2021-03-25T16:09:19,911 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-25T16:09:20,676 Created temporary directory: /tmp/pip-ephem-wheel-cache-fs09lvr5
2021-03-25T16:09:20,682 Created temporary directory: /tmp/pip-req-tracker-a4snthpr
2021-03-25T16:09:20,683 Initialized build tracking at /tmp/pip-req-tracker-a4snthpr
2021-03-25T16:09:20,684 Created build tracker: /tmp/pip-req-tracker-a4snthpr
2021-03-25T16:09:20,684 Entered build tracker: /tmp/pip-req-tracker-a4snthpr
2021-03-25T16:09:20,686 Created temporary directory: /tmp/pip-wheel-fvssglfq
2021-03-25T16:09:20,760 1 location(s) to search for versions of ebi-eva-common-pyutils:
2021-03-25T16:09:20,760 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-25T16:09:20,761 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-25T16:09:20,763 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-25T16:09:20,768 Found index url https://pypi.org/simple
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2021-03-25T16:09:21,223 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-03-25T16:09:21,258 Collecting ebi-eva-common-pyutils==0.3.9.dev12
2021-03-25T16:09:21,262   Created temporary directory: /tmp/pip-unpack-dyz05qbm
2021-03-25T16:09:21,483   Downloading ebi_eva_common_pyutils-0.3.9.dev12.tar.gz (17 kB)
2021-03-25T16:09:21,697   Added ebi-eva-common-pyutils==0.3.9.dev12 from https://files.pythonhosted.org/packages/42/72/2f25e16929d6156c7da44429822592d390361e59932b3b40e4e333a7c328/ebi_eva_common_pyutils-0.3.9.dev12.tar.gz#sha256=bf96bda4fcfeb05a7bb9654f5393c891d72a0a80b172a7c82693a2afa6849c23 to build tracker '/tmp/pip-req-tracker-a4snthpr'
2021-03-25T16:09:21,699     Running setup.py (path:/tmp/pip-wheel-fvssglfq/ebi-eva-common-pyutils_8dd82869a78944a3b2bf1c3228c5a255/setup.py) egg_info for package ebi-eva-common-pyutils
2021-03-25T16:09:21,700     Created temporary directory: /tmp/pip-pip-egg-info-2l3wijwl
2021-03-25T16:09:21,702     Running command python setup.py egg_info
2021-03-25T16:09:24,054     running egg_info
2021-03-25T16:09:24,062     creating /tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info
2021-03-25T16:09:24,064     writing /tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-25T16:09:24,069     writing dependency_links to /tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-25T16:09:24,071     writing top-level names to /tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-25T16:09:24,074     writing requirements to /tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-25T16:09:24,080     writing manifest file '/tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:09:24,449     reading manifest file '/tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:09:24,459     writing manifest file '/tmp/pip-pip-egg-info-2l3wijwl/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:09:24,461     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev12' to '0.3.9.dev12'
2021-03-25T16:09:24,462       warnings.warn(tmpl.format(**locals()))
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2021-03-25T16:09:24,597   Removed ebi-eva-common-pyutils==0.3.9.dev12 from https://files.pythonhosted.org/packages/42/72/2f25e16929d6156c7da44429822592d390361e59932b3b40e4e333a7c328/ebi_eva_common_pyutils-0.3.9.dev12.tar.gz#sha256=bf96bda4fcfeb05a7bb9654f5393c891d72a0a80b172a7c82693a2afa6849c23 from build tracker '/tmp/pip-req-tracker-a4snthpr'
2021-03-25T16:09:24,606 Created temporary directory: /tmp/pip-unpack-74w1ewuy
2021-03-25T16:09:24,607 Building wheels for collected packages: ebi-eva-common-pyutils
2021-03-25T16:09:24,616   Created temporary directory: /tmp/pip-wheel-wlg22917
2021-03-25T16:09:24,617   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-03-25T16:09:24,618   Destination directory: /tmp/pip-wheel-wlg22917
2021-03-25T16:09:24,618   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fvssglfq/ebi-eva-common-pyutils_8dd82869a78944a3b2bf1c3228c5a255/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fvssglfq/ebi-eva-common-pyutils_8dd82869a78944a3b2bf1c3228c5a255/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-wlg22917
2021-03-25T16:09:26,963   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev12' to '0.3.9.dev12'
2021-03-25T16:09:26,964     warnings.warn(tmpl.format(**locals()))
2021-03-25T16:09:27,085   running bdist_wheel
2021-03-25T16:09:27,101   running build
2021-03-25T16:09:27,102   running build_py
2021-03-25T16:09:27,444   creating build
2021-03-25T16:09:27,445   creating build/lib
2021-03-25T16:09:27,447   creating build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,450   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,456   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,461   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,466   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,471   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,478   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,484   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,490   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,496   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,501   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,507   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:09:27,515   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:09:27,518   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:09:27,525   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:09:27,531   creating build/lib/ebi_eva_common_pyutils/assembly
2021-03-25T16:09:27,533   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-25T16:09:27,539   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-25T16:09:27,545   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-03-25T16:09:27,547   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-25T16:09:27,553   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-25T16:09:27,561   creating build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:09:27,564   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:09:28,673   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:09:28,679   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:09:28,686   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-03-25T16:09:28,689   copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-25T16:09:28,695   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-25T16:09:28,719   installing to build/bdist.linux-armv7l/wheel
2021-03-25T16:09:28,720   running install
2021-03-25T16:09:28,722   running install_lib
2021-03-25T16:09:28,730   creating build/bdist.linux-armv7l
2021-03-25T16:09:28,731   creating build/bdist.linux-armv7l/wheel
2021-03-25T16:09:28,735   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,738   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,745   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:09:28,746   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:09:28,752   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:09:28,757   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,765   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-25T16:09:28,768   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-25T16:09:28,775   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-25T16:09:28,783   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-25T16:09:28,785   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-25T16:09:28,793   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-25T16:09:28,800   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:09:28,802   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:09:28,809   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:09:28,815   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:09:28,819   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,825   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,831   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,837   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,842   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,848   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,854   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-25T16:09:28,856   copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-25T16:09:28,861   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-25T16:09:28,865   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,868   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,873   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:09:28,877   running install_egg_info
2021-03-25T16:09:28,928   running egg_info
2021-03-25T16:09:28,929   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-25T16:09:28,931   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-25T16:09:28,934   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-25T16:09:28,939   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-25T16:09:28,954   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:09:28,967   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:09:28,970   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev12-py3.5.egg-info
2021-03-25T16:09:28,993   running install_scripts
2021-03-25T16:09:29,203   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev12.dist-info/WHEEL
2021-03-25T16:09:29,525   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-03-25T16:09:29,529   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev12-py3-none-any.whl size=28557 sha256=1998e3f9e0ea2d1595057ab4ef9313baaa478d3e93c46ec56bd8205bf2eb918a
2021-03-25T16:09:29,530   Stored in directory: /tmp/pip-ephem-wheel-cache-fs09lvr5/wheels/74/dd/a1/bbac2fb829e8ae0cd9bd300ea84b0a2ce60adcf6ba57fc6dad
2021-03-25T16:09:29,550 Successfully built ebi-eva-common-pyutils
2021-03-25T16:09:29,560 Removed build tracker: '/tmp/pip-req-tracker-a4snthpr'