   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-22T12:39:42,786   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-22T12:39:42,792   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-22T12:39:42,799   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-22T12:39:42,806   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-22T12:39:42,808   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-22T12:39:42,815   copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-22T12:39:42,819   running install_egg_info
2021-03-22T12:39:42,870   running egg_info
2021-03-22T12:39:42,872   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-22T12:39:42,874   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-22T12:39:42,878   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-22T12:39:42,882   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-22T12:39:42,896   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-22T12:39:42,909   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-22T12:39:42,912   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev6-py3.5.egg-info
2021-03-22T12:39:42,936   running install_scripts
2021-03-22T12:39:43,139   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev6.dist-info/WHEEL
2021-03-22T12:39:43,447   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-03-22T12:39:43,452   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev6-py3-none-any.whl size=28302 sha256=5af8934db3381c74c108fe64add5234cf94de288c2ed03144f98770064eb4882
2021-03-22T12:39:43,453   Stored in directory: /tmp/pip-ephem-wheel-cache-e221iy4w/wheels/1e/23/f9/b26d8656975b33c8ac78bf92f1cfc99d7aa27c3c02845d6b8f
2021-03-22T12:39:43,483 Successfully built ebi-eva-common-pyutils
2021-03-22T12:39:43,495 Removed build tracker: '/tmp/pip-req-tracker-v18pq2hi'