2021-03-25T16:39:17,503 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-25T16:39:18,222 Created temporary directory: /tmp/pip-ephem-wheel-cache-ftrhpmsq
2021-03-25T16:39:18,226 Created temporary directory: /tmp/pip-req-tracker-je6owu64
2021-03-25T16:39:18,227 Initialized build tracking at /tmp/pip-req-tracker-je6owu64
2021-03-25T16:39:18,228 Created build tracker: /tmp/pip-req-tracker-je6owu64
2021-03-25T16:39:18,228 Entered build tracker: /tmp/pip-req-tracker-je6owu64
2021-03-25T16:39:18,230 Created temporary directory: /tmp/pip-wheel-0miq65oo
2021-03-25T16:39:18,294 1 location(s) to search for versions of ebi-eva-common-pyutils:
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2021-03-25T16:39:18,295 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-25T16:39:18,298 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-25T16:39:18,303 Found index url https://pypi.org/simple
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2021-03-25T16:39:18,780 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-03-25T16:39:18,819 Collecting ebi-eva-common-pyutils==0.3.9.dev13
2021-03-25T16:39:18,824   Created temporary directory: /tmp/pip-unpack-403b_gfy
2021-03-25T16:39:19,047   Downloading ebi_eva_common_pyutils-0.3.9.dev13.tar.gz (17 kB)
2021-03-25T16:39:19,263   Added ebi-eva-common-pyutils==0.3.9.dev13 from https://files.pythonhosted.org/packages/b1/9b/851091e9a0ed05e4066b41f1b84a76e2e3e99d86e864beafafad9408d570/ebi_eva_common_pyutils-0.3.9.dev13.tar.gz#sha256=e6f71449df8c2835793e0477565c0b79af3e226d07b9a6c3dd60d7d6e7e746aa to build tracker '/tmp/pip-req-tracker-je6owu64'
2021-03-25T16:39:19,267     Running setup.py (path:/tmp/pip-wheel-0miq65oo/ebi-eva-common-pyutils_850812a113014736a06b140f61b74019/setup.py) egg_info for package ebi-eva-common-pyutils
2021-03-25T16:39:19,269     Created temporary directory: /tmp/pip-pip-egg-info-k56v7247
2021-03-25T16:39:19,269     Running command python setup.py egg_info
2021-03-25T16:39:21,686     running egg_info
2021-03-25T16:39:21,694     creating /tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info
2021-03-25T16:39:21,699     writing top-level names to /tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-25T16:39:21,701     writing /tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-25T16:39:21,705     writing dependency_links to /tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-25T16:39:21,708     writing requirements to /tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-25T16:39:21,712     writing manifest file '/tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:39:22,075     reading manifest file '/tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:39:22,085     writing manifest file '/tmp/pip-pip-egg-info-k56v7247/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:39:22,087     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev13' to '0.3.9.dev13'
2021-03-25T16:39:22,088       warnings.warn(tmpl.format(**locals()))
2021-03-25T16:39:22,220   Source in /tmp/pip-wheel-0miq65oo/ebi-eva-common-pyutils_850812a113014736a06b140f61b74019 has version 0.3.9.dev13, which satisfies requirement ebi-eva-common-pyutils==0.3.9.dev13 from https://files.pythonhosted.org/packages/b1/9b/851091e9a0ed05e4066b41f1b84a76e2e3e99d86e864beafafad9408d570/ebi_eva_common_pyutils-0.3.9.dev13.tar.gz#sha256=e6f71449df8c2835793e0477565c0b79af3e226d07b9a6c3dd60d7d6e7e746aa
2021-03-25T16:39:22,222   Removed ebi-eva-common-pyutils==0.3.9.dev13 from https://files.pythonhosted.org/packages/b1/9b/851091e9a0ed05e4066b41f1b84a76e2e3e99d86e864beafafad9408d570/ebi_eva_common_pyutils-0.3.9.dev13.tar.gz#sha256=e6f71449df8c2835793e0477565c0b79af3e226d07b9a6c3dd60d7d6e7e746aa from build tracker '/tmp/pip-req-tracker-je6owu64'
2021-03-25T16:39:22,231 Created temporary directory: /tmp/pip-unpack-wsfo_qvu
2021-03-25T16:39:22,232 Building wheels for collected packages: ebi-eva-common-pyutils
2021-03-25T16:39:22,241   Created temporary directory: /tmp/pip-wheel-8posyv7o
2021-03-25T16:39:22,242   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-03-25T16:39:22,243   Destination directory: /tmp/pip-wheel-8posyv7o
2021-03-25T16:39:22,243   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0miq65oo/ebi-eva-common-pyutils_850812a113014736a06b140f61b74019/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0miq65oo/ebi-eva-common-pyutils_850812a113014736a06b140f61b74019/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8posyv7o
2021-03-25T16:39:24,453   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev13' to '0.3.9.dev13'
2021-03-25T16:39:24,454     warnings.warn(tmpl.format(**locals()))
2021-03-25T16:39:24,569   running bdist_wheel
2021-03-25T16:39:24,585   running build
2021-03-25T16:39:24,585   running build_py
2021-03-25T16:39:24,924   creating build
2021-03-25T16:39:24,925   creating build/lib
2021-03-25T16:39:24,926   creating build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,929   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,935   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,940   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,944   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,949   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,955   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,961   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,967   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,973   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,979   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,984   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-03-25T16:39:24,989   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-03-25T16:39:24,991   copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-25T16:39:24,996   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-25T16:39:25,001   creating build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,003   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,010   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,015   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,022   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-03-25T16:39:25,025   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-25T16:39:25,031   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-25T16:39:25,036   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:39:25,039   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:39:25,043   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:39:25,048   creating build/lib/ebi_eva_common_pyutils/assembly
2021-03-25T16:39:25,051   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-25T16:39:25,059   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-25T16:39:25,080   installing to build/bdist.linux-armv7l/wheel
2021-03-25T16:39:25,081   running install
2021-03-25T16:39:25,083   running install_lib
2021-03-25T16:39:25,090   creating build/bdist.linux-armv7l
2021-03-25T16:39:25,091   creating build/bdist.linux-armv7l/wheel
2021-03-25T16:39:25,095   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,097   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,103   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,108   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,115   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-25T16:39:25,118   copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-25T16:39:25,124   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-25T16:39:25,130   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,137   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,140   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,147   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,153   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-25T16:39:25,160   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-25T16:39:25,163   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-25T16:39:25,171   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-25T16:39:25,177   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,183   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,191   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:39:25,194   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:39:25,200   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-25T16:39:25,205   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,211   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,217   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,223   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,230   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-25T16:39:25,233   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-25T16:39:25,241   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-25T16:39:25,246   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-25T16:39:25,250   running install_egg_info
2021-03-25T16:39:25,297   running egg_info
2021-03-25T16:39:25,299   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-25T16:39:25,303   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-25T16:39:25,306   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-25T16:39:25,309   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-25T16:39:25,324   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:39:25,337   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-25T16:39:25,340   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev13-py3.5.egg-info
2021-03-25T16:39:25,367   running install_scripts
2021-03-25T16:39:25,564   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev13.dist-info/WHEEL
2021-03-25T16:39:25,873   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-03-25T16:39:25,878   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev13-py3-none-any.whl size=28556 sha256=51b1f7202d527c4b78d486a6a040a8bb74bf09dee5a1b9ab91bc6a8b24d1ca64
2021-03-25T16:39:25,878   Stored in directory: /tmp/pip-ephem-wheel-cache-ftrhpmsq/wheels/97/71/a9/1fd83eca0867d11570a3c28a62f3915108034975c3425a4a61
2021-03-25T16:39:25,897 Successfully built ebi-eva-common-pyutils
2021-03-25T16:39:25,906 Removed build tracker: '/tmp/pip-req-tracker-je6owu64'