2021-03-24T22:28:55,263 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-24T22:28:55,986 Created temporary directory: /tmp/pip-ephem-wheel-cache-iqx1tgp3
2021-03-24T22:28:55,991 Created temporary directory: /tmp/pip-req-tracker-l4tnuy81
2021-03-24T22:28:55,992 Initialized build tracking at /tmp/pip-req-tracker-l4tnuy81
2021-03-24T22:28:55,992 Created build tracker: /tmp/pip-req-tracker-l4tnuy81
2021-03-24T22:28:55,993 Entered build tracker: /tmp/pip-req-tracker-l4tnuy81
2021-03-24T22:28:55,994 Created temporary directory: /tmp/pip-wheel-a1dzy7_v
2021-03-24T22:28:56,069 1 location(s) to search for versions of ebi-eva-common-pyutils:
2021-03-24T22:28:56,069 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-24T22:28:56,070 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-24T22:28:56,072 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-24T22:28:56,076 Found index url https://pypi.org/simple
2021-03-24T22:28:56,498   Found link https://files.pythonhosted.org/packages/9e/9b/317ead3c40323329a254f184824042eb0d8ef5b17539294811f15f483bd2/ebi_eva_common_pyutils-0.1.0.tar.gz#sha256=e5ce62f2de83200433cd7aefd5464943dec2d42c1695681da7548f7fc2eecccd (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.0
2021-03-24T22:28:56,499   Found link https://files.pythonhosted.org/packages/0f/5c/283ef1a9bff4dac565284ab47e542e3b82ba08d748e054b115e08fc78aa1/ebi_eva_common_pyutils-0.1.1.tar.gz#sha256=28c5bca7afc77f935319006704a86d0b396a12cfc511e7cffbbf505d847fa4e6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.1
2021-03-24T22:28:56,500   Found link https://files.pythonhosted.org/packages/02/cb/3049d6162e9542dd6513b8767c5dc1e394c2c3a107465ef7a2d770fc16bb/ebi_eva_common_pyutils-0.1.2.tar.gz#sha256=6c1d7c64e1133d7ac95cd6c6bcde70d4509b424a69c259aa33ed02d0c6c57bf6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.2
2021-03-24T22:28:56,501   Found link https://files.pythonhosted.org/packages/67/9b/032eaa416c06a9b8fd815671927891b1e32a245fa4c3d88aea49a3af972e/ebi_eva_common_pyutils-0.1.4.tar.gz#sha256=478d3b8ddba339cb74919eb0f2293d54732999b32a0493ce8d1d5a0c71ba6fc1 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.4
2021-03-24T22:28:56,502   Found link https://files.pythonhosted.org/packages/56/b2/b01ae2bd76c7e6abcb250f3e58d706993f728de86324296c5cdfca7115f3/ebi_eva_common_pyutils-0.1.5.tar.gz#sha256=68b44d4a65b4efa3981929458a9959de6b8b0292595f8f4c272df42226752c64 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.5
2021-03-24T22:28:56,503   Found link https://files.pythonhosted.org/packages/b9/78/f55123ffc2edc788f9fc14921cee21d2319023fe58b6cd1e8b66b5455a87/ebi_eva_common_pyutils-0.1.6.tar.gz#sha256=a4472897a78ed5d10a14e16ad6d1a87226f0ab83a7decb105db6b1e6ecbf6203 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.6
2021-03-24T22:28:56,504   Found link https://files.pythonhosted.org/packages/0f/b5/fe0343db4b17e8407f3f65b75bf5e5201b5c7454419168dc75caa16696e2/ebi_eva_common_pyutils-0.1.7.tar.gz#sha256=e1a2f973425428b98f1faa08db6f9b1a07e12ee6be4c3e2e77b18b2f862c6486 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.7
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2021-03-24T22:28:56,526   Found link https://files.pythonhosted.org/packages/7d/0d/52e58bb121e3bfb3f33be48bf352e7eef3db35c0da8277de36ccf5a6e95a/ebi_eva_common_pyutils-0.3.9.dev4.tar.gz#sha256=9e038fb6c9fa91bef16371ed4ffd8441b1439727a881e3eac9f09740f4f562c9 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev4
2021-03-24T22:28:56,527   Found link https://files.pythonhosted.org/packages/0a/bd/fd183b78af2426c630b73cee4882a85be8c3e1bcaa7241d90b20653e34d9/ebi_eva_common_pyutils-0.3.9.dev5.tar.gz#sha256=0e31e6b7fe204d828b6bce284c72a12f9668aa0a13c871efb8e5a041cccb40aa (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev5
2021-03-24T22:28:56,528   Found link https://files.pythonhosted.org/packages/38/2b/a5f1ed445e800df42feea0f26f50f72ea8fed8bb4d6185c079ad32eb1353/ebi_eva_common_pyutils-0.3.9.dev6.tar.gz#sha256=97440b6f64fc0c9f5ccdb53a1d353359108698aa9d4ed96fde561feaa4b9feb1 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev6
2021-03-24T22:28:56,529   Found link https://files.pythonhosted.org/packages/eb/ea/3d735b9a05df42e2347d9b37d9fb84b9669f1c48810571bb9e82735ef125/ebi_eva_common_pyutils-0.3.9.dev7.tar.gz#sha256=5056188065fcb839c3c6b99c21e14fe0849184eb968153c9b0d2e543eb17d5fc (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev7
2021-03-24T22:28:56,575 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-03-24T22:28:56,613 Collecting ebi-eva-common-pyutils==0.3.9.dev7
2021-03-24T22:28:56,617   Created temporary directory: /tmp/pip-unpack-m_dn71zy
2021-03-24T22:28:56,846   Downloading ebi_eva_common_pyutils-0.3.9.dev7.tar.gz (17 kB)
2021-03-24T22:28:57,055   Added ebi-eva-common-pyutils==0.3.9.dev7 from https://files.pythonhosted.org/packages/eb/ea/3d735b9a05df42e2347d9b37d9fb84b9669f1c48810571bb9e82735ef125/ebi_eva_common_pyutils-0.3.9.dev7.tar.gz#sha256=5056188065fcb839c3c6b99c21e14fe0849184eb968153c9b0d2e543eb17d5fc to build tracker '/tmp/pip-req-tracker-l4tnuy81'
2021-03-24T22:28:57,057     Running setup.py (path:/tmp/pip-wheel-a1dzy7_v/ebi-eva-common-pyutils_6cdf716c447e4944a3854c5982fabb5c/setup.py) egg_info for package ebi-eva-common-pyutils
2021-03-24T22:28:57,059     Created temporary directory: /tmp/pip-pip-egg-info-1hnu98dl
2021-03-24T22:28:57,059     Running command python setup.py egg_info
2021-03-24T22:28:59,698     running egg_info
2021-03-24T22:28:59,706     creating /tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info
2021-03-24T22:28:59,710     writing dependency_links to /tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-24T22:28:59,713     writing top-level names to /tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-24T22:28:59,716     writing /tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-24T22:28:59,720     writing requirements to /tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-24T22:28:59,724     writing manifest file '/tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:29:00,093     reading manifest file '/tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:29:00,103     writing manifest file '/tmp/pip-pip-egg-info-1hnu98dl/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:29:00,105     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev7' to '0.3.9.dev7'
2021-03-24T22:29:00,106       warnings.warn(tmpl.format(**locals()))
2021-03-24T22:29:00,240   Source in /tmp/pip-wheel-a1dzy7_v/ebi-eva-common-pyutils_6cdf716c447e4944a3854c5982fabb5c has version 0.3.9.dev7, which satisfies requirement ebi-eva-common-pyutils==0.3.9.dev7 from https://files.pythonhosted.org/packages/eb/ea/3d735b9a05df42e2347d9b37d9fb84b9669f1c48810571bb9e82735ef125/ebi_eva_common_pyutils-0.3.9.dev7.tar.gz#sha256=5056188065fcb839c3c6b99c21e14fe0849184eb968153c9b0d2e543eb17d5fc
2021-03-24T22:29:00,242   Removed ebi-eva-common-pyutils==0.3.9.dev7 from https://files.pythonhosted.org/packages/eb/ea/3d735b9a05df42e2347d9b37d9fb84b9669f1c48810571bb9e82735ef125/ebi_eva_common_pyutils-0.3.9.dev7.tar.gz#sha256=5056188065fcb839c3c6b99c21e14fe0849184eb968153c9b0d2e543eb17d5fc from build tracker '/tmp/pip-req-tracker-l4tnuy81'
2021-03-24T22:29:00,251 Created temporary directory: /tmp/pip-unpack-j2zllpez
2021-03-24T22:29:00,252 Building wheels for collected packages: ebi-eva-common-pyutils
2021-03-24T22:29:00,261   Created temporary directory: /tmp/pip-wheel-asti3ail
2021-03-24T22:29:00,262   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-03-24T22:29:00,262   Destination directory: /tmp/pip-wheel-asti3ail
2021-03-24T22:29:00,263   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a1dzy7_v/ebi-eva-common-pyutils_6cdf716c447e4944a3854c5982fabb5c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a1dzy7_v/ebi-eva-common-pyutils_6cdf716c447e4944a3854c5982fabb5c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-asti3ail
2021-03-24T22:29:02,558   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev7' to '0.3.9.dev7'
2021-03-24T22:29:02,559     warnings.warn(tmpl.format(**locals()))
2021-03-24T22:29:02,680   running bdist_wheel
2021-03-24T22:29:02,697   running build
2021-03-24T22:29:02,698   running build_py
2021-03-24T22:29:03,043   creating build
2021-03-24T22:29:03,043   creating build/lib
2021-03-24T22:29:03,045   creating build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,048   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,053   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,058   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,063   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,068   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,074   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,080   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,086   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,091   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,095   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,099   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:29:03,103   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-03-24T22:29:03,105   copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-24T22:29:03,110   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-24T22:29:03,115   creating build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,117   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,123   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,127   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,134   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-03-24T22:29:03,137   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-24T22:29:03,143   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-24T22:29:03,150   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:29:03,152   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:29:03,156   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:29:03,161   creating build/lib/ebi_eva_common_pyutils/assembly
2021-03-24T22:29:03,163   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-24T22:29:03,169   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-24T22:29:03,187   installing to build/bdist.linux-armv7l/wheel
2021-03-24T22:29:03,188   running install
2021-03-24T22:29:03,190   running install_lib
2021-03-24T22:29:03,198   creating build/bdist.linux-armv7l
2021-03-24T22:29:03,198   creating build/bdist.linux-armv7l/wheel
2021-03-24T22:29:03,202   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,205   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,210   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,215   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,220   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-24T22:29:03,222   copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-24T22:29:03,227   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-24T22:29:03,232   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,239   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,242   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,249   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,253   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:29:03,258   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-24T22:29:03,260   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-24T22:29:03,266   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-24T22:29:03,270   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,276   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,284   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:29:03,287   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:29:03,292   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:29:03,296   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,301   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,305   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,310   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,317   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-24T22:29:03,320   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-24T22:29:03,328   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-24T22:29:03,333   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:29:03,336   running install_egg_info
2021-03-24T22:29:03,382   running egg_info
2021-03-24T22:29:03,384   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-24T22:29:03,387   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-24T22:29:03,391   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-24T22:29:03,394   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-24T22:29:03,409   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:29:03,422   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:29:03,425   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev7-py3.5.egg-info
2021-03-24T22:29:03,450   running install_scripts
2021-03-24T22:29:03,651   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev7.dist-info/WHEEL
2021-03-24T22:29:03,958   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-03-24T22:29:03,962   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev7-py3-none-any.whl size=28301 sha256=4abd88bf47cc8ba724176d53193339ddb2952857b3ad7e1a862c8b380b61511c
2021-03-24T22:29:03,963   Stored in directory: /tmp/pip-ephem-wheel-cache-iqx1tgp3/wheels/00/ef/05/79ed7f7dc5f4fe2fe6ef7e12d996a820394dbe0fbf60b56152
2021-03-24T22:29:03,982 Successfully built ebi-eva-common-pyutils
2021-03-24T22:29:03,991 Removed build tracker: '/tmp/pip-req-tracker-l4tnuy81'