2021-03-24T22:50:22,767 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-24T22:50:23,488 Created temporary directory: /tmp/pip-ephem-wheel-cache-f91694l7
2021-03-24T22:50:23,493 Created temporary directory: /tmp/pip-req-tracker-2i3q02d_
2021-03-24T22:50:23,494 Initialized build tracking at /tmp/pip-req-tracker-2i3q02d_
2021-03-24T22:50:23,494 Created build tracker: /tmp/pip-req-tracker-2i3q02d_
2021-03-24T22:50:23,495 Entered build tracker: /tmp/pip-req-tracker-2i3q02d_
2021-03-24T22:50:23,496 Created temporary directory: /tmp/pip-wheel-cmt2bsiw
2021-03-24T22:50:23,572 1 location(s) to search for versions of ebi-eva-common-pyutils:
2021-03-24T22:50:23,572 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-24T22:50:23,573 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-24T22:50:23,575 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-24T22:50:23,580 Found index url https://pypi.org/simple
2021-03-24T22:50:23,948   Found link https://files.pythonhosted.org/packages/9e/9b/317ead3c40323329a254f184824042eb0d8ef5b17539294811f15f483bd2/ebi_eva_common_pyutils-0.1.0.tar.gz#sha256=e5ce62f2de83200433cd7aefd5464943dec2d42c1695681da7548f7fc2eecccd (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.0
2021-03-24T22:50:23,949   Found link https://files.pythonhosted.org/packages/0f/5c/283ef1a9bff4dac565284ab47e542e3b82ba08d748e054b115e08fc78aa1/ebi_eva_common_pyutils-0.1.1.tar.gz#sha256=28c5bca7afc77f935319006704a86d0b396a12cfc511e7cffbbf505d847fa4e6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.1
2021-03-24T22:50:23,950   Found link https://files.pythonhosted.org/packages/02/cb/3049d6162e9542dd6513b8767c5dc1e394c2c3a107465ef7a2d770fc16bb/ebi_eva_common_pyutils-0.1.2.tar.gz#sha256=6c1d7c64e1133d7ac95cd6c6bcde70d4509b424a69c259aa33ed02d0c6c57bf6 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.2
2021-03-24T22:50:23,951   Found link https://files.pythonhosted.org/packages/67/9b/032eaa416c06a9b8fd815671927891b1e32a245fa4c3d88aea49a3af972e/ebi_eva_common_pyutils-0.1.4.tar.gz#sha256=478d3b8ddba339cb74919eb0f2293d54732999b32a0493ce8d1d5a0c71ba6fc1 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.4
2021-03-24T22:50:23,952   Found link https://files.pythonhosted.org/packages/56/b2/b01ae2bd76c7e6abcb250f3e58d706993f728de86324296c5cdfca7115f3/ebi_eva_common_pyutils-0.1.5.tar.gz#sha256=68b44d4a65b4efa3981929458a9959de6b8b0292595f8f4c272df42226752c64 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.5
2021-03-24T22:50:23,953   Found link https://files.pythonhosted.org/packages/b9/78/f55123ffc2edc788f9fc14921cee21d2319023fe58b6cd1e8b66b5455a87/ebi_eva_common_pyutils-0.1.6.tar.gz#sha256=a4472897a78ed5d10a14e16ad6d1a87226f0ab83a7decb105db6b1e6ecbf6203 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.1.6
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2021-03-24T22:50:23,978   Found link https://files.pythonhosted.org/packages/38/2b/a5f1ed445e800df42feea0f26f50f72ea8fed8bb4d6185c079ad32eb1353/ebi_eva_common_pyutils-0.3.9.dev6.tar.gz#sha256=97440b6f64fc0c9f5ccdb53a1d353359108698aa9d4ed96fde561feaa4b9feb1 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev6
2021-03-24T22:50:23,979   Found link https://files.pythonhosted.org/packages/eb/ea/3d735b9a05df42e2347d9b37d9fb84b9669f1c48810571bb9e82735ef125/ebi_eva_common_pyutils-0.3.9.dev7.tar.gz#sha256=5056188065fcb839c3c6b99c21e14fe0849184eb968153c9b0d2e543eb17d5fc (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev7
2021-03-24T22:50:23,980   Found link https://files.pythonhosted.org/packages/f9/9d/13dcf1d3ddd50cf7b877cbf961208e98ce24932eedb90c7eb871cdf1f740/ebi_eva_common_pyutils-0.3.9.dev8.tar.gz#sha256=d48a0d394021aaf0a31950f65d68080015e104aed5f468bed6e832ea5239f421 (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.9.dev8
2021-03-24T22:50:24,027 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-03-24T22:50:24,064 Collecting ebi-eva-common-pyutils==0.3.9.dev8
2021-03-24T22:50:24,067   Created temporary directory: /tmp/pip-unpack-608bolck
2021-03-24T22:50:24,296   Downloading ebi_eva_common_pyutils-0.3.9.dev8.tar.gz (17 kB)
2021-03-24T22:50:24,504   Added ebi-eva-common-pyutils==0.3.9.dev8 from https://files.pythonhosted.org/packages/f9/9d/13dcf1d3ddd50cf7b877cbf961208e98ce24932eedb90c7eb871cdf1f740/ebi_eva_common_pyutils-0.3.9.dev8.tar.gz#sha256=d48a0d394021aaf0a31950f65d68080015e104aed5f468bed6e832ea5239f421 to build tracker '/tmp/pip-req-tracker-2i3q02d_'
2021-03-24T22:50:24,506     Running setup.py (path:/tmp/pip-wheel-cmt2bsiw/ebi-eva-common-pyutils_5563872595f245ea8cfc7a6e6b0b10a9/setup.py) egg_info for package ebi-eva-common-pyutils
2021-03-24T22:50:24,508     Created temporary directory: /tmp/pip-pip-egg-info-8_ficrse
2021-03-24T22:50:24,508     Running command python setup.py egg_info
2021-03-24T22:50:26,824     running egg_info
2021-03-24T22:50:26,832     creating /tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info
2021-03-24T22:50:26,836     writing top-level names to /tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-24T22:50:26,839     writing /tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-24T22:50:26,843     writing requirements to /tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-24T22:50:26,845     writing dependency_links to /tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-24T22:50:26,849     writing manifest file '/tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:50:27,213     reading manifest file '/tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:50:27,222     writing manifest file '/tmp/pip-pip-egg-info-8_ficrse/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:50:27,225     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev8' to '0.3.9.dev8'
2021-03-24T22:50:27,226       warnings.warn(tmpl.format(**locals()))
2021-03-24T22:50:27,357   Source in /tmp/pip-wheel-cmt2bsiw/ebi-eva-common-pyutils_5563872595f245ea8cfc7a6e6b0b10a9 has version 0.3.9.dev8, which satisfies requirement ebi-eva-common-pyutils==0.3.9.dev8 from https://files.pythonhosted.org/packages/f9/9d/13dcf1d3ddd50cf7b877cbf961208e98ce24932eedb90c7eb871cdf1f740/ebi_eva_common_pyutils-0.3.9.dev8.tar.gz#sha256=d48a0d394021aaf0a31950f65d68080015e104aed5f468bed6e832ea5239f421
2021-03-24T22:50:27,359   Removed ebi-eva-common-pyutils==0.3.9.dev8 from https://files.pythonhosted.org/packages/f9/9d/13dcf1d3ddd50cf7b877cbf961208e98ce24932eedb90c7eb871cdf1f740/ebi_eva_common_pyutils-0.3.9.dev8.tar.gz#sha256=d48a0d394021aaf0a31950f65d68080015e104aed5f468bed6e832ea5239f421 from build tracker '/tmp/pip-req-tracker-2i3q02d_'
2021-03-24T22:50:27,367 Created temporary directory: /tmp/pip-unpack-vg_5unxj
2021-03-24T22:50:27,368 Building wheels for collected packages: ebi-eva-common-pyutils
2021-03-24T22:50:27,377   Created temporary directory: /tmp/pip-wheel-8t6abdvq
2021-03-24T22:50:27,378   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-03-24T22:50:27,378   Destination directory: /tmp/pip-wheel-8t6abdvq
2021-03-24T22:50:27,379   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cmt2bsiw/ebi-eva-common-pyutils_5563872595f245ea8cfc7a6e6b0b10a9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cmt2bsiw/ebi-eva-common-pyutils_5563872595f245ea8cfc7a6e6b0b10a9/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8t6abdvq
2021-03-24T22:50:29,600   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev8' to '0.3.9.dev8'
2021-03-24T22:50:29,601     warnings.warn(tmpl.format(**locals()))
2021-03-24T22:50:29,722   running bdist_wheel
2021-03-24T22:50:29,739   running build
2021-03-24T22:50:29,740   running build_py
2021-03-24T22:50:30,084   creating build
2021-03-24T22:50:30,085   creating build/lib
2021-03-24T22:50:30,086   creating build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,089   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,095   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,100   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,104   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,109   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,114   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,119   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,126   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,132   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,137   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,141   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-03-24T22:50:30,146   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-03-24T22:50:30,149   copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-24T22:50:30,153   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-24T22:50:30,159   creating build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,161   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,167   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,171   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,176   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-03-24T22:50:30,179   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-24T22:50:30,186   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-24T22:50:30,194   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:50:30,197   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:50:30,202   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:50:30,206   creating build/lib/ebi_eva_common_pyutils/assembly
2021-03-24T22:50:30,209   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-24T22:50:30,215   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-24T22:50:30,242   installing to build/bdist.linux-armv7l/wheel
2021-03-24T22:50:30,243   running install
2021-03-24T22:50:30,245   running install_lib
2021-03-24T22:50:30,253   creating build/bdist.linux-armv7l
2021-03-24T22:50:30,254   creating build/bdist.linux-armv7l/wheel
2021-03-24T22:50:30,258   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,261   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,266   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,272   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,277   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-24T22:50:30,279   copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-24T22:50:30,286   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-24T22:50:30,292   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,299   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,301   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,307   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,311   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-24T22:50:30,316   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-24T22:50:30,318   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-24T22:50:30,325   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-24T22:50:30,330   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,336   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,343   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:50:30,345   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:50:30,350   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-24T22:50:30,353   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,358   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,363   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,368   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,376   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-24T22:50:30,378   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-24T22:50:30,385   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-24T22:50:30,389   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-24T22:50:30,392   running install_egg_info
2021-03-24T22:50:30,438   running egg_info
2021-03-24T22:50:30,439   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-24T22:50:30,442   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-24T22:50:30,445   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-24T22:50:30,446   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-24T22:50:30,465   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:50:30,478   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-24T22:50:30,481   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev8-py3.5.egg-info
2021-03-24T22:50:30,505   running install_scripts
2021-03-24T22:50:30,711   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev8.dist-info/WHEEL
2021-03-24T22:50:31,007   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-03-24T22:50:31,011   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev8-py3-none-any.whl size=28321 sha256=b5072a52cf625f9cea19d09ab2450c6149a3b870ae672f2d1680c0636d2e8df9
2021-03-24T22:50:31,012   Stored in directory: /tmp/pip-ephem-wheel-cache-f91694l7/wheels/88/e4/15/29c19cac8463df77ab9487acf20da25e50161b1ab203552596
2021-03-24T22:50:31,031 Successfully built ebi-eva-common-pyutils
2021-03-24T22:50:31,041 Removed build tracker: '/tmp/pip-req-tracker-2i3q02d_'